RNA–Protein interactions for RNA: ENST00000291386.3

SSU72-201, Transcript of SSU72 homolog, RNA polymerase II CTD phosphatase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSU72, Length 1,290 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72-201ENST00000291386 CAPN10Q9HC96 672 aa27.08■■□□□ 1.93
SSU72-201ENST00000291386 CFAP69A5D8W1 941 aa27.07■■□□□ 1.92
SSU72-201ENST00000291386 NEMP1O14524 444 aa27.07■■□□□ 1.92
SSU72-201ENST00000291386 KHNYNO15037 678 aaKnown RBP27.07■■□□□ 1.92
SSU72-201ENST00000291386 ITIH2P19823 946 aa27.07■■□□□ 1.92
SSU72-201ENST00000291386 NFKBIAP25963 317 aa27.07■■□□□ 1.92
SSU72-201ENST00000291386 MMP12P39900 470 aa27.07■■□□□ 1.92
SSU72-201ENST00000291386 CD86P42081 329 aa27.07■■□□□ 1.92
SSU72-201ENST00000291386 RPL26P61254 145 aaKnown RBP27.07■■□□□ 1.92
SSU72-201ENST00000291386 RACK1P63244 317 aaKnown RBP27.07■■□□□ 1.92
SSU72-201ENST00000291386 CCDC6Q16204 474 aa27.07■■□□□ 1.92
SSU72-201ENST00000291386 TRIM61Q5EBN2 209 aa27.07■■□□□ 1.92
SSU72-201ENST00000291386 LRRC73Q5JTD7 316 aa27.07■■□□□ 1.92
SSU72-201ENST00000291386 SEL1L3Q68CR1 1132 aa27.07■■□□□ 1.92
SSU72-201ENST00000291386 ZCCHC9Q8N567 271 aaKnown RBP27.07■■□□□ 1.92
SSU72-201ENST00000291386 PBKQ96KB5 322 aa27.07■■□□□ 1.92
SSU72-201ENST00000291386 SLC17A9Q9BYT1 436 aa27.07■■□□□ 1.92
SSU72-201ENST00000291386 C10orf88Q9H8K7 445 aa27.07■■□□□ 1.92
SSU72-201ENST00000291386 TM9SF3Q9HD45 589 aa27.07■■□□□ 1.92
SSU72-201ENST00000291386 KLHL8Q9P2G9 620 aaPredicted RBP27.07■■□□□ 1.92
SSU72-201ENST00000291386 SLC6A14Q9UN76 642 aa27.07■■□□□ 1.92
SSU72-201ENST00000291386 RPL26L1Q9UNX3 145 aaKnown RBP27.07■■□□□ 1.92
SSU72-201ENST00000291386 SLCO1B1Q9Y6L6 691 aa27.07■■□□□ 1.92
SSU72-201ENST00000291386 CACNA1EQ15878 2313 aa27.06■■□□□ 1.92
SSU72-201ENST00000291386 ZNF292O60281 2723 aa27.06■■□□□ 1.92
SSU72-201ENST00000291386 PATE3B3GLJ2 98 aa27.06■■□□□ 1.92
SSU72-201ENST00000291386 PRLP01236 227 aa27.06■■□□□ 1.92
SSU72-201ENST00000291386 PDHA1P08559 390 aa27.06■■□□□ 1.92
SSU72-201ENST00000291386 MAT2AP31153 395 aaKnown RBP27.06■■□□□ 1.92
SSU72-201ENST00000291386 HOXD11P31277 338 aaPredicted RBP27.06■■□□□ 1.92
SSU72-201ENST00000291386 NAPEPLDQ6IQ20 393 aa27.06■■□□□ 1.92
SSU72-201ENST00000291386 PRR23CQ6ZRP0 262 aa27.06■■□□□ 1.92
SSU72-201ENST00000291386 DPPA4Q7L190 304 aa27.06■■□□□ 1.92
SSU72-201ENST00000291386 PID1Q7Z2X4 250 aa27.06■■□□□ 1.92
SSU72-201ENST00000291386 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP27.06■■□□□ 1.92
SSU72-201ENST00000291386 PAF1Q8N7H5 531 aa27.06■■□□□ 1.92
SSU72-201ENST00000291386 CXorf40AQ8TE69 158 aa27.06■■□□□ 1.92
SSU72-201ENST00000291386 PDCD6IPQ8WUM4 868 aaKnown RBP27.06■■□□□ 1.92
SSU72-201ENST00000291386 MAIP1Q8WWC4 291 aa27.06■■□□□ 1.92
SSU72-201ENST00000291386 FCRL5Q96RD9 977 aa27.06■■□□□ 1.92
SSU72-201ENST00000291386 MCCC1Q96RQ3 725 aaPredicted RBP27.06■■□□□ 1.92
SSU72-201ENST00000291386 SMOC1Q9H4F8 434 aa27.06■■□□□ 1.92
SSU72-201ENST00000291386 ZKSCAN5Q9Y2L8 839 aa27.06■■□□□ 1.92
SSU72-201ENST00000291386 GVINP1Q7Z2Y8 2422 aa27.06■■□□□ 1.92
SSU72-201ENST00000291386 PRAMEF26H0Y7S4 382 aa27.05■■□□□ 1.92
SSU72-201ENST00000291386 GRIA4P48058 902 aa27.05■■□□□ 1.92
SSU72-201ENST00000291386 AFF3P51826 1226 aaKnown RBP27.05■■□□□ 1.92
SSU72-201ENST00000291386 SIX1Q15475 284 aaPredicted RBP27.05■■□□□ 1.92
SSU72-201ENST00000291386 FAM182AQ5T1J6 154 aa27.05■■□□□ 1.92
SSU72-201ENST00000291386 NDUFAF2Q8N183 169 aa27.05■■□□□ 1.92
SSU72-201ENST00000291386 RASGEF1CQ8N431 466 aa27.05■■□□□ 1.92
SSU72-201ENST00000291386 SCRN2Q96FV2 425 aa27.05■■□□□ 1.92
SSU72-201ENST00000291386 RBM15Q96T37 977 aaKnown RBP eCLIP27.05■■□□□ 1.924e-7■■■□□ 14.7
SSU72-201ENST00000291386 NUSAP1Q9BXS6 441 aaKnown RBP27.05■■□□□ 1.92
SSU72-201ENST00000291386 PCDH9Q9HC56 1237 aa27.05■■□□□ 1.92
SSU72-201ENST00000291386 DNPEPQ9ULA0 475 aa27.05■■□□□ 1.92
SSU72-201ENST00000291386 PCDH15Q96QU1 1955 aa27.05■■□□□ 1.92
SSU72-201ENST00000291386 LRRK1Q38SD2 2015 aa27.05■■□□□ 1.92
SSU72-201ENST00000291386 KCNN4O15554 427 aa27.04■■□□□ 1.92
SSU72-201ENST00000291386 CEP104O60308 925 aa27.04■■□□□ 1.92
SSU72-201ENST00000291386 STK10O94804 968 aaKnown RBP27.04■■□□□ 1.92
SSU72-201ENST00000291386 FGGP02679 453 aa27.04■■□□□ 1.92
SSU72-201ENST00000291386 ATP1A1P05023 1023 aaKnown RBP27.04■■□□□ 1.92
SSU72-201ENST00000291386 NFKB1P19838 968 aa27.04■■□□□ 1.92
SSU72-201ENST00000291386 CXCR5P32302 372 aa27.04■■□□□ 1.92
SSU72-201ENST00000291386 RALGDSQ12967 914 aa27.04■■□□□ 1.92
SSU72-201ENST00000291386 FGL2Q14314 439 aa27.04■■□□□ 1.92
SSU72-201ENST00000291386 TMEM145Q8NBT3 493 aa27.04■■□□□ 1.92
SSU72-201ENST00000291386 SERAC1Q96JX3 654 aa27.04■■□□□ 1.92
SSU72-201ENST00000291386 LENG8Q96PV6 779 aaPredicted RBP27.04■■□□□ 1.92
SSU72-201ENST00000291386 TTC7AQ9ULT0 858 aaPredicted RBP27.04■■□□□ 1.92
SSU72-201ENST00000291386 CHKBQ9Y259 395 aa27.04■■□□□ 1.92
SSU72-201ENST00000291386 A0A1W2PR77 199 aa27.03■■□□□ 1.92
SSU72-201ENST00000291386 C5orf60A6NFR6 353 aa27.03■■□□□ 1.92
SSU72-201ENST00000291386 IGLON5A6NGN9 336 aa27.03■■□□□ 1.92
SSU72-201ENST00000291386 LIASO43766 372 aa27.03■■□□□ 1.92
SSU72-201ENST00000291386 MMP20O60882 483 aa27.03■■□□□ 1.92
SSU72-201ENST00000291386 PRKCGP05129 697 aa27.03■■□□□ 1.92
SSU72-201ENST00000291386 HNRNPA2B1P22626 353 aaKnown RBP27.03■■□□□ 1.92
SSU72-201ENST00000291386 FAM193AP78312 1265 aa27.03■■□□□ 1.92
SSU72-201ENST00000291386 IRX4P78413 519 aa27.03■■□□□ 1.92
SSU72-201ENST00000291386 AGERQ15109 404 aa27.03■■□□□ 1.92
SSU72-201ENST00000291386 SF3A2Q15428 464 aaKnown RBP27.03■■□□□ 1.92
SSU72-201ENST00000291386 OASLQ15646 514 aaKnown RBP27.03■■□□□ 1.92
SSU72-201ENST00000291386 ANKRD20A2Q5SQ80 823 aa27.03■■□□□ 1.92
SSU72-201ENST00000291386 ANKRD20A1Q5TYW2 823 aa27.03■■□□□ 1.92
SSU72-201ENST00000291386 ANKRD20A3Q5VUR7 823 aa27.03■■□□□ 1.92
SSU72-201ENST00000291386 ITPRIPL1Q6GPH6 555 aa27.03■■□□□ 1.92
SSU72-201ENST00000291386 TCEAL6Q6IPX3 200 aa27.03■■□□□ 1.92
SSU72-201ENST00000291386 TCEAL3Q969E4 200 aa27.03■■□□□ 1.92
SSU72-201ENST00000291386 SLC6A18Q96N87 628 aa27.03■■□□□ 1.92
SSU72-201ENST00000291386 SPATA13Q96N96 652 aa27.03■■□□□ 1.92
SSU72-201ENST00000291386 TRIB3Q96RU7 358 aa27.03■■□□□ 1.92
SSU72-201ENST00000291386 B4GALT6Q9UBX8 382 aa27.03■■□□□ 1.92
SSU72-201ENST00000291386 PTPRZ1P23471 2315 aaPredicted RBP27.02■■□□□ 1.92
SSU72-201ENST00000291386 A0A0J9YYE9 177 aa27.02■■□□□ 1.92
SSU72-201ENST00000291386 CES2O00748 559 aa27.02■■□□□ 1.92
SSU72-201ENST00000291386 SLC31A1O15431 190 aa27.02■■□□□ 1.92
SSU72-201ENST00000291386 TM7SF2O76062 418 aa27.02■■□□□ 1.92
SSU72-201ENST00000291386 PAK4O96013 591 aaPredicted RBP27.02■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms