RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 IFT88Q13099 833 aa16.61■□□□□ 0.25
USP4-201ENST00000265560 DGKKQ5KSL6 1271 aa16.61■□□□□ 0.25
USP4-201ENST00000265560 RAPH1Q70E73 1250 aa16.61■□□□□ 0.25
USP4-201ENST00000265560 FAM217AQ8IXS0 508 aa16.61■□□□□ 0.25
USP4-201ENST00000265560 ZNF366Q8N895 744 aa16.61■□□□□ 0.25
USP4-201ENST00000265560 MDGA1Q8NFP4 955 aa16.61■□□□□ 0.25
USP4-201ENST00000265560 LRRC8CQ8TDW0 803 aa16.61■□□□□ 0.25
USP4-201ENST00000265560 ZNF75CPQ92670 426 aaPredicted RBP16.61■□□□□ 0.25
USP4-201ENST00000265560 MTG2Q9H4K7 406 aa16.61■□□□□ 0.25
USP4-201ENST00000265560 SPRP35270 261 aaPredicted RBP16.6■□□□□ 0.25
USP4-201ENST00000265560 ETV4P43268 484 aa16.6■□□□□ 0.25
USP4-201ENST00000265560 GLRBP48167 497 aa16.6■□□□□ 0.25
USP4-201ENST00000265560 MESP2Q0VG99 397 aa16.6■□□□□ 0.25
USP4-201ENST00000265560 N4BP2L1Q5TBK1 243 aaPredicted RBP16.6■□□□□ 0.25
USP4-201ENST00000265560 CGB2Q6NT52 195 aa16.6■□□□□ 0.25
USP4-201ENST00000265560 TRIB3Q96RU7 358 aa16.6■□□□□ 0.25
USP4-201ENST00000265560 PLLPQ9Y342 182 aa16.6■□□□□ 0.25
USP4-201ENST00000265560 C2orf16Q68DN1 1984 aa16.6■□□□□ 0.25
USP4-201ENST00000265560 EBAG9O00559 213 aa16.6■□□□□ 0.25
USP4-201ENST00000265560 KCNA4P22459 653 aa16.6■□□□□ 0.25
USP4-201ENST00000265560 LIMK2P53671 638 aa16.6■□□□□ 0.25
USP4-201ENST00000265560 RBM20Q5T481 1227 aaKnown RBP16.6■□□□□ 0.25
USP4-201ENST00000265560 GRTP1Q5TC63 336 aa16.6■□□□□ 0.25
USP4-201ENST00000265560 ZC3HC1Q86WB0 502 aaKnown RBP16.6■□□□□ 0.25
USP4-201ENST00000265560 C2orf49Q9BVC5 232 aaPredicted RBP16.6■□□□□ 0.25
USP4-201ENST00000265560 TDRD1Q9BXT4 1180 aaKnown RBP16.6■□□□□ 0.25
USP4-201ENST00000265560 PITPNM3Q9BZ71 974 aa16.6■□□□□ 0.25
USP4-201ENST00000265560 TMEM216Q9P0N5 145 aa16.6■□□□□ 0.25
USP4-201ENST00000265560 CPSF2Q9P2I0 782 aaKnown RBP16.6■□□□□ 0.25
USP4-201ENST00000265560 NDST3O95803 873 aa16.59■□□□□ 0.25
USP4-201ENST00000265560 LATS1O95835 1130 aa16.59■□□□□ 0.25
USP4-201ENST00000265560 SERPINB4P48594 390 aa16.59■□□□□ 0.25
USP4-201ENST00000265560 USP10Q14694 798 aaKnown RBP16.59■□□□□ 0.25
USP4-201ENST00000265560 FUT11Q495W5 492 aa16.59■□□□□ 0.25
USP4-201ENST00000265560 GKAP1Q5VSY0 366 aaPredicted RBP16.59■□□□□ 0.25
USP4-201ENST00000265560 CES4AQ5XG92 561 aa16.59■□□□□ 0.25
USP4-201ENST00000265560 ADGRG2Q8IZP9 1017 aa16.59■□□□□ 0.25
USP4-201ENST00000265560 CYB5D2Q8WUJ1 264 aa16.59■□□□□ 0.25
USP4-201ENST00000265560 IRF7Q92985 503 aa16.59■□□□□ 0.25
USP4-201ENST00000265560 MTBPQ96DY7 904 aa16.59■□□□□ 0.25
USP4-201ENST00000265560 ABHD8Q96I13 439 aa16.59■□□□□ 0.25
USP4-201ENST00000265560 FEM1CQ96JP0 617 aa16.59■□□□□ 0.25
USP4-201ENST00000265560 FAM96AQ9H5X1 160 aa16.59■□□□□ 0.25
USP4-201ENST00000265560 ATG2AQ2TAZ0 1938 aa16.59■□□□□ 0.25
USP4-201ENST00000265560 ANTXRLA6NF34 631 aa16.59■□□□□ 0.25
USP4-201ENST00000265560 AP3B1O00203 1094 aa16.59■□□□□ 0.25
USP4-201ENST00000265560 CDKN1CP49918 316 aaPredicted RBP16.59■□□□□ 0.25
USP4-201ENST00000265560 GET4Q7L5D6 327 aaPredicted RBP16.59■□□□□ 0.25
USP4-201ENST00000265560 CEP97Q8IW35 865 aa16.59■□□□□ 0.25
USP4-201ENST00000265560 CPXM2Q8N436 756 aa16.59■□□□□ 0.25
USP4-201ENST00000265560 OR4K2Q8NGD2 314 aa16.59■□□□□ 0.25
USP4-201ENST00000265560 FIBINQ8TAL6 211 aa16.59■□□□□ 0.25
USP4-201ENST00000265560 ALKBH8Q96BT7 664 aaKnown RBP16.59■□□□□ 0.25
USP4-201ENST00000265560 KIAA1522Q9P206 1035 aaPredicted RBP16.59■□□□□ 0.25
USP4-201ENST00000265560 FBXO5Q9UKT4 447 aa16.59■□□□□ 0.25
USP4-201ENST00000265560 A0A096LPK6 155 aa16.59■□□□□ 0.25
USP4-201ENST00000265560 PITRM1Q5JRX3 1037 aa16.59■□□□□ 0.25
USP4-201ENST00000265560 DCAF4L2Q8NA75 395 aa16.59■□□□□ 0.25
USP4-201ENST00000265560 CCDC134Q9H6E4 229 aa16.59■□□□□ 0.25
USP4-201ENST00000265560 ZDHHC4Q9NPG8 344 aa16.59■□□□□ 0.25
USP4-201ENST00000265560 CCDC162PA2VCL2 907 aa16.58■□□□□ 0.24
USP4-201ENST00000265560 C2P06681 752 aa16.58■□□□□ 0.24
USP4-201ENST00000265560 EPHB1P54762 984 aa16.58■□□□□ 0.24
USP4-201ENST00000265560 TNK2Q07912 1038 aa16.58■□□□□ 0.24
USP4-201ENST00000265560 PDK4Q16654 411 aa16.58■□□□□ 0.24
USP4-201ENST00000265560 NAIF1Q69YI7 327 aaPredicted RBP16.58■□□□□ 0.24
USP4-201ENST00000265560 GLT6D1Q7Z4J2 308 aa16.58■□□□□ 0.24
USP4-201ENST00000265560 ASIC4Q96FT7 647 aa16.58■□□□□ 0.24
USP4-201ENST00000265560 PPP1R2P1Q96PQ5 205 aa16.58■□□□□ 0.24
USP4-201ENST00000265560 NUDCD1Q96RS6 583 aa16.58■□□□□ 0.24
USP4-201ENST00000265560 SPHK2Q9NRA0 654 aa16.58■□□□□ 0.24
USP4-201ENST00000265560 EMCNQ9ULC0 261 aa16.58■□□□□ 0.24
USP4-201ENST00000265560 PHTF1Q9UMS5 762 aa16.58■□□□□ 0.24
USP4-201ENST00000265560 MROH6A6NGR9 719 aa16.58■□□□□ 0.24
USP4-201ENST00000265560 ANKRD66B4E2M5 251 aa16.58■□□□□ 0.24
USP4-201ENST00000265560 TM9SF1O15321 606 aa16.58■□□□□ 0.24
USP4-201ENST00000265560 HNRNPA1P09651 372 aaKnown RBP eCLIP16.58■□□□□ 0.24
USP4-201ENST00000265560 HLA-DPA1P20036 260 aa16.58■□□□□ 0.24
USP4-201ENST00000265560 SEMA3AQ14563 771 aa16.58■□□□□ 0.24
USP4-201ENST00000265560 ZNF77Q15935 545 aa16.58■□□□□ 0.24
USP4-201ENST00000265560 POM121L1PQ3SYA9 428 aa16.58■□□□□ 0.24
USP4-201ENST00000265560 TMEM215Q68D42 235 aa16.58■□□□□ 0.24
USP4-201ENST00000265560 RETSATQ6NUM9 610 aa16.58■□□□□ 0.24
USP4-201ENST00000265560 ELMO2Q96JJ3 720 aa16.58■□□□□ 0.24
USP4-201ENST00000265560 CABS1Q96KC9 395 aa16.58■□□□□ 0.24
USP4-201ENST00000265560 EBF3Q9H4W6 596 aa16.58■□□□□ 0.24
USP4-201ENST00000265560 MANSC1Q9H8J5 431 aa16.58■□□□□ 0.24
USP4-201ENST00000265560 HELZP42694 1942 aaKnown RBP16.58■□□□□ 0.24
USP4-201ENST00000265560 OTOL1A6NHN0 477 aaPredicted RBP16.57■□□□□ 0.24
USP4-201ENST00000265560 ZNF821O75541 412 aaPredicted RBP16.57■□□□□ 0.24
USP4-201ENST00000265560 GOT2P00505 430 aaKnown RBP16.57■□□□□ 0.24
USP4-201ENST00000265560 FGF1P05230 155 aa16.57■□□□□ 0.24
USP4-201ENST00000265560 PAMP19021 973 aa16.57■□□□□ 0.24
USP4-201ENST00000265560 ALG1LQ6GMV1 187 aa16.57■□□□□ 0.24
USP4-201ENST00000265560 NCEH1Q6PIU2 408 aa16.57■□□□□ 0.24
USP4-201ENST00000265560 CACNA2D3Q8IZS8 1091 aa16.57■□□□□ 0.24
USP4-201ENST00000265560 PRKAG3Q9UGI9 489 aa16.57■□□□□ 0.24
USP4-201ENST00000265560 ZNF510Q9Y2H8 683 aa16.57■□□□□ 0.24
USP4-201ENST00000265560 BRSK1Q8TDC3 778 aa16.57■□□□□ 0.24
USP4-201ENST00000265560 SSU72Q9NP77 194 aaKnown RBP16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms