RNA–Protein interactions for RNA: ENST00000311943.11

SCFD1-201, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 2,016 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-201ENST00000311943 LIG3P49916 1009 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 CCR5P51681 352 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 AFF3P51826 1226 aaKnown RBP12.13□□□□□ -0.47
SCFD1-201ENST00000311943 OTUD4Q01804 1114 aaKnown RBP12.13□□□□□ -0.47
SCFD1-201ENST00000311943 RFTN1Q14699 578 aaPredicted RBP12.13□□□□□ -0.47
SCFD1-201ENST00000311943 PAF1Q8N7H5 531 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 ATG4AQ8WYN0 398 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 ZNF599Q96NL3 588 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 IL12RB2Q99665 862 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 ATP13A3Q9H7F0 1226 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 PREBQ9HCU5 417 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 DONSONQ9NYP3 566 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 B4GALT6Q9UBX8 382 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 KLF15Q9UIH9 416 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 AMFRQ9UKV5 643 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 CDV3Q9UKY7 258 aaKnown RBP12.13□□□□□ -0.47
SCFD1-201ENST00000311943 RAI2Q9Y5P3 530 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 CABIN1Q9Y6J0 2220 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 TDRD6O60522 2096 aaKnown RBP12.12□□□□□ -0.47
SCFD1-201ENST00000311943 CXorf51AA0A1B0GTR3 108 aa12.12□□□□□ -0.47
SCFD1-201ENST00000311943 ENC1O14682 589 aa12.12□□□□□ -0.47
SCFD1-201ENST00000311943 SH3BP5O60239 455 aa12.12□□□□□ -0.47
SCFD1-201ENST00000311943 MYF5P13349 255 aa12.12□□□□□ -0.47
SCFD1-201ENST00000311943 CD59P13987 128 aa12.12□□□□□ -0.47
SCFD1-201ENST00000311943 SERPINA4P29622 427 aa12.12□□□□□ -0.47
SCFD1-201ENST00000311943 IGFALSP35858 605 aa12.12□□□□□ -0.47
SCFD1-201ENST00000311943 RWDD2BP57060 319 aa12.12□□□□□ -0.47
SCFD1-201ENST00000311943 RACK1P63244 317 aaKnown RBP12.12□□□□□ -0.47
SCFD1-201ENST00000311943 GALNT3Q14435 633 aa12.12□□□□□ -0.47
SCFD1-201ENST00000311943 PRKD1Q15139 912 aaPredicted RBP12.12□□□□□ -0.47
SCFD1-201ENST00000311943 PCSK7Q16549 785 aa12.12□□□□□ -0.47
SCFD1-201ENST00000311943 C17orf53Q8N3J3 647 aaPredicted RBP12.12□□□□□ -0.47
SCFD1-201ENST00000311943 DEFB124Q8NES8 71 aa12.12□□□□□ -0.47
SCFD1-201ENST00000311943 PIH1D2Q8WWB5 315 aa12.12□□□□□ -0.47
SCFD1-201ENST00000311943 P3H4Q92791 437 aa12.12□□□□□ -0.47
SCFD1-201ENST00000311943 HES6Q96HZ4 224 aa12.12□□□□□ -0.47
SCFD1-201ENST00000311943 LRIG1Q96JA1 1093 aa12.12□□□□□ -0.47
SCFD1-201ENST00000311943 GORASP1Q9BQQ3 440 aa12.12□□□□□ -0.47
SCFD1-201ENST00000311943 C1QTNF2Q9BXJ5 285 aa12.12□□□□□ -0.47
SCFD1-201ENST00000311943 OSBPL1AQ9BXW6 950 aa12.12□□□□□ -0.47
SCFD1-201ENST00000311943 TCEAL2Q9H3H9 227 aaPredicted RBP12.12□□□□□ -0.47
SCFD1-201ENST00000311943 TMEM9BQ9NQ34 198 aa12.12□□□□□ -0.47
SCFD1-201ENST00000311943 CD84Q9UIB8 345 aa12.12□□□□□ -0.47
SCFD1-201ENST00000311943 LCMT1Q9UIC8 334 aa12.12□□□□□ -0.47
SCFD1-201ENST00000311943 PYCARDQ9ULZ3 195 aa12.12□□□□□ -0.47
SCFD1-201ENST00000311943 ATP8A1Q9Y2Q0 1164 aa12.12□□□□□ -0.47
SCFD1-201ENST00000311943 FRYQ5TBA9 3013 aa12.11□□□□□ -0.47
SCFD1-201ENST00000311943 TSPAN11A1L157 253 aa12.11□□□□□ -0.47
SCFD1-201ENST00000311943 GOLGA6L6A8MZA4 724 aa12.11□□□□□ -0.47
SCFD1-201ENST00000311943 CASC3O15234 703 aaKnown RBP12.11□□□□□ -0.47
SCFD1-201ENST00000311943 HTRA2O43464 458 aaPredicted RBP12.11□□□□□ -0.47
SCFD1-201ENST00000311943 CCDC175P0C221 793 aa12.11□□□□□ -0.47
SCFD1-201ENST00000311943 C6P13671 934 aa12.11□□□□□ -0.47
SCFD1-201ENST00000311943 MMP12P39900 470 aa12.11□□□□□ -0.47
SCFD1-201ENST00000311943 CTSKP43235 329 aa12.11□□□□□ -0.47
SCFD1-201ENST00000311943 CHRNA4P43681 627 aa12.11□□□□□ -0.47
SCFD1-201ENST00000311943 CSNK1DP48730 415 aa12.11□□□□□ -0.47
SCFD1-201ENST00000311943 RENBPP51606 427 aa12.11□□□□□ -0.47
SCFD1-201ENST00000311943 SKOR1P84550 965 aa12.11□□□□□ -0.47
SCFD1-201ENST00000311943 RAD51Q06609 339 aa12.11□□□□□ -0.47
SCFD1-201ENST00000311943 WSCD2Q2TBF2 565 aa12.11□□□□□ -0.47
SCFD1-201ENST00000311943 BBS12Q6ZW61 710 aa12.11□□□□□ -0.47
SCFD1-201ENST00000311943 HSD11B1LQ7Z5J1 315 aa12.11□□□□□ -0.47
SCFD1-201ENST00000311943 PTCD2Q8WV60 388 aaKnown RBP12.11□□□□□ -0.47
SCFD1-201ENST00000311943 CENPTQ96BT3 561 aa12.11□□□□□ -0.47
SCFD1-201ENST00000311943 FEM1CQ96JP0 617 aa12.11□□□□□ -0.47
SCFD1-201ENST00000311943 SMARCAL1Q9NZC9 954 aa12.11□□□□□ -0.47
SCFD1-201ENST00000311943 DKK3Q9UBP4 350 aa12.11□□□□□ -0.47
SCFD1-201ENST00000311943 OR1A2Q9Y585 309 aa12.11□□□□□ -0.47
SCFD1-201ENST00000311943 MED19A0JLT2 244 aaPredicted RBP12.11□□□□□ -0.47
SCFD1-201ENST00000311943 CCDC66A2RUB6 948 aa12.11□□□□□ -0.47
SCFD1-201ENST00000311943 TLR4O00206 839 aa12.11□□□□□ -0.47
SCFD1-201ENST00000311943 FZD6O60353 706 aa12.11□□□□□ -0.47
SCFD1-201ENST00000311943 PGLSO95336 258 aa12.11□□□□□ -0.47
SCFD1-201ENST00000311943 THEGLP0DJG4 465 aa12.11□□□□□ -0.47
SCFD1-201ENST00000311943 HNF1BP35680 557 aa12.11□□□□□ -0.47
SCFD1-201ENST00000311943 ATXN3P54252 364 aaPredicted RBP12.11□□□□□ -0.47
SCFD1-201ENST00000311943 GDF10P55107 478 aa12.11□□□□□ -0.47
SCFD1-201ENST00000311943 RPS21P63220 83 aaKnown RBP12.11□□□□□ -0.47
SCFD1-201ENST00000311943 CFAP58Q5T655 872 aa12.11□□□□□ -0.47
SCFD1-201ENST00000311943 NAPEPLDQ6IQ20 393 aa12.11□□□□□ -0.47
SCFD1-201ENST00000311943 LIPIQ6XZB0 460 aa12.11□□□□□ -0.47
SCFD1-201ENST00000311943 Q6ZSR6 202 aa12.11□□□□□ -0.47
SCFD1-201ENST00000311943 REXO1L1PQ8IX06 675 aa12.11□□□□□ -0.47
SCFD1-201ENST00000311943 ZNF567Q8N184 647 aa12.11□□□□□ -0.47
SCFD1-201ENST00000311943 CEP76Q8TAP6 659 aa12.11□□□□□ -0.47
SCFD1-201ENST00000311943 EID2BQ96D98 161 aa12.11□□□□□ -0.47
SCFD1-201ENST00000311943 PDLIM2Q96JY6 352 aa12.11□□□□□ -0.47
SCFD1-201ENST00000311943 ZNF641Q96N77 438 aaPredicted RBP12.11□□□□□ -0.47
SCFD1-201ENST00000311943 POLR1EQ9GZS1 481 aaKnown RBP12.11□□□□□ -0.47
SCFD1-201ENST00000311943 PCED1AQ9H1Q7 454 aa12.11□□□□□ -0.47
SCFD1-201ENST00000311943 KDM4CQ9H3R0 1056 aa12.11□□□□□ -0.47
SCFD1-201ENST00000311943 UCKL1Q9NWZ5 548 aa12.11□□□□□ -0.47
SCFD1-201ENST00000311943 SPAARA0A1B0GVQ0 90 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 ZNF487B1APH4 448 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 SLC30A4O14863 429 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 AURKAO14965 403 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 VILLO15195 856 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 PMPCBO75439 489 aa12.1□□□□□ -0.47
SCFD1-201ENST00000311943 NFKB1P19838 968 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms