RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 FAM124BQ9H5Z6 455 aaPredicted RBP12.73□□□□□ -0.37
LIG1-201ENST00000263274 EML4Q9HC35 981 aaKnown RBP12.73□□□□□ -0.37
LIG1-201ENST00000263274 NMRK2Q9NPI5 230 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 BTRCQ9Y297 605 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 COMMD10Q9Y6G5 202 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 LAMA3Q16787 3333 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 PDE4DIPQ5VU43 2346 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 PRORSD1PA6NEY8 169 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 VILLO15195 856 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 SIX3O95343 332 aaPredicted RBP12.72□□□□□ -0.37
LIG1-201ENST00000263274 HSPA8P11142 646 aaKnown RBP12.72□□□□□ -0.37
LIG1-201ENST00000263274 CCR1P32246 355 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 CD86P42081 329 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 MAGEA12P43365 314 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 SULT2A1Q06520 285 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 LPCAT2Q7L5N7 544 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 GPR142Q7Z601 462 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 DHFR2Q86XF0 187 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 FAM47BQ8NA70 645 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 SMG8Q8ND04 991 aaKnown RBP12.72□□□□□ -0.37
LIG1-201ENST00000263274 CANT1Q8WVQ1 401 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 HDAC10Q969S8 669 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 PBXIP1Q96AQ6 731 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 TUBGCP3Q96CW5 907 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 OLFM1Q99784 485 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 KIFC1Q9BW19 673 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 MRPS26Q9BYN8 205 aaKnown RBP12.72□□□□□ -0.37
LIG1-201ENST00000263274 IPO11Q9UI26 975 aaKnown RBP12.72□□□□□ -0.37
LIG1-201ENST00000263274 TCAF1Q9Y4C2 921 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 TRAF6Q9Y4K3 522 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 PARP14Q460N5 1801 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 ZNF638Q14966 1978 aaKnown RBP12.72□□□□□ -0.37
LIG1-201ENST00000263274 RBM47A0AV96 593 aaKnown RBP12.72□□□□□ -0.37
LIG1-201ENST00000263274 C7orf72A4D263 438 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 STRNO43815 780 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 CLIC3O95833 236 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 PCSK6P29122 969 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 GJA5P36382 358 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 VPS26BQ4G0F5 336 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 ALKAL1Q6UXT8 129 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 TLK2Q86UE8 772 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 DLG3Q92796 817 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 NTAN1Q96AB6 310 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 SMARCD1Q96GM5 515 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 SLC9A7Q96T83 725 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 BRD8Q9H0E9 1235 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 TTC3P53804 2025 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 LRRC14BA6NHZ5 514 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 A8MT66 165 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 DENRO43583 198 aaKnown RBP12.72□□□□□ -0.37
LIG1-201ENST00000263274 NRP2O60462 931 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 IPO13O94829 963 aaKnown RBP12.72□□□□□ -0.37
LIG1-201ENST00000263274 OR4Q2P0C623 313 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 LHX1P48742 406 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 NSUN2Q08J23 767 aaKnown RBP eCLIP12.72□□□□□ -0.37
LIG1-201ENST00000263274 GRM2Q14416 872 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 MAPRE2Q15555 327 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 TBCELQ5QJ74 424 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 TSTD2Q5T7W7 516 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 METTL23Q86XA0 190 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 SPPL2CQ8IUH8 684 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 FAM110BQ8TC76 370 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 SPPL2BQ8TCT7 592 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 NT5C3BQ969T7 300 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 MAML3Q96JK9 1138 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 ZFRQ96KR1 1074 aaKnown RBP12.72□□□□□ -0.37
LIG1-201ENST00000263274 TMEM209Q96SK2 561 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 MID1IP1Q9NPA3 183 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 SPAG4Q9NPE6 437 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 MIOSQ9NXC5 875 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 KCTD3Q9Y597 815 aa12.72□□□□□ -0.37
LIG1-201ENST00000263274 PPP6CO00743 305 aa12.71□□□□□ -0.37
LIG1-201ENST00000263274 ANGPT2O15123 496 aa12.71□□□□□ -0.37
LIG1-201ENST00000263274 PSMD3O43242 534 aa12.71□□□□□ -0.37
LIG1-201ENST00000263274 ASLP04424 464 aa12.71□□□□□ -0.37
LIG1-201ENST00000263274 CHRM3P20309 590 aa12.71□□□□□ -0.37
LIG1-201ENST00000263274 CES1P23141 567 aa12.71□□□□□ -0.37
LIG1-201ENST00000263274 NR1H2P55055 460 aa12.71□□□□□ -0.37
LIG1-201ENST00000263274 ARPP19P56211 112 aa12.71□□□□□ -0.37
LIG1-201ENST00000263274 PFKFB4Q16877 469 aa12.71□□□□□ -0.37
LIG1-201ENST00000263274 PABPC1LQ4VXU2 614 aaKnown RBP12.71□□□□□ -0.37
LIG1-201ENST00000263274 TMEM151AQ8N4L1 468 aa12.71□□□□□ -0.37
LIG1-201ENST00000263274 PAF1Q8N7H5 531 aa12.71□□□□□ -0.37
LIG1-201ENST00000263274 C3orf58Q8NDZ4 430 aa12.71□□□□□ -0.37
LIG1-201ENST00000263274 KCTD13Q8WZ19 329 aa12.71□□□□□ -0.37
LIG1-201ENST00000263274 HAPLN3Q96S86 360 aa12.71□□□□□ -0.37
LIG1-201ENST00000263274 OSBPL2Q9H1P3 480 aa12.71□□□□□ -0.37
LIG1-201ENST00000263274 CACNA2D2Q9NY47 1150 aa12.71□□□□□ -0.37
LIG1-201ENST00000263274 CPA4Q9UI42 421 aa12.71□□□□□ -0.37
LIG1-201ENST00000263274 SIP14410 1827 aa12.71□□□□□ -0.37
LIG1-201ENST00000263274 FOXD2O60548 495 aaPredicted RBP12.71□□□□□ -0.38
LIG1-201ENST00000263274 LTA4HP09960 611 aaKnown RBP12.71□□□□□ -0.38
LIG1-201ENST00000263274 FUT4P22083 530 aa12.71□□□□□ -0.38
LIG1-201ENST00000263274 SH3BGRP55822 239 aaPredicted RBP12.71□□□□□ -0.38
LIG1-201ENST00000263274 UBXN11Q5T124 520 aa12.71□□□□□ -0.38
LIG1-201ENST00000263274 TTC33Q6PID6 262 aaPredicted RBP12.71□□□□□ -0.38
LIG1-201ENST00000263274 DCLRE1AQ6PJP8 1040 aa12.71□□□□□ -0.38
LIG1-201ENST00000263274 MIB1Q86YT6 1006 aa12.71□□□□□ -0.38
LIG1-201ENST00000263274 CLVS1Q8IUQ0 354 aaPredicted RBP12.71□□□□□ -0.38
LIG1-201ENST00000263274 DCBLD1Q8N8Z6 715 aa12.71□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms