RNA–Protein interactions for RNA: ENST00000623007.3

LDB3-208, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,664 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-208ENST00000623007 CRBNQ96SW2 442 aa21.11■□□□□ 0.97
LDB3-208ENST00000623007 C19orf44Q9H6X5 657 aa21.11■□□□□ 0.97
LDB3-208ENST00000623007 FANCIQ9NVI1 1328 aa21.1■□□□□ 0.97
LDB3-208ENST00000623007 PLIN1O60240 522 aa21.1■□□□□ 0.97
LDB3-208ENST00000623007 PROSER2Q86WR7 435 aaPredicted RBP21.1■□□□□ 0.97
LDB3-208ENST00000623007 ABTB2Q8N961 1025 aa21.1■□□□□ 0.97
LDB3-208ENST00000623007 KCNH5Q8NCM2 988 aa21.1■□□□□ 0.97
LDB3-208ENST00000623007 FBLN1P23142 703 aa21.09■□□□□ 0.97
LDB3-208ENST00000623007 HAP1P54257 671 aaPredicted RBP21.09■□□□□ 0.97
LDB3-208ENST00000623007 GNAI1P63096 354 aa21.09■□□□□ 0.97
LDB3-208ENST00000623007 MAP3K19Q56UN5 1328 aa21.09■□□□□ 0.97
LDB3-208ENST00000623007 PEAK1Q9H792 1746 aa21.09■□□□□ 0.97
LDB3-208ENST00000623007 AMPHP49418 695 aa21.09■□□□□ 0.97
LDB3-208ENST00000623007 IFT57Q9NWB7 429 aa21.09■□□□□ 0.97
LDB3-208ENST00000623007 HMOX1P09601 288 aa21.08■□□□□ 0.96
LDB3-208ENST00000623007 PSME1Q06323 249 aa21.08■□□□□ 0.96
LDB3-208ENST00000623007 ESCO1Q5FWF5 840 aa21.06■□□□□ 0.96
LDB3-208ENST00000623007 KDRP35968 1356 aa21.06■□□□□ 0.96
LDB3-208ENST00000623007 ALDH1L2Q3SY69 923 aa21.05■□□□□ 0.96
LDB3-208ENST00000623007 MARF1Q9Y4F3 1742 aaKnown RBP21.05■□□□□ 0.96
LDB3-208ENST00000623007 BCAR3O75815 825 aa21.05■□□□□ 0.96
LDB3-208ENST00000623007 PHRF1Q9P1Y6 1649 aaKnown RBP21.04■□□□□ 0.96
LDB3-208ENST00000623007 PAK3O75914 559 aaPredicted RBP21.04■□□□□ 0.96
LDB3-208ENST00000623007 SULT6B1Q6IMI4 303 aa21.04■□□□□ 0.96
LDB3-208ENST00000623007 MST1RQ04912 1400 aa21.04■□□□□ 0.96
LDB3-208ENST00000623007 CENPQQ7L2Z9 268 aaPredicted RBP21.03■□□□□ 0.96
LDB3-208ENST00000623007 PHACTR3Q96KR7 559 aa21.03■□□□□ 0.96
LDB3-208ENST00000623007 KIF16BQ96L93 1317 aa21.03■□□□□ 0.96
LDB3-208ENST00000623007 IPO8O15397 1037 aaKnown RBP21.02■□□□□ 0.96
LDB3-208ENST00000623007 HSP90AB2PQ58FF8 381 aa21.02■□□□□ 0.96
LDB3-208ENST00000623007 IGSF1Q8N6C5 1336 aa21.02■□□□□ 0.96
LDB3-208ENST00000623007 BRPF1P55201 1214 aaPredicted RBP21.02■□□□□ 0.95
LDB3-208ENST00000623007 CFAP44Q96MT7 982 aa21.02■□□□□ 0.95
LDB3-208ENST00000623007 ATF3P18847 181 aa21.01■□□□□ 0.95
LDB3-208ENST00000623007 ZKSCAN2Q63HK3 967 aa21.01■□□□□ 0.95
LDB3-208ENST00000623007 DLG5Q8TDM6 1919 aa21.01■□□□□ 0.95
LDB3-208ENST00000623007 C1orf167Q5SNV9 1468 aa21■□□□□ 0.95
LDB3-208ENST00000623007 EXOSC9Q06265 439 aaKnown RBP21■□□□□ 0.95
LDB3-208ENST00000623007 C20orf194Q5TEA3 1177 aa21■□□□□ 0.95
LDB3-208ENST00000623007 GAS2L2Q8NHY3 880 aa21■□□□□ 0.95
LDB3-208ENST00000623007 TCERG1O14776 1098 aaKnown RBP20.99■□□□□ 0.95
LDB3-208ENST00000623007 HTATSF1O43719 755 aaKnown RBP20.99■□□□□ 0.95
LDB3-208ENST00000623007 ZNF853P0CG23 659 aa20.99■□□□□ 0.95
LDB3-208ENST00000623007 HOXC9P31274 260 aa20.99■□□□□ 0.95
LDB3-208ENST00000623007 CADPS2Q86UW7 1296 aa20.99■□□□□ 0.95
LDB3-208ENST00000623007 TSR2Q969E8 191 aaKnown RBP20.98■□□□□ 0.95
LDB3-208ENST00000623007 CHMP4BQ9H444 224 aaKnown RBP20.98■□□□□ 0.95
LDB3-208ENST00000623007 SLIT3O75094 1523 aa20.97■□□□□ 0.95
LDB3-208ENST00000623007 NFAT5O94916 1531 aa20.97■□□□□ 0.95
LDB3-208ENST00000623007 LTN1O94822 1766 aa20.96■□□□□ 0.95
LDB3-208ENST00000623007 IP6K1Q92551 441 aa20.96■□□□□ 0.95
LDB3-208ENST00000623007 FRAT1Q92837 279 aaPredicted RBP20.96■□□□□ 0.95
LDB3-208ENST00000623007 SMC4Q9NTJ3 1288 aa20.96■□□□□ 0.95
LDB3-208ENST00000623007 TMEM94Q12767 1356 aa20.96■□□□□ 0.95
LDB3-208ENST00000623007 MSH6P52701 1360 aa20.95■□□□□ 0.94
LDB3-208ENST00000623007 TRPM3Q9HCF6 1732 aaPredicted RBP20.95■□□□□ 0.94
LDB3-208ENST00000623007 SOX12O15370 315 aa20.94■□□□□ 0.94
LDB3-208ENST00000623007 FTSJ3Q8IY81 847 aaKnown RBP20.94■□□□□ 0.94
LDB3-208ENST00000623007 RTF1Q92541 710 aaKnown RBP20.94■□□□□ 0.94
LDB3-208ENST00000623007 CLUAP1Q96AJ1 413 aa20.94■□□□□ 0.94
LDB3-208ENST00000623007 KDM2BQ8NHM5 1336 aa20.93■□□□□ 0.94
LDB3-208ENST00000623007 DZIP1LQ8IYY4 767 aaKnown RBP20.93■□□□□ 0.94
LDB3-208ENST00000623007 ARHGAP45Q92619 1136 aa20.93■□□□□ 0.94
LDB3-208ENST00000623007 ILDR1Q86SU0 546 aaPredicted RBP20.93■□□□□ 0.94
LDB3-208ENST00000623007 EYA1Q99502 592 aa20.93■□□□□ 0.94
LDB3-208ENST00000623007 RBM19Q9Y4C8 960 aaKnown RBP20.93■□□□□ 0.94
LDB3-208ENST00000623007 LMTK3Q96Q04 1460 aa20.92■□□□□ 0.94
LDB3-208ENST00000623007 USP19O94966 1318 aa20.92■□□□□ 0.94
LDB3-208ENST00000623007 AEBP1Q8IUX7 1158 aa20.92■□□□□ 0.94
LDB3-208ENST00000623007 KIAA0232Q92628 1395 aa20.91■□□□□ 0.94
LDB3-208ENST00000623007 ATF7IPQ6VMQ6 1270 aa20.91■□□□□ 0.94
LDB3-208ENST00000623007 KRT28Q7Z3Y7 464 aa20.91■□□□□ 0.94
LDB3-208ENST00000623007 BABAM1Q9NWV8 329 aa20.91■□□□□ 0.94
LDB3-208ENST00000623007 NPHP3Q7Z494 1330 aa20.9■□□□□ 0.94
LDB3-208ENST00000623007 FOXO3O43524 673 aa20.9■□□□□ 0.94
LDB3-208ENST00000623007 MVPQ14764 893 aaKnown RBP20.9■□□□□ 0.94
LDB3-208ENST00000623007 SSH1Q8WYL5 1049 aa20.9■□□□□ 0.94
LDB3-208ENST00000623007 RBM33Q96EV2 1170 aaKnown RBP20.9■□□□□ 0.94
LDB3-208ENST00000623007 ORAI2Q96SN7 254 aa20.9■□□□□ 0.94
LDB3-208ENST00000623007 DDX19BQ9UMR2 479 aa20.9■□□□□ 0.94
LDB3-208ENST00000623007 LAS1LQ9Y4W2 734 aaKnown RBP20.9■□□□□ 0.94
LDB3-208ENST00000623007 SOS1Q07889 1333 aaPredicted RBP20.9■□□□□ 0.94
LDB3-208ENST00000623007 MBIPQ9NS73 344 aa20.89■□□□□ 0.94
LDB3-208ENST00000623007 STRCP1A6NGW2 1772 aa20.89■□□□□ 0.94
LDB3-208ENST00000623007 ABCC6O95255 1503 aa20.88■□□□□ 0.93
LDB3-208ENST00000623007 NUTM2GQ5VZR2 741 aa20.88■□□□□ 0.93
LDB3-208ENST00000623007 COG6Q9Y2V7 657 aa20.88■□□□□ 0.93
LDB3-208ENST00000623007 ALS2Q96Q42 1657 aa20.88■□□□□ 0.93
LDB3-208ENST00000623007 CHL1O00533 1208 aa20.87■□□□□ 0.93
LDB3-208ENST00000623007 VAMP4O75379 141 aa20.87■□□□□ 0.93
LDB3-208ENST00000623007 GCP02774 474 aa20.87■□□□□ 0.93
LDB3-208ENST00000623007 PANK1Q8TE04 598 aa20.87■□□□□ 0.93
LDB3-208ENST00000623007 PLEKHG2Q9H7P9 1386 aa20.86■□□□□ 0.93
LDB3-208ENST00000623007 TWISTNBQ3B726 338 aaPredicted RBP20.86■□□□□ 0.93
LDB3-208ENST00000623007 ARHGEF25Q86VW2 580 aa20.86■□□□□ 0.93
LDB3-208ENST00000623007 CHMP4AQ9BY43 222 aa20.86■□□□□ 0.93
LDB3-208ENST00000623007 BCL2L13Q9BXK5 485 aa20.85■□□□□ 0.93
LDB3-208ENST00000623007 STRCQ7RTU9 1775 aa20.84■□□□□ 0.93
LDB3-208ENST00000623007 GNAT3A8MTJ3 354 aa20.84■□□□□ 0.93
LDB3-208ENST00000623007 TRIM27P14373 513 aa20.84■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms