RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 PES1O00541 588 aaKnown RBP14.9□□□□□ -0.02
CCDC88B-201ENST00000301897 NOBOXO60393 691 aa14.9□□□□□ -0.02
CCDC88B-201ENST00000301897 CELA2BP08218 269 aaPredicted RBP14.9□□□□□ -0.02
CCDC88B-201ENST00000301897 MMEP08473 750 aa14.9□□□□□ -0.02
CCDC88B-201ENST00000301897 GLB1P16278 677 aa14.9□□□□□ -0.02
CCDC88B-201ENST00000301897 MMP8P22894 467 aa14.9□□□□□ -0.02
CCDC88B-201ENST00000301897 INPP5AQ14642 412 aa14.9□□□□□ -0.02
CCDC88B-201ENST00000301897 UGP2Q16851 508 aa14.9□□□□□ -0.02
CCDC88B-201ENST00000301897 C15orf59Q2T9L4 293 aaPredicted RBP14.9□□□□□ -0.02
CCDC88B-201ENST00000301897 MIIPQ5JXC2 388 aa14.9□□□□□ -0.02
CCDC88B-201ENST00000301897 MANEAQ5SRI9 462 aa14.9□□□□□ -0.02
CCDC88B-201ENST00000301897 CFAP58Q5T655 872 aa14.9□□□□□ -0.02
CCDC88B-201ENST00000301897 FAM72AQ5TYM5 149 aa14.9□□□□□ -0.02
CCDC88B-201ENST00000301897 FAM72DQ6L9T8 149 aa14.9□□□□□ -0.02
CCDC88B-201ENST00000301897 TRIM72Q6ZMU5 477 aa14.9□□□□□ -0.02
CCDC88B-201ENST00000301897 ATG14Q6ZNE5 492 aa14.9□□□□□ -0.02
CCDC88B-201ENST00000301897 FAM72BQ86X60 149 aa14.9□□□□□ -0.02
CCDC88B-201ENST00000301897 RTL3Q8N8U3 475 aaKnown RBP14.9□□□□□ -0.02
CCDC88B-201ENST00000301897 HMCESQ96FZ2 354 aa14.9□□□□□ -0.02
CCDC88B-201ENST00000301897 ZNF641Q96N77 438 aaPredicted RBP14.9□□□□□ -0.02
CCDC88B-201ENST00000301897 CMKLR1Q99788 373 aa14.9□□□□□ -0.02
CCDC88B-201ENST00000301897 SEMA3CQ99985 751 aa14.9□□□□□ -0.02
CCDC88B-201ENST00000301897 AKAP7Q9P0M2 348 aaPredicted RBP14.9□□□□□ -0.02
CCDC88B-201ENST00000301897 A0A1W2PQC6 194 aa14.89□□□□□ -0.03
CCDC88B-201ENST00000301897 A0A1W2PQM1 296 aa14.89□□□□□ -0.03
CCDC88B-201ENST00000301897 TSPAN11A1L157 253 aa14.89□□□□□ -0.03
CCDC88B-201ENST00000301897 CFAP69A5D8W1 941 aa14.89□□□□□ -0.03
CCDC88B-201ENST00000301897 ZW10O43264 779 aa14.89□□□□□ -0.03
CCDC88B-201ENST00000301897 KELP23276 732 aa14.89□□□□□ -0.03
CCDC88B-201ENST00000301897 EPHB2P29323 1055 aa14.89□□□□□ -0.03
CCDC88B-201ENST00000301897 CDR2Q01850 454 aa14.89□□□□□ -0.03
CCDC88B-201ENST00000301897 C1QBPQ07021 282 aaKnown RBP14.89□□□□□ -0.03
CCDC88B-201ENST00000301897 ZFP36L1Q07352 338 aaKnown RBP14.89□□□□□ -0.03
CCDC88B-201ENST00000301897 SERINC3Q13530 473 aa14.89□□□□□ -0.03
CCDC88B-201ENST00000301897 LINC00303Q3SY05 128 aa14.89□□□□□ -0.03
CCDC88B-201ENST00000301897 EFHC2Q5JST6 749 aa14.89□□□□□ -0.03
CCDC88B-201ENST00000301897 CERCAMQ5T4B2 595 aa14.89□□□□□ -0.03
CCDC88B-201ENST00000301897 OGFOD3Q6PK18 319 aa14.89□□□□□ -0.03
CCDC88B-201ENST00000301897 RD3Q7Z3Z2 195 aa14.89□□□□□ -0.03
CCDC88B-201ENST00000301897 SLFN11Q7Z7L1 901 aa14.89□□□□□ -0.03
CCDC88B-201ENST00000301897 FAM172AQ8WUF8 416 aa14.89□□□□□ -0.03
CCDC88B-201ENST00000301897 TUBGCP5Q96RT8 1024 aa14.89□□□□□ -0.03
CCDC88B-201ENST00000301897 SUV39H2Q9H5I1 410 aa14.89□□□□□ -0.03
CCDC88B-201ENST00000301897 CATSPERBQ9H7T0 1116 aa14.89□□□□□ -0.03
CCDC88B-201ENST00000301897 PCDH12Q9NPG4 1184 aa14.89□□□□□ -0.03
CCDC88B-201ENST00000301897 DAAM1Q9Y4D1 1078 aa14.89□□□□□ -0.03
CCDC88B-201ENST00000301897 ARHGEF17Q96PE2 2063 aaPredicted RBP14.89□□□□□ -0.03
CCDC88B-201ENST00000301897 RASA4BC9J798 803 aa14.88□□□□□ -0.03
CCDC88B-201ENST00000301897 CACNB4O00305 520 aaPredicted RBP14.88□□□□□ -0.03
CCDC88B-201ENST00000301897 TNFRSF10CO14798 259 aa14.88□□□□□ -0.03
CCDC88B-201ENST00000301897 CASC3O15234 703 aaKnown RBP14.88□□□□□ -0.03
CCDC88B-201ENST00000301897 RASA4O43374 803 aa14.88□□□□□ -0.03
CCDC88B-201ENST00000301897 CYP1A1P04798 512 aaPredicted RBP14.88□□□□□ -0.03
CCDC88B-201ENST00000301897 HOXC4P09017 264 aaPredicted RBP14.88□□□□□ -0.03
CCDC88B-201ENST00000301897 KRT3P12035 628 aa14.88□□□□□ -0.03
CCDC88B-201ENST00000301897 HGFP14210 728 aa14.88□□□□□ -0.03
CCDC88B-201ENST00000301897 ERCC5P28715 1186 aaPredicted RBP14.88□□□□□ -0.03
CCDC88B-201ENST00000301897 HTR7P34969 479 aa14.88□□□□□ -0.03
CCDC88B-201ENST00000301897 MMP12P39900 470 aa14.88□□□□□ -0.03
CCDC88B-201ENST00000301897 AIF1P55008 147 aa14.88□□□□□ -0.03
CCDC88B-201ENST00000301897 HDAC4P56524 1084 aa14.88□□□□□ -0.03
CCDC88B-201ENST00000301897 GSCP56915 257 aaPredicted RBP14.88□□□□□ -0.03
CCDC88B-201ENST00000301897 KIAA1024LP59773 190 aa14.88□□□□□ -0.03
CCDC88B-201ENST00000301897 ARHGEF7Q14155 803 aa14.88□□□□□ -0.03
CCDC88B-201ENST00000301897 CAMK4Q16566 473 aa14.88□□□□□ -0.03
CCDC88B-201ENST00000301897 TMEM164Q5U3C3 297 aa14.88□□□□□ -0.03
CCDC88B-201ENST00000301897 TAF8Q7Z7C8 310 aa14.88□□□□□ -0.03
CCDC88B-201ENST00000301897 UMODL1-AS1Q8N2C9 162 aa14.88□□□□□ -0.03
CCDC88B-201ENST00000301897 CCDC185Q8N715 623 aa14.88□□□□□ -0.03
CCDC88B-201ENST00000301897 OR56A4Q8NGH8 313 aa14.88□□□□□ -0.03
CCDC88B-201ENST00000301897 KIAA1524Q8TCG1 905 aa14.88□□□□□ -0.03
CCDC88B-201ENST00000301897 GPT2Q8TD30 523 aa14.88□□□□□ -0.03
CCDC88B-201ENST00000301897 EXTL1Q92935 676 aa14.88□□□□□ -0.03
CCDC88B-201ENST00000301897 NOL6Q9H6R4 1146 aaKnown RBP14.88□□□□□ -0.03
CCDC88B-201ENST00000301897 UBA2Q9UBT2 640 aaPredicted RBP14.88□□□□□ -0.03
CCDC88B-201ENST00000301897 DACH1Q9UI36 760 aa14.88□□□□□ -0.03
CCDC88B-201ENST00000301897 NOCTQ9UK39 431 aaKnown RBP14.88□□□□□ -0.03
CCDC88B-201ENST00000301897 ATP8A1Q9Y2Q0 1164 aa14.88□□□□□ -0.03
CCDC88B-201ENST00000301897 COQ6Q9Y2Z9 468 aa14.88□□□□□ -0.03
CCDC88B-201ENST00000301897 OR1A2Q9Y585 309 aa14.88□□□□□ -0.03
CCDC88B-201ENST00000301897 COL12A1Q99715 3063 aa14.88□□□□□ -0.03
CCDC88B-201ENST00000301897 FAM170AA1A519 330 aa14.87□□□□□ -0.03
CCDC88B-201ENST00000301897 ANKRD62A6NC57 917 aa14.87□□□□□ -0.03
CCDC88B-201ENST00000301897 WASH4PA8MWX3 477 aa14.87□□□□□ -0.03
CCDC88B-201ENST00000301897 PYCARD-AS1I3L0S3 204 aa14.87□□□□□ -0.03
CCDC88B-201ENST00000301897 TERTO14746 1132 aaKnown RBP14.87□□□□□ -0.03
CCDC88B-201ENST00000301897 FGF10O15520 208 aaPredicted RBP14.87□□□□□ -0.03
CCDC88B-201ENST00000301897 NUDT21O43809 227 aaKnown RBP14.87□□□□□ -0.03
CCDC88B-201ENST00000301897 PCCBP05166 539 aa14.87□□□□□ -0.03
CCDC88B-201ENST00000301897 DESP17661 470 aa14.87□□□□□ -0.03
CCDC88B-201ENST00000301897 ITIH2P19823 946 aa14.87□□□□□ -0.03
CCDC88B-201ENST00000301897 LIG3P49916 1009 aa14.87□□□□□ -0.03
CCDC88B-201ENST00000301897 UBE2HP62256 183 aa14.87□□□□□ -0.03
CCDC88B-201ENST00000301897 TGIF1Q15583 401 aa14.87□□□□□ -0.03
CCDC88B-201ENST00000301897 CLPPQ16740 277 aaPredicted RBP14.87□□□□□ -0.03
CCDC88B-201ENST00000301897 TSR1Q2NL82 804 aaKnown RBP14.87□□□□□ -0.03
CCDC88B-201ENST00000301897 C14orf28Q4W4Y0 310 aa14.87□□□□□ -0.03
CCDC88B-201ENST00000301897 RAB6CQ53S08 254 aa14.87□□□□□ -0.03
CCDC88B-201ENST00000301897 SPRED1Q7Z699 444 aa14.87□□□□□ -0.03
CCDC88B-201ENST00000301897 Q8N9G6 341 aaPredicted RBP14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms