RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 AAMPQ13685 434 aa28.47■■■□□ 2.15
PNKP-220ENST00000627232 FLT4P35916 1363 aa28.46■■■□□ 2.15
PNKP-220ENST00000627232 KIF24Q5T7B8 1368 aa28.46■■■□□ 2.15
PNKP-220ENST00000627232 CENPQQ7L2Z9 268 aaPredicted RBP28.46■■■□□ 2.15
PNKP-220ENST00000627232 PHF8Q9UPP1 1060 aa28.46■■■□□ 2.15
PNKP-220ENST00000627232 TCERG1O14776 1098 aaKnown RBP28.45■■■□□ 2.15
PNKP-220ENST00000627232 MAP3K19Q56UN5 1328 aa28.44■■■□□ 2.14
PNKP-220ENST00000627232 ARHGEF10O15013 1369 aa28.43■■■□□ 2.14
PNKP-220ENST00000627232 HSP90AB2PQ58FF8 381 aa28.42■■■□□ 2.14
PNKP-220ENST00000627232 FRAT1Q92837 279 aaPredicted RBP28.42■■■□□ 2.14
PNKP-220ENST00000627232 MS4A1P11836 297 aa28.41■■■□□ 2.14
PNKP-220ENST00000627232 NLRP6P59044 892 aa28.41■■■□□ 2.14
PNKP-220ENST00000627232 GNAI1P63096 354 aa28.4■■■□□ 2.14
PNKP-220ENST00000627232 ZNF428Q96B54 188 aa28.4■■■□□ 2.14
PNKP-220ENST00000627232 IFT57Q9NWB7 429 aa28.4■■■□□ 2.14
PNKP-220ENST00000627232 PANK1Q8TE04 598 aa28.39■■■□□ 2.14
PNKP-220ENST00000627232 SULT6B1Q6IMI4 303 aa28.38■■■□□ 2.13
PNKP-220ENST00000627232 ZKSCAN2Q63HK3 967 aa28.38■■■□□ 2.13
PNKP-220ENST00000627232 ZNF853P0CG23 659 aa28.37■■■□□ 2.13
PNKP-220ENST00000627232 AMPHP49418 695 aa28.36■■■□□ 2.13
PNKP-220ENST00000627232 ALDH1L2Q3SY69 923 aa28.36■■■□□ 2.13
PNKP-220ENST00000627232 BCL2L13Q9BXK5 485 aa28.36■■■□□ 2.13
PNKP-220ENST00000627232 COG6Q9Y2V7 657 aa28.36■■■□□ 2.13
PNKP-220ENST00000627232 AEBP1Q8IUX7 1158 aa28.35■■■□□ 2.13
PNKP-220ENST00000627232 ABTB2Q8N961 1025 aa28.35■■■□□ 2.13
PNKP-220ENST00000627232 CLUAP1Q96AJ1 413 aa28.35■■■□□ 2.13
PNKP-220ENST00000627232 SMC4Q9NTJ3 1288 aa28.35■■■□□ 2.13
PNKP-220ENST00000627232 SOX12O15370 315 aa28.34■■■□□ 2.13
PNKP-220ENST00000627232 KDRP35968 1356 aa28.34■■■□□ 2.13
PNKP-220ENST00000627232 SSH1Q8WYL5 1049 aa28.33■■■□□ 2.13
PNKP-220ENST00000627232 RTL1A6NKG5 1358 aa28.33■■■□□ 2.13
PNKP-220ENST00000627232 CFAP44Q96MT7 982 aa28.33■■■□□ 2.13
PNKP-220ENST00000627232 BRPF1P55201 1214 aaPredicted RBP28.32■■■□□ 2.12
PNKP-220ENST00000627232 C14orf37Q86TY3 774 aa28.32■■■□□ 2.12
PNKP-220ENST00000627232 RBM33Q96EV2 1170 aaKnown RBP28.32■■■□□ 2.12
PNKP-220ENST00000627232 KIF16BQ96L93 1317 aa28.31■■■□□ 2.12
PNKP-220ENST00000627232 RLBP1P12271 317 aa28.31■■■□□ 2.12
PNKP-220ENST00000627232 LTN1O94822 1766 aa28.3■■■□□ 2.12
PNKP-220ENST00000627232 IGSF1Q8N6C5 1336 aa28.3■■■□□ 2.12
PNKP-220ENST00000627232 KIF1AQ12756 1690 aa28.3■■■□□ 2.12
PNKP-220ENST00000627232 PAK3O75914 559 aaPredicted RBP28.3■■■□□ 2.12
PNKP-220ENST00000627232 ESCO1Q5FWF5 840 aa28.3■■■□□ 2.12
PNKP-220ENST00000627232 DZIP1LQ8IYY4 767 aaKnown RBP28.3■■■□□ 2.12
PNKP-220ENST00000627232 PROSER2Q86WR7 435 aaPredicted RBP28.29■■■□□ 2.12
PNKP-220ENST00000627232 THUMPD2Q9BTF0 503 aaKnown RBP28.29■■■□□ 2.12
PNKP-220ENST00000627232 LAS1LQ9Y4W2 734 aaKnown RBP28.29■■■□□ 2.12
PNKP-220ENST00000627232 HOXC9P31274 260 aa28.28■■■□□ 2.12
PNKP-220ENST00000627232 PSME1Q06323 249 aa28.28■■■□□ 2.12
PNKP-220ENST00000627232 MVPQ14764 893 aaKnown RBP28.28■■■□□ 2.12
PNKP-220ENST00000627232 TNNQ9UQP3 1299 aa28.28■■■□□ 2.12
PNKP-220ENST00000627232 PHRF1Q9P1Y6 1649 aaKnown RBP28.27■■■□□ 2.12
PNKP-220ENST00000627232 NFAT5O94916 1531 aa28.27■■■□□ 2.12
PNKP-220ENST00000627232 IPO8O15397 1037 aaKnown RBP28.27■■■□□ 2.12
PNKP-220ENST00000627232 MBIPQ9NS73 344 aa28.27■■■□□ 2.12
PNKP-220ENST00000627232 NUTM2GQ5VZR2 741 aa28.26■■■□□ 2.11
PNKP-220ENST00000627232 ATF7IPQ6VMQ6 1270 aa28.26■■■□□ 2.11
PNKP-220ENST00000627232 FTSJ3Q8IY81 847 aaKnown RBP28.26■■■□□ 2.11
PNKP-220ENST00000627232 NCOA3Q9Y6Q9 1424 aa28.25■■■□□ 2.11
PNKP-220ENST00000627232 VAMP4O75379 141 aa28.24■■■□□ 2.11
PNKP-220ENST00000627232 EYA1Q99502 592 aa28.24■■■□□ 2.11
PNKP-220ENST00000627232 FAM83GA6ND36 823 aa28.23■■■□□ 2.11
PNKP-220ENST00000627232 TRIM27P14373 513 aa28.23■■■□□ 2.11
PNKP-220ENST00000627232 TRPM3Q9HCF6 1732 aaPredicted RBP28.23■■■□□ 2.11
PNKP-220ENST00000627232 C19orf44Q9H6X5 657 aa28.23■■■□□ 2.11
PNKP-220ENST00000627232 NOB1Q9ULX3 412 aaKnown RBP28.23■■■□□ 2.11
PNKP-220ENST00000627232 KCNH5Q8NCM2 988 aa28.22■■■□□ 2.11
PNKP-220ENST00000627232 C1orf167Q5SNV9 1468 aa28.21■■■□□ 2.11
PNKP-220ENST00000627232 STRCP1A6NGW2 1772 aa28.2■■■□□ 2.11
PNKP-220ENST00000627232 SLIT3O75094 1523 aa28.2■■■□□ 2.1
PNKP-220ENST00000627232 DCCP43146 1447 aa28.19■■■□□ 2.1
PNKP-220ENST00000627232 IGHDP01880 384 aa28.19■■■□□ 2.1
PNKP-220ENST00000627232 GAS2L2Q8NHY3 880 aa28.19■■■□□ 2.1
PNKP-220ENST00000627232 DDX19BQ9UMR2 479 aa28.19■■■□□ 2.1
PNKP-220ENST00000627232 DCTN1Q14203 1278 aa28.18■■■□□ 2.1
PNKP-220ENST00000627232 IP6K1Q92551 441 aa28.18■■■□□ 2.1
PNKP-220ENST00000627232 ARHGAP45Q92619 1136 aa28.18■■■□□ 2.1
PNKP-220ENST00000627232 ORAI2Q96SN7 254 aa28.18■■■□□ 2.1
PNKP-220ENST00000627232 CHL1O00533 1208 aa28.18■■■□□ 2.1
PNKP-220ENST00000627232 PDE4AP27815 886 aa28.18■■■□□ 2.1
PNKP-220ENST00000627232 TWISTNBQ3B726 338 aaPredicted RBP28.18■■■□□ 2.1
PNKP-220ENST00000627232 HTATSF1O43719 755 aaKnown RBP28.17■■■□□ 2.1
PNKP-220ENST00000627232 HAP1P54257 671 aaPredicted RBP28.17■■■□□ 2.1
PNKP-220ENST00000627232 MRPL50Q8N5N7 158 aaKnown RBP28.17■■■□□ 2.1
PNKP-220ENST00000627232 BACH2Q9BYV9 841 aa28.17■■■□□ 2.1
PNKP-220ENST00000627232 CRB1P82279 1406 aa28.16■■■□□ 2.1
PNKP-220ENST00000627232 MST1RQ04912 1400 aa28.16■■■□□ 2.1
PNKP-220ENST00000627232 MTHFSDQ2M296 383 aaKnown RBP28.16■■■□□ 2.1
PNKP-220ENST00000627232 TSPYL6Q8N831 410 aa28.16■■■□□ 2.1
PNKP-220ENST00000627232 KIAA0232Q92628 1395 aa28.16■■■□□ 2.1
PNKP-220ENST00000627232 LRRC37A3O60309 1634 aa28.14■■■□□ 2.1
PNKP-220ENST00000627232 PCDHB15Q9Y5E8 787 aa28.14■■■□□ 2.1
PNKP-220ENST00000627232 C8orf58Q8NAV2 365 aa28.13■■■□□ 2.09
PNKP-220ENST00000627232 FOXO3O43524 673 aa28.13■■■□□ 2.09
PNKP-220ENST00000627232 MCM10Q7L590 875 aa28.13■■■□□ 2.09
PNKP-220ENST00000627232 RWDD1Q9H446 243 aaPredicted RBP28.13■■■□□ 2.09
PNKP-220ENST00000627232 TMEM94Q12767 1356 aa28.12■■■□□ 2.09
PNKP-220ENST00000627232 RTF1Q92541 710 aaKnown RBP28.12■■■□□ 2.09
PNKP-220ENST00000627232 USP19O94966 1318 aa28.11■■■□□ 2.09
PNKP-220ENST00000627232 SKAP1Q86WV1 359 aa28.11■■■□□ 2.09
PNKP-220ENST00000627232 ITPRIPQ8IWB1 547 aa28.11■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms