RNA–Protein interactions for RNA: ENST00000624887.1

PCDHB11-202, Transcript of protocadherin beta 11, humanhuman

TSL 2 BASIC

Gene PCDHB11, Length 1,973 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB11-202ENST00000624887 CALD1Q05682 793 aaKnown RBP25.34■■□□□ 1.65
PCDHB11-202ENST00000624887 ZKSCAN2Q63HK3 967 aa25.34■■□□□ 1.65
PCDHB11-202ENST00000624887 PMFBP1Q8TBY8 1022 aa25.34■■□□□ 1.65
PCDHB11-202ENST00000624887 TNNQ9UQP3 1299 aa25.34■■□□□ 1.65
PCDHB11-202ENST00000624887 SMC4Q9NTJ3 1288 aa25.33■■□□□ 1.64
PCDHB11-202ENST00000624887 CHD2O14647 1828 aaKnown RBP25.32■■□□□ 1.64
PCDHB11-202ENST00000624887 SSH1Q8WYL5 1049 aa25.32■■□□□ 1.64
PCDHB11-202ENST00000624887 KDM4FA0A1W2PPD8 638 aa25.31■■□□□ 1.64
PCDHB11-202ENST00000624887 IGHDP01880 384 aa25.31■■□□□ 1.64
PCDHB11-202ENST00000624887 ANP32AP39687 249 aaKnown RBP25.31■■□□□ 1.64
PCDHB11-202ENST00000624887 EIF4A2Q14240 407 aaKnown RBP25.31■■□□□ 1.64
PCDHB11-202ENST00000624887 NGDNQ8NEJ9 315 aaKnown RBP25.31■■□□□ 1.64
PCDHB11-202ENST00000624887 PEAK1Q9H792 1746 aa25.31■■□□□ 1.64
PCDHB11-202ENST00000624887 DLG5Q8TDM6 1919 aa25.3■■□□□ 1.64
PCDHB11-202ENST00000624887 FMN2Q9NZ56 1722 aa25.3■■□□□ 1.64
PCDHB11-202ENST00000624887 LMOD3Q0VAK6 560 aa25.29■■□□□ 1.64
PCDHB11-202ENST00000624887 DZIP1LQ8IYY4 767 aaKnown RBP25.29■■□□□ 1.64
PCDHB11-202ENST00000624887 MVPQ14764 893 aaKnown RBP25.28■■□□□ 1.64
PCDHB11-202ENST00000624887 ZNF428Q96B54 188 aa25.27■■□□□ 1.64
PCDHB11-202ENST00000624887 IFT57Q9NWB7 429 aa25.27■■□□□ 1.64
PCDHB11-202ENST00000624887 ALDH1L2Q3SY69 923 aa25.27■■□□□ 1.64
PCDHB11-202ENST00000624887 RGPD1P0DJD0 1748 aa25.27■■□□□ 1.64
PCDHB11-202ENST00000624887 GNAI1P63096 354 aa25.26■■□□□ 1.63
PCDHB11-202ENST00000624887 FTSJ3Q8IY81 847 aaKnown RBP25.26■■□□□ 1.63
PCDHB11-202ENST00000624887 PIK3C2AO00443 1686 aa25.26■■□□□ 1.63
PCDHB11-202ENST00000624887 ZNF853P0CG23 659 aa25.25■■□□□ 1.63
PCDHB11-202ENST00000624887 THUMPD2Q9BTF0 503 aaKnown RBP25.25■■□□□ 1.63
PCDHB11-202ENST00000624887 TRIM27P14373 513 aa25.25■■□□□ 1.63
PCDHB11-202ENST00000624887 ATF7IPQ6VMQ6 1270 aa25.25■■□□□ 1.63
PCDHB11-202ENST00000624887 HSP90AB2PQ58FF8 381 aa25.24■■□□□ 1.63
PCDHB11-202ENST00000624887 LAS1LQ9Y4W2 734 aaKnown RBP25.24■■□□□ 1.63
PCDHB11-202ENST00000624887 KIF16BQ96L93 1317 aa25.24■■□□□ 1.63
PCDHB11-202ENST00000624887 SULT6B1Q6IMI4 303 aa25.24■■□□□ 1.63
PCDHB11-202ENST00000624887 PCDHB15Q9Y5E8 787 aa25.24■■□□□ 1.63
PCDHB11-202ENST00000624887 IPO9Q96P70 1041 aaKnown RBP25.23■■□□□ 1.63
PCDHB11-202ENST00000624887 NOB1Q9ULX3 412 aaKnown RBP25.23■■□□□ 1.63
PCDHB11-202ENST00000624887 MAP3K19Q56UN5 1328 aa25.23■■□□□ 1.63
PCDHB11-202ENST00000624887 BRPF1P55201 1214 aaPredicted RBP25.22■■□□□ 1.63
PCDHB11-202ENST00000624887 AEBP1Q8IUX7 1158 aa25.22■■□□□ 1.63
PCDHB11-202ENST00000624887 SBNO1A3KN83 1393 aa25.21■■□□□ 1.63
PCDHB11-202ENST00000624887 IPO8O15397 1037 aaKnown RBP25.21■■□□□ 1.63
PCDHB11-202ENST00000624887 CFAP44Q96MT7 982 aa25.21■■□□□ 1.63
PCDHB11-202ENST00000624887 ERICH6Q7L0X2 663 aa25.2■■□□□ 1.63
PCDHB11-202ENST00000624887 FLT4P35916 1363 aa25.2■■□□□ 1.62
PCDHB11-202ENST00000624887 MBIPQ9NS73 344 aa25.2■■□□□ 1.62
PCDHB11-202ENST00000624887 USP54Q70EL1 1684 aa25.19■■□□□ 1.62
PCDHB11-202ENST00000624887 SOX12O15370 315 aa25.19■■□□□ 1.62
PCDHB11-202ENST00000624887 RGS3P49796 1198 aa25.19■■□□□ 1.62
PCDHB11-202ENST00000624887 NWD1Q149M9 1564 aa25.18■■□□□ 1.62
PCDHB11-202ENST00000624887 ARHGEF10O15013 1369 aa25.18■■□□□ 1.62
PCDHB11-202ENST00000624887 VAMP4O75379 141 aa25.18■■□□□ 1.62
PCDHB11-202ENST00000624887 FAM161AQ3B820 660 aa25.18■■□□□ 1.62
PCDHB11-202ENST00000624887 DDX19BQ9UMR2 479 aa25.18■■□□□ 1.62
PCDHB11-202ENST00000624887 FAM83GA6ND36 823 aa25.17■■□□□ 1.62
PCDHB11-202ENST00000624887 MARF1Q9Y4F3 1742 aaKnown RBP25.17■■□□□ 1.62
PCDHB11-202ENST00000624887 HSPA2P54652 639 aa25.16■■□□□ 1.62
PCDHB11-202ENST00000624887 RWDD1Q9H446 243 aaPredicted RBP25.16■■□□□ 1.62
PCDHB11-202ENST00000624887 NOP58Q9Y2X3 529 aaKnown RBP25.16■■□□□ 1.62
PCDHB11-202ENST00000624887 NLRP6P59044 892 aa25.16■■□□□ 1.62
PCDHB11-202ENST00000624887 C8orf34Q49A92 452 aa25.15■■□□□ 1.62
PCDHB11-202ENST00000624887 ADGRL3Q9HAR2 1447 aa25.15■■□□□ 1.62
PCDHB11-202ENST00000624887 TSPYL6Q8N831 410 aa25.14■■□□□ 1.62
PCDHB11-202ENST00000624887 RBM33Q96EV2 1170 aaKnown RBP25.14■■□□□ 1.62
PCDHB11-202ENST00000624887 ITPRIPQ8IWB1 547 aa25.14■■□□□ 1.61
PCDHB11-202ENST00000624887 KIF24Q5T7B8 1368 aa25.14■■□□□ 1.61
PCDHB11-202ENST00000624887 AMPHP49418 695 aa25.13■■□□□ 1.61
PCDHB11-202ENST00000624887 NPM2Q86SE8 214 aaKnown RBP25.13■■□□□ 1.61
PCDHB11-202ENST00000624887 LMTK3Q96Q04 1460 aa25.13■■□□□ 1.61
PCDHB11-202ENST00000624887 DCTN1Q14203 1278 aa25.13■■□□□ 1.61
PCDHB11-202ENST00000624887 TMEM57Q8N5G2 664 aa25.13■■□□□ 1.61
PCDHB11-202ENST00000624887 MRPL50Q8N5N7 158 aaKnown RBP25.12■■□□□ 1.61
PCDHB11-202ENST00000624887 PHF8Q9UPP1 1060 aa25.12■■□□□ 1.61
PCDHB11-202ENST00000624887 KDRP35968 1356 aa25.12■■□□□ 1.61
PCDHB11-202ENST00000624887 TWISTNBQ3B726 338 aaPredicted RBP25.11■■□□□ 1.61
PCDHB11-202ENST00000624887 ARHGAP45Q92619 1136 aa25.11■■□□□ 1.61
PCDHB11-202ENST00000624887 IGSF1Q8N6C5 1336 aa25.1■■□□□ 1.61
PCDHB11-202ENST00000624887 ABTB2Q8N961 1025 aa25.09■■□□□ 1.61
PCDHB11-202ENST00000624887 BCL11AQ9H165 835 aa25.09■■□□□ 1.61
PCDHB11-202ENST00000624887 C8orf58Q8NAV2 365 aa25.09■■□□□ 1.61
PCDHB11-202ENST00000624887 ZBTB47Q9UFB7 747 aaPredicted RBP25.09■■□□□ 1.61
PCDHB11-202ENST00000624887 PROSER2Q86WR7 435 aaPredicted RBP25.08■■□□□ 1.61
PCDHB11-202ENST00000624887 ZBTB40Q9NUA8 1239 aa25.08■■□□□ 1.61
PCDHB11-202ENST00000624887 HDAC1Q13547 482 aaPredicted RBP25.07■■□□□ 1.6
PCDHB11-202ENST00000624887 C14orf37Q86TY3 774 aa25.07■■□□□ 1.6
PCDHB11-202ENST00000624887 ELL2O00472 640 aaPredicted RBP25.07■■□□□ 1.6
PCDHB11-202ENST00000624887 PAK3O75914 559 aaPredicted RBP25.07■■□□□ 1.6
PCDHB11-202ENST00000624887 EYA1Q99502 592 aa25.07■■□□□ 1.6
PCDHB11-202ENST00000624887 CHL1O00533 1208 aa25.06■■□□□ 1.6
PCDHB11-202ENST00000624887 NUTM2GQ5VZR2 741 aa25.06■■□□□ 1.6
PCDHB11-202ENST00000624887 VIRMAQ69YN4 1812 aaKnown RBP25.06■■□□□ 1.6
PCDHB11-202ENST00000624887 HOXC9P31274 260 aa25.05■■□□□ 1.6
PCDHB11-202ENST00000624887 PDZRN3Q9UPQ7 1066 aa25.05■■□□□ 1.6
PCDHB11-202ENST00000624887 MCM10Q7L590 875 aa25.05■■□□□ 1.6
PCDHB11-202ENST00000624887 MTHFSDQ2M296 383 aaKnown RBP25.03■■□□□ 1.6
PCDHB11-202ENST00000624887 CRB1P82279 1406 aa25.03■■□□□ 1.6
PCDHB11-202ENST00000624887 HAP1P54257 671 aaPredicted RBP25.02■■□□□ 1.6
PCDHB11-202ENST00000624887 RTL1A6NKG5 1358 aa25.02■■□□□ 1.6
PCDHB11-202ENST00000624887 KIAA0232Q92628 1395 aa25.02■■□□□ 1.6
PCDHB11-202ENST00000624887 ABCC4O15439 1325 aa25.01■■□□□ 1.59
PCDHB11-202ENST00000624887 ESCO1Q5FWF5 840 aa25■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms