RNA–Protein interactions for RNA: ENST00000618207.4

CIITA-212, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5 BASIC

Gene CIITA, Length 2,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-212ENST00000618207 TRIM27P14373 513 aa15.9■□□□□ 0.14
CIITA-212ENST00000618207 NFE2L2Q16236 605 aa15.9■□□□□ 0.14
CIITA-212ENST00000618207 C14orf37Q86TY3 774 aa15.9■□□□□ 0.14
CIITA-212ENST00000618207 NBR1Q14596 966 aa15.9■□□□□ 0.14
CIITA-212ENST00000618207 KNDC1Q76NI1 1749 aa15.89■□□□□ 0.13
CIITA-212ENST00000618207 TSPYL6Q8N831 410 aa15.89■□□□□ 0.13
CIITA-212ENST00000618207 TBX22Q9Y458 520 aa15.89■□□□□ 0.13
CIITA-212ENST00000618207 ITSN1Q15811 1721 aa15.89■□□□□ 0.13
CIITA-212ENST00000618207 EIF4A2Q14240 407 aaKnown RBP15.88■□□□□ 0.13
CIITA-212ENST00000618207 MVPQ14764 893 aaKnown RBP15.87■□□□□ 0.13
CIITA-212ENST00000618207 PLEKHG3A1L390 1219 aa15.86■□□□□ 0.13
CIITA-212ENST00000618207 RGPD8O14715 1765 aaPredicted RBP15.86■□□□□ 0.13
CIITA-212ENST00000618207 MON2Q7Z3U7 1717 aa15.86■□□□□ 0.13
CIITA-212ENST00000618207 ATF7IPQ6VMQ6 1270 aa15.86■□□□□ 0.13
CIITA-212ENST00000618207 TMEM57Q8N5G2 664 aa15.85■□□□□ 0.13
CIITA-212ENST00000618207 USP6P35125 1406 aa15.85■□□□□ 0.13
CIITA-212ENST00000618207 MBIPQ9NS73 344 aa15.85■□□□□ 0.13
CIITA-212ENST00000618207 AATKQ6ZMQ8 1374 aa15.84■□□□□ 0.13
CIITA-212ENST00000618207 AKAP12Q02952 1782 aa15.84■□□□□ 0.13
CIITA-212ENST00000618207 IL16Q14005 1332 aa15.84■□□□□ 0.13
CIITA-212ENST00000618207 NLRP6P59044 892 aa15.84■□□□□ 0.13
CIITA-212ENST00000618207 FAM161AQ3B820 660 aa15.84■□□□□ 0.13
CIITA-212ENST00000618207 C8orf34Q49A92 452 aa15.84■□□□□ 0.13
CIITA-212ENST00000618207 CDK12Q9NYV4 1490 aaPredicted RBP15.84■□□□□ 0.13
CIITA-212ENST00000618207 SLC4A3P48751 1232 aa15.84■□□□□ 0.13
CIITA-212ENST00000618207 NCBP3Q53F19 620 aaKnown RBP15.84■□□□□ 0.13
CIITA-212ENST00000618207 MCM10Q7L590 875 aa15.84■□□□□ 0.13
CIITA-212ENST00000618207 ZBTB7CA1YPR0 619 aa15.83■□□□□ 0.12
CIITA-212ENST00000618207 KRT24Q2M2I5 525 aa15.83■□□□□ 0.12
CIITA-212ENST00000618207 LTV1Q96GA3 475 aaPredicted RBP15.83■□□□□ 0.12
CIITA-212ENST00000618207 AMPHP49418 695 aa15.82■□□□□ 0.12
CIITA-212ENST00000618207 MAP3K19Q56UN5 1328 aa15.82■□□□□ 0.12
CIITA-212ENST00000618207 CT47B1P0C2W7 299 aaPredicted RBP15.82■□□□□ 0.12
CIITA-212ENST00000618207 PDZRN3Q9UPQ7 1066 aa15.82■□□□□ 0.12
CIITA-212ENST00000618207 C8orf58Q8NAV2 365 aa15.81■□□□□ 0.12
CIITA-212ENST00000618207 ARHGAP23Q9P227 1491 aa15.81■□□□□ 0.12
CIITA-212ENST00000618207 SLIT1O75093 1534 aa15.81■□□□□ 0.12
CIITA-212ENST00000618207 GNAI1P63096 354 aa15.81■□□□□ 0.12
CIITA-212ENST00000618207 FOXO3O43524 673 aa15.81■□□□□ 0.12
CIITA-212ENST00000618207 MIS18AQ9NYP9 233 aa15.81■□□□□ 0.12
CIITA-212ENST00000618207 VAMP4O75379 141 aa15.8■□□□□ 0.12
CIITA-212ENST00000618207 TWISTNBQ3B726 338 aaPredicted RBP15.8■□□□□ 0.12
CIITA-212ENST00000618207 RWDD1Q9H446 243 aaPredicted RBP15.8■□□□□ 0.12
CIITA-212ENST00000618207 DLG5Q8TDM6 1919 aa15.8■□□□□ 0.12
CIITA-212ENST00000618207 SETD1BQ9UPS6 1966 aaKnown RBP15.8■□□□□ 0.12
CIITA-212ENST00000618207 ANKLE2Q86XL3 938 aa15.8■□□□□ 0.12
CIITA-212ENST00000618207 ABTB2Q8N961 1025 aa15.8■□□□□ 0.12
CIITA-212ENST00000618207 C1orf115Q9H7X2 142 aa15.79■□□□□ 0.12
CIITA-212ENST00000618207 RIMS1Q86UR5 1692 aaKnown RBP15.79■□□□□ 0.12
CIITA-212ENST00000618207 IPO8O15397 1037 aaKnown RBP15.79■□□□□ 0.12
CIITA-212ENST00000618207 OVOS2A0A0J9YW53 1432 aa15.79■□□□□ 0.12
CIITA-212ENST00000618207 OVOS2Q6IE36 1432 aa15.79■□□□□ 0.12
CIITA-212ENST00000618207 DDX19BQ9UMR2 479 aa15.78■□□□□ 0.12
CIITA-212ENST00000618207 KIF16BQ96L93 1317 aa15.78■□□□□ 0.12
CIITA-212ENST00000618207 CALD1Q05682 793 aaKnown RBP15.78■□□□□ 0.12
CIITA-212ENST00000618207 IFT57Q9NWB7 429 aa15.78■□□□□ 0.12
CIITA-212ENST00000618207 XPCQ01831 940 aaPredicted RBP15.77■□□□□ 0.12
CIITA-212ENST00000618207 CFAP44Q96MT7 982 aa15.77■□□□□ 0.12
CIITA-212ENST00000618207 DIP2AQ14689 1571 aa15.77■□□□□ 0.12
CIITA-212ENST00000618207 SEC24BO95487 1268 aa15.77■□□□□ 0.11
CIITA-212ENST00000618207 LMOD3Q0VAK6 560 aa15.77■□□□□ 0.11
CIITA-212ENST00000618207 ESCO1Q5FWF5 840 aa15.76■□□□□ 0.11
CIITA-212ENST00000618207 LMOD2Q6P5Q4 547 aa15.75■□□□□ 0.11
CIITA-212ENST00000618207 CEP170BQ9Y4F5 1589 aaPredicted RBP15.75■□□□□ 0.11
CIITA-212ENST00000618207 PTCH1Q13635 1447 aa15.75■□□□□ 0.11
CIITA-212ENST00000618207 TOPAZ1Q8N9V7 1692 aa15.75■□□□□ 0.11
CIITA-212ENST00000618207 ZNF853P0CG23 659 aa15.75■□□□□ 0.11
CIITA-212ENST00000618207 ALDH1L2Q3SY69 923 aa15.75■□□□□ 0.11
CIITA-212ENST00000618207 MRPL50Q8N5N7 158 aaKnown RBP15.75■□□□□ 0.11
CIITA-212ENST00000618207 TTC21AQ8NDW8 1320 aa15.74■□□□□ 0.11
CIITA-212ENST00000618207 USHBP1Q8N6Y0 703 aa15.74■□□□□ 0.11
CIITA-212ENST00000618207 EYA1Q99502 592 aa15.74■□□□□ 0.11
CIITA-212ENST00000618207 PEAK1Q9H792 1746 aa15.74■□□□□ 0.11
CIITA-212ENST00000618207 NRKQ7Z2Y5 1582 aa15.74■□□□□ 0.11
CIITA-212ENST00000618207 MTHFSDQ2M296 383 aaKnown RBP15.73■□□□□ 0.11
CIITA-212ENST00000618207 SSH2Q76I76 1423 aa15.72■□□□□ 0.11
CIITA-212ENST00000618207 ZBTB40Q9NUA8 1239 aa15.72■□□□□ 0.11
CIITA-212ENST00000618207 PHF8Q9UPP1 1060 aa15.72■□□□□ 0.11
CIITA-212ENST00000618207 RTF1Q92541 710 aaKnown RBP15.72■□□□□ 0.11
CIITA-212ENST00000618207 AAMPQ13685 434 aa15.71■□□□□ 0.11
CIITA-212ENST00000618207 USP31Q70CQ4 1352 aa15.71■□□□□ 0.11
CIITA-212ENST00000618207 FLT4P35916 1363 aa15.71■□□□□ 0.1
CIITA-212ENST00000618207 PSME1Q06323 249 aa15.71■□□□□ 0.1
CIITA-212ENST00000618207 NECTIN2Q92692 538 aa15.7■□□□□ 0.1
CIITA-212ENST00000618207 LNPKQ9C0E8 428 aa15.7■□□□□ 0.1
CIITA-212ENST00000618207 SBNO1A3KN83 1393 aa15.69■□□□□ 0.1
CIITA-212ENST00000618207 HOXC9P31274 260 aa15.69■□□□□ 0.1
CIITA-212ENST00000618207 ORAI2Q96SN7 254 aa15.69■□□□□ 0.1
CIITA-212ENST00000618207 DDRGK1Q96HY6 314 aa15.68■□□□□ 0.1
CIITA-212ENST00000618207 TSPYL4Q9UJ04 414 aa15.68■□□□□ 0.1
CIITA-212ENST00000618207 XRN1Q8IZH2 1706 aaKnown RBP15.68■□□□□ 0.1
CIITA-212ENST00000618207 PIK3C2AO00443 1686 aa15.67■□□□□ 0.1
CIITA-212ENST00000618207 ZBTB7BO15156 539 aaPredicted RBP15.67■□□□□ 0.1
CIITA-212ENST00000618207 ZNF428Q96B54 188 aa15.67■□□□□ 0.1
CIITA-212ENST00000618207 CHL1O00533 1208 aa15.67■□□□□ 0.1
CIITA-212ENST00000618207 HDAC1Q13547 482 aaPredicted RBP15.66■□□□□ 0.1
CIITA-212ENST00000618207 ANKRD45Q5TZF3 282 aa15.65■□□□□ 0.1
CIITA-212ENST00000618207 NALCNQ8IZF0 1738 aa15.65■□□□□ 0.1
CIITA-212ENST00000618207 SLC4A2P04920 1241 aa15.65■□□□□ 0.1
CIITA-212ENST00000618207 SLC4A10Q6U841 1118 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms