RNA–Protein interactions for RNA: ENST00000617310.4

SMARCA1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

TSL 2

Gene SMARCA1, Length 4,291 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-205ENST00000617310 C8orf37Q96NL8 207 aa12.34□□□□□ -0.43
SMARCA1-205ENST00000617310 PDZRN3Q9UPQ7 1066 aa12.34□□□□□ -0.43
SMARCA1-205ENST00000617310 KIF3AQ9Y496 699 aa12.34□□□□□ -0.43
SMARCA1-205ENST00000617310 EXOC5O00471 708 aa12.34□□□□□ -0.43
SMARCA1-205ENST00000617310 CTDP1Q9Y5B0 961 aaPredicted RBP12.34□□□□□ -0.43
SMARCA1-205ENST00000617310 RRP12Q5JTH9 1297 aaKnown RBP12.34□□□□□ -0.43
SMARCA1-205ENST00000617310 ZNF219Q9P2Y4 722 aaPredicted RBP12.34□□□□□ -0.43
SMARCA1-205ENST00000617310 EXOC6BQ9Y2D4 811 aa12.34□□□□□ -0.43
SMARCA1-205ENST00000617310 RAPGEF6Q8TEU7 1601 aa12.33□□□□□ -0.43
SMARCA1-205ENST00000617310 GPTP24298 496 aa12.33□□□□□ -0.44
SMARCA1-205ENST00000617310 PDE4CQ08493 712 aa12.33□□□□□ -0.44
SMARCA1-205ENST00000617310 CCDC57Q2TAC2 916 aa12.33□□□□□ -0.44
SMARCA1-205ENST00000617310 ANKRD24Q8TF21 1146 aa12.33□□□□□ -0.44
SMARCA1-205ENST00000617310 WDR63Q8IWG1 891 aa12.33□□□□□ -0.44
SMARCA1-205ENST00000617310 ZBTB3Q9H5J0 574 aa12.33□□□□□ -0.44
SMARCA1-205ENST00000617310 WWC3Q9ULE0 1092 aa12.33□□□□□ -0.44
SMARCA1-205ENST00000617310 EIF4G3O43432 1585 aaKnown RBP12.32□□□□□ -0.44
SMARCA1-205ENST00000617310 TOM1O60784 492 aa12.32□□□□□ -0.44
SMARCA1-205ENST00000617310 MSH6P52701 1360 aa12.32□□□□□ -0.44
SMARCA1-205ENST00000617310 RNF20Q5VTR2 975 aa12.32□□□□□ -0.44
SMARCA1-205ENST00000617310 INTS3Q68E01 1043 aaKnown RBP12.32□□□□□ -0.44
SMARCA1-205ENST00000617310 ACSBG1Q96GR2 724 aa12.32□□□□□ -0.44
SMARCA1-205ENST00000617310 ZNF518AQ6AHZ1 1483 aa12.32□□□□□ -0.44
SMARCA1-205ENST00000617310 ZMYM3Q14202 1370 aa12.32□□□□□ -0.44
SMARCA1-205ENST00000617310 PES1O00541 588 aaKnown RBP12.32□□□□□ -0.44
SMARCA1-205ENST00000617310 STARD3NLO95772 234 aa12.32□□□□□ -0.44
SMARCA1-205ENST00000617310 FKBP4Q02790 459 aaKnown RBP eCLIP12.32□□□□□ -0.44
SMARCA1-205ENST00000617310 SSH1Q8WYL5 1049 aa12.32□□□□□ -0.44
SMARCA1-205ENST00000617310 TEX14Q8IWB6 1497 aa12.32□□□□□ -0.44
SMARCA1-205ENST00000617310 SKAP1Q86WV1 359 aa12.31□□□□□ -0.44
SMARCA1-205ENST00000617310 LRRC59Q96AG4 307 aaKnown RBP12.31□□□□□ -0.44
SMARCA1-205ENST00000617310 AEBP1Q8IUX7 1158 aa12.31□□□□□ -0.44
SMARCA1-205ENST00000617310 TMEM57Q8N5G2 664 aa12.31□□□□□ -0.44
SMARCA1-205ENST00000617310 JARID2Q92833 1246 aaPredicted RBP12.31□□□□□ -0.44
SMARCA1-205ENST00000617310 RPRD2Q5VT52 1461 aaKnown RBP12.31□□□□□ -0.44
SMARCA1-205ENST00000617310 IKQ13123 557 aaPredicted RBP12.31□□□□□ -0.44
SMARCA1-205ENST00000617310 TBC1D2BQ9UPU7 963 aa12.31□□□□□ -0.44
SMARCA1-205ENST00000617310 FAM135AQ9P2D6 1515 aa12.31□□□□□ -0.44
SMARCA1-205ENST00000617310 ATP2B1P20020 1258 aa12.31□□□□□ -0.44
SMARCA1-205ENST00000617310 TAF7Q15545 349 aaPredicted RBP12.31□□□□□ -0.44
SMARCA1-205ENST00000617310 ATP2B2Q01814 1243 aa12.3□□□□□ -0.44
SMARCA1-205ENST00000617310 PIP4K2AP48426 406 aaPredicted RBP12.3□□□□□ -0.44
SMARCA1-205ENST00000617310 CCT4P50991 539 aaKnown RBP12.3□□□□□ -0.44
SMARCA1-205ENST00000617310 NAP1L5Q96NT1 182 aaPredicted RBP12.3□□□□□ -0.44
SMARCA1-205ENST00000617310 RIMS2Q9UQ26 1411 aa12.3□□□□□ -0.44
SMARCA1-205ENST00000617310 ERICH2A1L162 156 aa12.29□□□□□ -0.44
SMARCA1-205ENST00000617310 SLC39A6Q13433 755 aa12.29□□□□□ -0.44
SMARCA1-205ENST00000617310 C22orf23Q9BZE7 217 aa12.29□□□□□ -0.44
SMARCA1-205ENST00000617310 CEP126Q9P2H0 1117 aa12.29□□□□□ -0.44
SMARCA1-205ENST00000617310 TTC21BQ7Z4L5 1316 aa12.29□□□□□ -0.44
SMARCA1-205ENST00000617310 DDX49Q9Y6V7 483 aaKnown RBP12.29□□□□□ -0.44
SMARCA1-205ENST00000617310 MAP3K1Q13233 1512 aa12.29□□□□□ -0.44
SMARCA1-205ENST00000617310 PHF14O94880 888 aa12.29□□□□□ -0.44
SMARCA1-205ENST00000617310 PDE3AQ14432 1141 aa12.29□□□□□ -0.44
SMARCA1-205ENST00000617310 DDX17Q92841 729 aaKnown RBP12.29□□□□□ -0.44
SMARCA1-205ENST00000617310 CCDC34Q96HJ3 373 aa12.29□□□□□ -0.44
SMARCA1-205ENST00000617310 MYD88Q99836 296 aa12.29□□□□□ -0.44
SMARCA1-205ENST00000617310 SCAF11Q99590 1463 aaKnown RBP12.29□□□□□ -0.44
SMARCA1-205ENST00000617310 ATP5J2-PTCD1G3V325 749 aa12.28□□□□□ -0.44
SMARCA1-205ENST00000617310 C20orf194Q5TEA3 1177 aa12.28□□□□□ -0.44
SMARCA1-205ENST00000617310 AACSQ86V21 672 aa12.28□□□□□ -0.44
SMARCA1-205ENST00000617310 ABCF2Q9UG63 623 aa12.28□□□□□ -0.44
SMARCA1-205ENST00000617310 RBM5P52756 815 aaKnown RBP eCLIP12.28□□□□□ -0.449e-8■□□□□ 9.1
SMARCA1-205ENST00000617310 SLFN5Q08AF3 891 aa12.28□□□□□ -0.44
SMARCA1-205ENST00000617310 CHAF1AQ13111 956 aaPredicted RBP12.28□□□□□ -0.44
SMARCA1-205ENST00000617310 TRIM29Q14134 588 aa12.28□□□□□ -0.44
SMARCA1-205ENST00000617310 TTC39AQ5SRH9 613 aa12.28□□□□□ -0.44
SMARCA1-205ENST00000617310 CNTROBQ8N137 903 aa12.28□□□□□ -0.44
SMARCA1-205ENST00000617310 ORAI2Q96SN7 254 aa12.28□□□□□ -0.44
SMARCA1-205ENST00000617310 NPHP3Q7Z494 1330 aa12.28□□□□□ -0.44
SMARCA1-205ENST00000617310 DEKP35659 375 aaKnown RBP12.28□□□□□ -0.44
SMARCA1-205ENST00000617310 CDC45O75419 566 aa12.28□□□□□ -0.44
SMARCA1-205ENST00000617310 MVPQ14764 893 aaKnown RBP12.28□□□□□ -0.44
SMARCA1-205ENST00000617310 SYAP1Q96A49 352 aaPredicted RBP12.28□□□□□ -0.44
SMARCA1-205ENST00000617310 C19orf44Q9H6X5 657 aa12.28□□□□□ -0.44
SMARCA1-205ENST00000617310 ABCC2Q92887 1545 aa12.27□□□□□ -0.44
SMARCA1-205ENST00000617310 CCDC158Q5M9N0 1113 aa12.27□□□□□ -0.44
SMARCA1-205ENST00000617310 ZPR1O75312 459 aa12.27□□□□□ -0.45
SMARCA1-205ENST00000617310 AMOTQ4VCS5 1084 aa12.27□□□□□ -0.45
SMARCA1-205ENST00000617310 NUP160Q12769 1436 aa12.27□□□□□ -0.45
SMARCA1-205ENST00000617310 TCEAL9Q9UHQ7 104 aa12.27□□□□□ -0.45
SMARCA1-205ENST00000617310 LRRCC1Q9C099 1032 aa12.26□□□□□ -0.45
SMARCA1-205ENST00000617310 BCL11BQ9C0K0 894 aaPredicted RBP12.26□□□□□ -0.45
SMARCA1-205ENST00000617310 CWC22Q9HCG8 908 aaKnown RBP12.26□□□□□ -0.45
SMARCA1-205ENST00000617310 NEK4P51957 841 aa12.26□□□□□ -0.45
SMARCA1-205ENST00000617310 NUTM1Q86Y26 1132 aa12.26□□□□□ -0.45
SMARCA1-205ENST00000617310 KIAA0556O60303 1618 aa12.26□□□□□ -0.45
SMARCA1-205ENST00000617310 SMC3Q9UQE7 1217 aa12.26□□□□□ -0.45
SMARCA1-205ENST00000617310 ABCC10Q5T3U5 1492 aa12.26□□□□□ -0.45
SMARCA1-205ENST00000617310 IDH1O75874 414 aaKnown RBP12.25□□□□□ -0.45
SMARCA1-205ENST00000617310 MSNP26038 577 aaKnown RBP12.25□□□□□ -0.45
SMARCA1-205ENST00000617310 IFNL2Q8IZJ0 200 aa12.25□□□□□ -0.45
SMARCA1-205ENST00000617310 TRMT112Q9UI30 125 aaKnown RBP12.25□□□□□ -0.45
SMARCA1-205ENST00000617310 UGGT2Q9NYU1 1516 aa12.25□□□□□ -0.45
SMARCA1-205ENST00000617310 DCAF8L1A6NGE4 600 aa12.25□□□□□ -0.45
SMARCA1-205ENST00000617310 SMARCA5O60264 1052 aaPredicted RBP12.25□□□□□ -0.45
SMARCA1-205ENST00000617310 FANCIQ9NVI1 1328 aa12.25□□□□□ -0.45
SMARCA1-205ENST00000617310 L1TD1Q5T7N2 865 aaKnown RBP12.25□□□□□ -0.45
SMARCA1-205ENST00000617310 DISP1Q96F81 1524 aa12.25□□□□□ -0.45
SMARCA1-205ENST00000617310 CFAP43Q8NDM7 1665 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms