RNA–Protein interactions for RNA: ENST00000610828.4

NEK3-205, Transcript of NIMA related kinase 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene NEK3, Length 2,396 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-205ENST00000610828 THUMPD2Q9BTF0 503 aaKnown RBP17.47■□□□□ 0.39
NEK3-205ENST00000610828 AAMPQ13685 434 aa17.47■□□□□ 0.39
NEK3-205ENST00000610828 DZIP1LQ8IYY4 767 aaKnown RBP17.47■□□□□ 0.39
NEK3-205ENST00000610828 XRN1Q8IZH2 1706 aaKnown RBP17.47■□□□□ 0.39
NEK3-205ENST00000610828 IPO9Q96P70 1041 aaKnown RBP17.46■□□□□ 0.39
NEK3-205ENST00000610828 EIF4A2Q14240 407 aaKnown RBP17.46■□□□□ 0.39
NEK3-205ENST00000610828 RGPD8O14715 1765 aaPredicted RBP17.46■□□□□ 0.39
NEK3-205ENST00000610828 CALD1Q05682 793 aaKnown RBP17.45■□□□□ 0.38
NEK3-205ENST00000610828 MVPQ14764 893 aaKnown RBP17.45■□□□□ 0.38
NEK3-205ENST00000610828 SSH2Q76I76 1423 aa17.45■□□□□ 0.38
NEK3-205ENST00000610828 TRIM27P14373 513 aa17.45■□□□□ 0.38
NEK3-205ENST00000610828 NOP58Q9Y2X3 529 aaKnown RBP17.45■□□□□ 0.38
NEK3-205ENST00000610828 TTC21AQ8NDW8 1320 aa17.45■□□□□ 0.38
NEK3-205ENST00000610828 PCDHB15Q9Y5E8 787 aa17.44■□□□□ 0.38
NEK3-205ENST00000610828 NALCNQ8IZF0 1738 aa17.44■□□□□ 0.38
NEK3-205ENST00000610828 HSP90AB2PQ58FF8 381 aa17.43■□□□□ 0.38
NEK3-205ENST00000610828 NOB1Q9ULX3 412 aaKnown RBP17.43■□□□□ 0.38
NEK3-205ENST00000610828 USP31Q70CQ4 1352 aa17.43■□□□□ 0.38
NEK3-205ENST00000610828 PIK3R4Q99570 1358 aa17.43■□□□□ 0.38
NEK3-205ENST00000610828 LMOD3Q0VAK6 560 aa17.43■□□□□ 0.38
NEK3-205ENST00000610828 SULT6B1Q6IMI4 303 aa17.43■□□□□ 0.38
NEK3-205ENST00000610828 ATF7IPQ6VMQ6 1270 aa17.43■□□□□ 0.38
NEK3-205ENST00000610828 AEBP1Q8IUX7 1158 aa17.43■□□□□ 0.38
NEK3-205ENST00000610828 GNAI1P63096 354 aa17.42■□□□□ 0.38
NEK3-205ENST00000610828 ANKLE2Q86XL3 938 aa17.42■□□□□ 0.38
NEK3-205ENST00000610828 DLG5Q8TDM6 1919 aa17.42■□□□□ 0.38
NEK3-205ENST00000610828 IFT57Q9NWB7 429 aa17.42■□□□□ 0.38
NEK3-205ENST00000610828 KIF16BQ96L93 1317 aa17.41■□□□□ 0.38
NEK3-205ENST00000610828 FAM161AQ3B820 660 aa17.41■□□□□ 0.38
NEK3-205ENST00000610828 ALDH1L2Q3SY69 923 aa17.41■□□□□ 0.38
NEK3-205ENST00000610828 PEAK1Q9H792 1746 aa17.41■□□□□ 0.38
NEK3-205ENST00000610828 FAM83GA6ND36 823 aa17.4■□□□□ 0.38
NEK3-205ENST00000610828 ITPRIPQ8IWB1 547 aa17.4■□□□□ 0.38
NEK3-205ENST00000610828 IPO8O15397 1037 aaKnown RBP17.39■□□□□ 0.38
NEK3-205ENST00000610828 PAK3O75914 559 aaPredicted RBP17.39■□□□□ 0.38
NEK3-205ENST00000610828 MBIPQ9NS73 344 aa17.39■□□□□ 0.38
NEK3-205ENST00000610828 ZBTB47Q9UFB7 747 aaPredicted RBP17.39■□□□□ 0.38
NEK3-205ENST00000610828 DCTN1Q14203 1278 aa17.39■□□□□ 0.37
NEK3-205ENST00000610828 C8orf34Q49A92 452 aa17.39■□□□□ 0.37
NEK3-205ENST00000610828 MAP3K19Q56UN5 1328 aa17.39■□□□□ 0.37
NEK3-205ENST00000610828 ANKARQ7Z5J8 1434 aa17.39■□□□□ 0.37
NEK3-205ENST00000610828 ZNF853P0CG23 659 aa17.38■□□□□ 0.37
NEK3-205ENST00000610828 ZNF428Q96B54 188 aa17.38■□□□□ 0.37
NEK3-205ENST00000610828 DDX19BQ9UMR2 479 aa17.38■□□□□ 0.37
NEK3-205ENST00000610828 CFAP44Q96MT7 982 aa17.38■□□□□ 0.37
NEK3-205ENST00000610828 RWDD1Q9H446 243 aaPredicted RBP17.38■□□□□ 0.37
NEK3-205ENST00000610828 ELL2O00472 640 aaPredicted RBP17.37■□□□□ 0.37
NEK3-205ENST00000610828 TSPYL6Q8N831 410 aa17.37■□□□□ 0.37
NEK3-205ENST00000610828 VAMP4O75379 141 aa17.37■□□□□ 0.37
NEK3-205ENST00000610828 NLRP6P59044 892 aa17.37■□□□□ 0.37
NEK3-205ENST00000610828 TMEM57Q8N5G2 664 aa17.37■□□□□ 0.37
NEK3-205ENST00000610828 FMN2Q9NZ56 1722 aa17.36■□□□□ 0.37
NEK3-205ENST00000610828 PIK3C2AO00443 1686 aa17.36■□□□□ 0.37
NEK3-205ENST00000610828 ZNF142P52746 1687 aaPredicted RBP17.36■□□□□ 0.37
NEK3-205ENST00000610828 RBM33Q96EV2 1170 aaKnown RBP17.36■□□□□ 0.37
NEK3-205ENST00000610828 FLT4P35916 1363 aa17.35■□□□□ 0.37
NEK3-205ENST00000610828 AMPHP49418 695 aa17.35■□□□□ 0.37
NEK3-205ENST00000610828 SBNO1A3KN83 1393 aa17.35■□□□□ 0.37
NEK3-205ENST00000610828 TWISTNBQ3B726 338 aaPredicted RBP17.35■□□□□ 0.37
NEK3-205ENST00000610828 NUTM2GQ5VZR2 741 aa17.35■□□□□ 0.37
NEK3-205ENST00000610828 ADAMTSL3P82987 1691 aa17.34■□□□□ 0.37
NEK3-205ENST00000610828 CHD2O14647 1828 aaKnown RBP17.34■□□□□ 0.37
NEK3-205ENST00000610828 RGPD1P0DJD0 1748 aa17.34■□□□□ 0.37
NEK3-205ENST00000610828 BRPF1P55201 1214 aaPredicted RBP17.33■□□□□ 0.37
NEK3-205ENST00000610828 ABTB2Q8N961 1025 aa17.32■□□□□ 0.36
NEK3-205ENST00000610828 C8orf58Q8NAV2 365 aa17.32■□□□□ 0.36
NEK3-205ENST00000610828 PDZRN3Q9UPQ7 1066 aa17.32■□□□□ 0.36
NEK3-205ENST00000610828 MCM10Q7L590 875 aa17.32■□□□□ 0.36
NEK3-205ENST00000610828 MRPL50Q8N5N7 158 aaKnown RBP17.32■□□□□ 0.36
NEK3-205ENST00000610828 ARHGEF10O15013 1369 aa17.32■□□□□ 0.36
NEK3-205ENST00000610828 SETD1BQ9UPS6 1966 aaKnown RBP17.32■□□□□ 0.36
NEK3-205ENST00000610828 C14orf37Q86TY3 774 aa17.31■□□□□ 0.36
NEK3-205ENST00000610828 ZBTB40Q9NUA8 1239 aa17.3■□□□□ 0.36
NEK3-205ENST00000610828 PHF8Q9UPP1 1060 aa17.3■□□□□ 0.36
NEK3-205ENST00000610828 ARHGAP45Q92619 1136 aa17.29■□□□□ 0.36
NEK3-205ENST00000610828 EYA1Q99502 592 aa17.29■□□□□ 0.36
NEK3-205ENST00000610828 HDAC1Q13547 482 aaPredicted RBP17.28■□□□□ 0.36
NEK3-205ENST00000610828 FOXO3O43524 673 aa17.27■□□□□ 0.36
NEK3-205ENST00000610828 MTHFSDQ2M296 383 aaKnown RBP17.27■□□□□ 0.36
NEK3-205ENST00000610828 DDRGK1Q96HY6 314 aa17.27■□□□□ 0.36
NEK3-205ENST00000610828 IGSF1Q8N6C5 1336 aa17.27■□□□□ 0.36
NEK3-205ENST00000610828 KDRP35968 1356 aa17.27■□□□□ 0.35
NEK3-205ENST00000610828 HOXC9P31274 260 aa17.26■□□□□ 0.35
NEK3-205ENST00000610828 MARF1Q9Y4F3 1742 aaKnown RBP17.26■□□□□ 0.35
NEK3-205ENST00000610828 NPHP4O75161 1426 aaPredicted RBP17.26■□□□□ 0.35
NEK3-205ENST00000610828 CHL1O00533 1208 aa17.26■□□□□ 0.35
NEK3-205ENST00000610828 ESCO1Q5FWF5 840 aa17.26■□□□□ 0.35
NEK3-205ENST00000610828 ADGRL3Q9HAR2 1447 aa17.26■□□□□ 0.35
NEK3-205ENST00000610828 VIRMAQ69YN4 1812 aaKnown RBP17.26■□□□□ 0.35
NEK3-205ENST00000610828 KRT24Q2M2I5 525 aa17.25■□□□□ 0.35
NEK3-205ENST00000610828 RTF1Q92541 710 aaKnown RBP17.25■□□□□ 0.35
NEK3-205ENST00000610828 KIF24Q5T7B8 1368 aa17.24■□□□□ 0.35
NEK3-205ENST00000610828 PRKCSHP14314 528 aaPredicted RBP17.24■□□□□ 0.35
NEK3-205ENST00000610828 PSME1Q06323 249 aa17.24■□□□□ 0.35
NEK3-205ENST00000610828 LTV1Q96GA3 475 aaPredicted RBP17.24■□□□□ 0.35
NEK3-205ENST00000610828 ABCC4O15439 1325 aa17.23■□□□□ 0.35
NEK3-205ENST00000610828 ZBTB7BO15156 539 aaPredicted RBP17.23■□□□□ 0.35
NEK3-205ENST00000610828 USP54Q70EL1 1684 aa17.23■□□□□ 0.35
NEK3-205ENST00000610828 HAP1P54257 671 aaPredicted RBP17.23■□□□□ 0.35
NEK3-205ENST00000610828 GAS2L2Q8NHY3 880 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms