RNA–Protein interactions for RNA: ENST00000621856.1

SPAST-204, Transcript of spastin, humanhuman

TSL 1 (best) BASIC

Gene SPAST, Length 1,715 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPAST-204ENST00000621856 RRP1P56182 461 aaKnown RBP28.06■■■□□ 2.08
SPAST-204ENST00000621856 HSP90AB2PQ58FF8 381 aa28.06■■■□□ 2.08
SPAST-204ENST00000621856 CADPS2Q86UW7 1296 aa28.06■■■□□ 2.08
SPAST-204ENST00000621856 XPCQ01831 940 aaPredicted RBP28.05■■■□□ 2.08
SPAST-204ENST00000621856 ZNF335Q9H4Z2 1342 aaPredicted RBP28.03■■■□□ 2.08
SPAST-204ENST00000621856 RIPK4P57078 832 aa28.03■■■□□ 2.08
SPAST-204ENST00000621856 KRT28Q7Z3Y7 464 aa28.03■■■□□ 2.08
SPAST-204ENST00000621856 TRPM3Q9HCF6 1732 aaPredicted RBP28.03■■■□□ 2.08
SPAST-204ENST00000621856 KIF24Q5T7B8 1368 aa28■■■□□ 2.07
SPAST-204ENST00000621856 RGPD1P0DJD0 1748 aa27.99■■■□□ 2.07
SPAST-204ENST00000621856 TRIM35Q9UPQ4 493 aa27.99■■■□□ 2.07
SPAST-204ENST00000621856 LTN1O94822 1766 aa27.99■■■□□ 2.07
SPAST-204ENST00000621856 NFE2L2Q16236 605 aa27.98■■■□□ 2.07
SPAST-204ENST00000621856 PHACTR3Q96KR7 559 aa27.98■■■□□ 2.07
SPAST-204ENST00000621856 SULT6B1Q6IMI4 303 aa27.98■■■□□ 2.07
SPAST-204ENST00000621856 LMOD2Q6P5Q4 547 aa27.98■■■□□ 2.07
SPAST-204ENST00000621856 KCNH5Q8NCM2 988 aa27.97■■■□□ 2.07
SPAST-204ENST00000621856 PPP4R2Q9NY27 417 aa27.97■■■□□ 2.07
SPAST-204ENST00000621856 NFAT5O94916 1531 aa27.96■■■□□ 2.07
SPAST-204ENST00000621856 HOXC9P31274 260 aa27.96■■■□□ 2.07
SPAST-204ENST00000621856 MYH16Q9H6N6 1097 aa27.96■■■□□ 2.07
SPAST-204ENST00000621856 ARHGEF10O15013 1369 aa27.95■■■□□ 2.06
SPAST-204ENST00000621856 AEBP1Q8IUX7 1158 aa27.95■■■□□ 2.06
SPAST-204ENST00000621856 RTL1A6NKG5 1358 aa27.94■■■□□ 2.06
SPAST-204ENST00000621856 SLIT3O75094 1523 aa27.92■■■□□ 2.06
SPAST-204ENST00000621856 IL16Q14005 1332 aa27.92■■■□□ 2.06
SPAST-204ENST00000621856 ALS2Q96Q42 1657 aa27.91■■■□□ 2.06
SPAST-204ENST00000621856 NPHP3Q7Z494 1330 aa27.91■■■□□ 2.06
SPAST-204ENST00000621856 DLG5Q8TDM6 1919 aa27.9■■■□□ 2.06
SPAST-204ENST00000621856 PLEKHG5O94827 1062 aa27.9■■■□□ 2.06
SPAST-204ENST00000621856 ZBTB7CA1YPR0 619 aa27.89■■■□□ 2.06
SPAST-204ENST00000621856 PLIN1O60240 522 aa27.89■■■□□ 2.06
SPAST-204ENST00000621856 PELP1Q8IZL8 1130 aaKnown RBP27.89■■■□□ 2.05
SPAST-204ENST00000621856 DDX17Q92841 729 aaKnown RBP27.89■■■□□ 2.05
SPAST-204ENST00000621856 USP19O94966 1318 aa27.88■■■□□ 2.05
SPAST-204ENST00000621856 LMOD3Q0VAK6 560 aa27.88■■■□□ 2.05
SPAST-204ENST00000621856 GCP02774 474 aa27.87■■■□□ 2.05
SPAST-204ENST00000621856 GOLGA6L2Q8N9W4 650 aaPredicted RBP27.87■■■□□ 2.05
SPAST-204ENST00000621856 IP6K1Q92551 441 aa27.87■■■□□ 2.05
SPAST-204ENST00000621856 EYA1Q99502 592 aa27.87■■■□□ 2.05
SPAST-204ENST00000621856 IGSF1Q8N6C5 1336 aa27.87■■■□□ 2.05
SPAST-204ENST00000621856 LTV1Q96GA3 475 aaPredicted RBP27.87■■■□□ 2.05
SPAST-204ENST00000621856 PHRF1Q9P1Y6 1649 aaKnown RBP27.86■■■□□ 2.05
SPAST-204ENST00000621856 FANCIQ9NVI1 1328 aa27.85■■■□□ 2.05
SPAST-204ENST00000621856 CALD1Q05682 793 aaKnown RBP27.85■■■□□ 2.05
SPAST-204ENST00000621856 TSR2Q969E8 191 aaKnown RBP27.84■■■□□ 2.05
SPAST-204ENST00000621856 KDRP35968 1356 aa27.83■■■□□ 2.05
SPAST-204ENST00000621856 BRINP3Q76B58 766 aa27.83■■■□□ 2.05
SPAST-204ENST00000621856 PXDNQ92626 1479 aa27.82■■■□□ 2.04
SPAST-204ENST00000621856 TNS3Q68CZ2 1445 aa27.82■■■□□ 2.04
SPAST-204ENST00000621856 SLAIN2Q9P270 581 aa27.81■■■□□ 2.04
SPAST-204ENST00000621856 ARHGEF25Q86VW2 580 aa27.81■■■□□ 2.04
SPAST-204ENST00000621856 EXOC6Q8TAG9 804 aa27.81■■■□□ 2.04
SPAST-204ENST00000621856 BCAR3O75815 825 aa27.8■■■□□ 2.04
SPAST-204ENST00000621856 B4GALNT3Q6L9W6 998 aa27.8■■■□□ 2.04
SPAST-204ENST00000621856 THUMPD2Q9BTF0 503 aaKnown RBP27.8■■■□□ 2.04
SPAST-204ENST00000621856 MED1Q15648 1581 aaPredicted RBP27.79■■■□□ 2.04
SPAST-204ENST00000621856 LAS1LQ9Y4W2 734 aaKnown RBP27.79■■■□□ 2.04
SPAST-204ENST00000621856 EXOSC9Q06265 439 aaKnown RBP27.78■■■□□ 2.04
SPAST-204ENST00000621856 CT47B1P0C2W7 299 aaPredicted RBP27.76■■■□□ 2.03
SPAST-204ENST00000621856 RARSP54136 660 aaKnown RBP27.76■■■□□ 2.03
SPAST-204ENST00000621856 SPATA31A3Q5VYP0 1347 aa27.76■■■□□ 2.03
SPAST-204ENST00000621856 CRBNQ96SW2 442 aa27.75■■■□□ 2.03
SPAST-204ENST00000621856 FAM83GA6ND36 823 aa27.75■■■□□ 2.03
SPAST-204ENST00000621856 GNAI1P63096 354 aa27.75■■■□□ 2.03
SPAST-204ENST00000621856 IFT57Q9NWB7 429 aa27.75■■■□□ 2.03
SPAST-204ENST00000621856 C20orf194Q5TEA3 1177 aa27.74■■■□□ 2.03
SPAST-204ENST00000621856 CCDC136Q96JN2 1154 aa27.74■■■□□ 2.03
SPAST-204ENST00000621856 DCTN1Q14203 1278 aa27.73■■■□□ 2.03
SPAST-204ENST00000621856 CANXP27824 592 aaKnown RBP27.72■■■□□ 2.03
SPAST-204ENST00000621856 ZC3H6P61129 1189 aaKnown RBP27.72■■■□□ 2.03
SPAST-204ENST00000621856 MTHFSDQ2M296 383 aaKnown RBP27.72■■■□□ 2.03
SPAST-204ENST00000621856 USHBP1Q8N6Y0 703 aa27.72■■■□□ 2.03
SPAST-204ENST00000621856 GAS2L2Q8NHY3 880 aa27.72■■■□□ 2.03
SPAST-204ENST00000621856 RGPD2P0DJD1 1756 aa27.72■■■□□ 2.03
SPAST-204ENST00000621856 NBPF6Q5VWK0 638 aa27.7■■■□□ 2.02
SPAST-204ENST00000621856 NBPF4Q96M43 638 aa27.7■■■□□ 2.02
SPAST-204ENST00000621856 ZNF853P0CG23 659 aa27.69■■■□□ 2.02
SPAST-204ENST00000621856 ANKRD24Q8TF21 1146 aa27.69■■■□□ 2.02
SPAST-204ENST00000621856 RGPD5Q99666 1765 aa27.68■■■□□ 2.02
SPAST-204ENST00000621856 CRYBG1Q9Y4K1 1723 aa27.68■■■□□ 2.02
SPAST-204ENST00000621856 CABLES1Q8TDN4 633 aa27.68■■■□□ 2.02
SPAST-204ENST00000621856 CFAP44Q96MT7 982 aa27.68■■■□□ 2.02
SPAST-204ENST00000621856 SOS2Q07890 1332 aaPredicted RBP27.67■■■□□ 2.02
SPAST-204ENST00000621856 MCM10Q7L590 875 aa27.67■■■□□ 2.02
SPAST-204ENST00000621856 RTF1Q92541 710 aaKnown RBP27.67■■■□□ 2.02
SPAST-204ENST00000621856 FRAT1Q92837 279 aaPredicted RBP27.67■■■□□ 2.02
SPAST-204ENST00000621856 BCL2L13Q9BXK5 485 aa27.67■■■□□ 2.02
SPAST-204ENST00000621856 LRRC59Q96AG4 307 aaKnown RBP27.67■■■□□ 2.02
SPAST-204ENST00000621856 MBIPQ9NS73 344 aa27.67■■■□□ 2.02
SPAST-204ENST00000621856 AXIN2Q9Y2T1 843 aa27.64■■■□□ 2.02
SPAST-204ENST00000621856 NHSL1Q5SYE7 1610 aa27.64■■■□□ 2.02
SPAST-204ENST00000621856 SMC4Q9NTJ3 1288 aa27.64■■■□□ 2.01
SPAST-204ENST00000621856 PDE3AQ14432 1141 aa27.63■■■□□ 2.01
SPAST-204ENST00000621856 CAMTA1Q9Y6Y1 1673 aa27.61■■■□□ 2.01
SPAST-204ENST00000621856 HTATSF1O43719 755 aaKnown RBP27.61■■■□□ 2.01
SPAST-204ENST00000621856 COL18A1P39060 1754 aa27.6■■■□□ 2.01
SPAST-204ENST00000621856 GNAT3A8MTJ3 354 aa27.6■■■□□ 2.01
SPAST-204ENST00000621856 SSH1Q8WYL5 1049 aa27.6■■■□□ 2.01
SPAST-204ENST00000621856 MAP3K5Q99683 1374 aa27.59■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms