RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 CT47B1P0C2W7 299 aaPredicted RBP20.16■□□□□ 0.82
CLN3-251ENST00000636853 LAS1LQ9Y4W2 734 aaKnown RBP20.16■□□□□ 0.82
CLN3-251ENST00000636853 PEAK1Q9H792 1746 aa20.16■□□□□ 0.82
CLN3-251ENST00000636853 HSP90AB2PQ58FF8 381 aa20.15■□□□□ 0.82
CLN3-251ENST00000636853 FMN2Q9NZ56 1722 aa20.15■□□□□ 0.82
CLN3-251ENST00000636853 ANKARQ7Z5J8 1434 aa20.15■□□□□ 0.82
CLN3-251ENST00000636853 CLUAP1Q96AJ1 413 aa20.15■□□□□ 0.82
CLN3-251ENST00000636853 AEBP1Q8IUX7 1158 aa20.14■□□□□ 0.81
CLN3-251ENST00000636853 SMC4Q9NTJ3 1288 aa20.14■□□□□ 0.81
CLN3-251ENST00000636853 DLG5Q8TDM6 1919 aa20.13■□□□□ 0.81
CLN3-251ENST00000636853 SULT6B1Q6IMI4 303 aa20.13■□□□□ 0.81
CLN3-251ENST00000636853 SSH1Q8WYL5 1049 aa20.13■□□□□ 0.81
CLN3-251ENST00000636853 MSH5O43196 834 aa20.12■□□□□ 0.81
CLN3-251ENST00000636853 PIK3C2AO00443 1686 aa20.12■□□□□ 0.81
CLN3-251ENST00000636853 MAP3K19Q56UN5 1328 aa20.12■□□□□ 0.81
CLN3-251ENST00000636853 MS4A1P11836 297 aa20.11■□□□□ 0.81
CLN3-251ENST00000636853 IGHDP01880 384 aa20.1■□□□□ 0.81
CLN3-251ENST00000636853 NUTM2GQ5VZR2 741 aa20.1■□□□□ 0.81
CLN3-251ENST00000636853 ZKSCAN2Q63HK3 967 aa20.1■□□□□ 0.81
CLN3-251ENST00000636853 FAM83GA6ND36 823 aa20.09■□□□□ 0.81
CLN3-251ENST00000636853 PDE4AP27815 886 aa20.09■□□□□ 0.81
CLN3-251ENST00000636853 NLRP6P59044 892 aa20.09■□□□□ 0.81
CLN3-251ENST00000636853 NPHP4O75161 1426 aaPredicted RBP20.08■□□□□ 0.81
CLN3-251ENST00000636853 PAK3O75914 559 aaPredicted RBP20.07■□□□□ 0.8
CLN3-251ENST00000636853 CALD1Q05682 793 aaKnown RBP20.07■□□□□ 0.8
CLN3-251ENST00000636853 DCTN1Q14203 1278 aa20.07■□□□□ 0.8
CLN3-251ENST00000636853 FTSJ3Q8IY81 847 aaKnown RBP20.07■□□□□ 0.8
CLN3-251ENST00000636853 DZIP1LQ8IYY4 767 aaKnown RBP20.07■□□□□ 0.8
CLN3-251ENST00000636853 LMOD3Q0VAK6 560 aa20.06■□□□□ 0.8
CLN3-251ENST00000636853 TRIM27P14373 513 aa20.06■□□□□ 0.8
CLN3-251ENST00000636853 GNAI1P63096 354 aa20.06■□□□□ 0.8
CLN3-251ENST00000636853 IFT57Q9NWB7 429 aa20.06■□□□□ 0.8
CLN3-251ENST00000636853 NOB1Q9ULX3 412 aaKnown RBP20.06■□□□□ 0.8
CLN3-251ENST00000636853 PHF8Q9UPP1 1060 aa20.06■□□□□ 0.8
CLN3-251ENST00000636853 RGPD1P0DJD0 1748 aa20.05■□□□□ 0.8
CLN3-251ENST00000636853 AMPHP49418 695 aa20.05■□□□□ 0.8
CLN3-251ENST00000636853 ABTB2Q8N961 1025 aa20.05■□□□□ 0.8
CLN3-251ENST00000636853 BACH2Q9BYV9 841 aa20.05■□□□□ 0.8
CLN3-251ENST00000636853 SBNO1A3KN83 1393 aa20.05■□□□□ 0.8
CLN3-251ENST00000636853 MVPQ14764 893 aaKnown RBP20.05■□□□□ 0.8
CLN3-251ENST00000636853 MBIPQ9NS73 344 aa20.05■□□□□ 0.8
CLN3-251ENST00000636853 FLT4P35916 1363 aa20.04■□□□□ 0.8
CLN3-251ENST00000636853 ZNF853P0CG23 659 aa20.04■□□□□ 0.8
CLN3-251ENST00000636853 PCDHB15Q9Y5E8 787 aa20.04■□□□□ 0.8
CLN3-251ENST00000636853 ATF7IPQ6VMQ6 1270 aa20.04■□□□□ 0.8
CLN3-251ENST00000636853 C14orf37Q86TY3 774 aa20.04■□□□□ 0.8
CLN3-251ENST00000636853 MARF1Q9Y4F3 1742 aaKnown RBP20.03■□□□□ 0.8
CLN3-251ENST00000636853 TSPYL6Q8N831 410 aa20.03■□□□□ 0.8
CLN3-251ENST00000636853 ADGRL3Q9HAR2 1447 aa20.03■□□□□ 0.8
CLN3-251ENST00000636853 RGS3P49796 1198 aa20.02■□□□□ 0.8
CLN3-251ENST00000636853 ELL2O00472 640 aaPredicted RBP20.02■□□□□ 0.8
CLN3-251ENST00000636853 ALDH1L2Q3SY69 923 aa20.02■□□□□ 0.8
CLN3-251ENST00000636853 CFAP44Q96MT7 982 aa20.02■□□□□ 0.8
CLN3-251ENST00000636853 VAMP4O75379 141 aa20.01■□□□□ 0.79
CLN3-251ENST00000636853 AAMPQ13685 434 aa20.01■□□□□ 0.79
CLN3-251ENST00000636853 ESCO1Q5FWF5 840 aa20.01■□□□□ 0.79
CLN3-251ENST00000636853 ARHGEF10O15013 1369 aa20■□□□□ 0.79
CLN3-251ENST00000636853 KIF16BQ96L93 1317 aa20■□□□□ 0.79
CLN3-251ENST00000636853 ITPRIPQ8IWB1 547 aa19.99■□□□□ 0.79
CLN3-251ENST00000636853 EYA1Q99502 592 aa19.99■□□□□ 0.79
CLN3-251ENST00000636853 ANP32AP39687 249 aaKnown RBP19.99■□□□□ 0.79
CLN3-251ENST00000636853 MCM10Q7L590 875 aa19.99■□□□□ 0.79
CLN3-251ENST00000636853 IPO8O15397 1037 aaKnown RBP19.98■□□□□ 0.79
CLN3-251ENST00000636853 TMEM57Q8N5G2 664 aa19.98■□□□□ 0.79
CLN3-251ENST00000636853 C8orf58Q8NAV2 365 aa19.98■□□□□ 0.79
CLN3-251ENST00000636853 ZNF428Q96B54 188 aa19.98■□□□□ 0.79
CLN3-251ENST00000636853 HOXC9P31274 260 aa19.97■□□□□ 0.79
CLN3-251ENST00000636853 PSME1Q06323 249 aa19.97■□□□□ 0.79
CLN3-251ENST00000636853 NPM2Q86SE8 214 aaKnown RBP19.97■□□□□ 0.79
CLN3-251ENST00000636853 TWISTNBQ3B726 338 aaPredicted RBP19.97■□□□□ 0.79
CLN3-251ENST00000636853 USP54Q70EL1 1684 aa19.97■□□□□ 0.79
CLN3-251ENST00000636853 FOXO3O43524 673 aa19.96■□□□□ 0.79
CLN3-251ENST00000636853 ERICH6Q7L0X2 663 aa19.96■□□□□ 0.79
CLN3-251ENST00000636853 IGSF1Q8N6C5 1336 aa19.96■□□□□ 0.79
CLN3-251ENST00000636853 MTHFSDQ2M296 383 aaKnown RBP19.95■□□□□ 0.78
CLN3-251ENST00000636853 MRPL50Q8N5N7 158 aaKnown RBP19.95■□□□□ 0.78
CLN3-251ENST00000636853 DDX19BQ9UMR2 479 aa19.95■□□□□ 0.78
CLN3-251ENST00000636853 BRPF1P55201 1214 aaPredicted RBP19.95■□□□□ 0.78
CLN3-251ENST00000636853 LTV1Q96GA3 475 aaPredicted RBP19.95■□□□□ 0.78
CLN3-251ENST00000636853 ORAI2Q96SN7 254 aa19.95■□□□□ 0.78
CLN3-251ENST00000636853 KDRP35968 1356 aa19.95■□□□□ 0.78
CLN3-251ENST00000636853 PROSER2Q86WR7 435 aaPredicted RBP19.93■□□□□ 0.78
CLN3-251ENST00000636853 NWD1Q149M9 1564 aa19.93■□□□□ 0.78
CLN3-251ENST00000636853 XPCQ01831 940 aaPredicted RBP19.92■□□□□ 0.78
CLN3-251ENST00000636853 RWDD1Q9H446 243 aaPredicted RBP19.92■□□□□ 0.78
CLN3-251ENST00000636853 KIF24Q5T7B8 1368 aa19.92■□□□□ 0.78
CLN3-251ENST00000636853 KRT24Q2M2I5 525 aa19.92■□□□□ 0.78
CLN3-251ENST00000636853 CHL1O00533 1208 aa19.91■□□□□ 0.78
CLN3-251ENST00000636853 FAM161AQ3B820 660 aa19.91■□□□□ 0.78
CLN3-251ENST00000636853 LTN1O94822 1766 aa19.91■□□□□ 0.78
CLN3-251ENST00000636853 C8orf34Q49A92 452 aa19.91■□□□□ 0.78
CLN3-251ENST00000636853 IPO9Q96P70 1041 aaKnown RBP19.9■□□□□ 0.78
CLN3-251ENST00000636853 CRB1P82279 1406 aa19.89■□□□□ 0.77
CLN3-251ENST00000636853 PLEKHG5O94827 1062 aa19.89■□□□□ 0.77
CLN3-251ENST00000636853 RTF1Q92541 710 aaKnown RBP19.89■□□□□ 0.77
CLN3-251ENST00000636853 ZBTB40Q9NUA8 1239 aa19.89■□□□□ 0.77
CLN3-251ENST00000636853 ZBTB7CA1YPR0 619 aa19.88■□□□□ 0.77
CLN3-251ENST00000636853 MIS18AQ9NYP9 233 aa19.88■□□□□ 0.77
CLN3-251ENST00000636853 PDZRN3Q9UPQ7 1066 aa19.88■□□□□ 0.77
CLN3-251ENST00000636853 ARHGAP45Q92619 1136 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms