RNA–Protein interactions for RNA: ENST00000594948.5

VRK3-209, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 2 BASIC

Gene VRK3, Length 1,847 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-209ENST00000594948 SAFB2Q14151 953 aaKnown RBP eCLIP16.54■□□□□ 0.24
VRK3-209ENST00000594948 IFT57Q9NWB7 429 aa16.54■□□□□ 0.24
VRK3-209ENST00000594948 STK26Q9P289 416 aa16.54■□□□□ 0.24
VRK3-209ENST00000594948 RIMBP3CA6NJZ7 1639 aa16.54■□□□□ 0.24
VRK3-209ENST00000594948 RIMBP3BA6NNM3 1639 aa16.54■□□□□ 0.24
VRK3-209ENST00000594948 RIMBP3Q9UFD9 1639 aa16.54■□□□□ 0.24
VRK3-209ENST00000594948 VAMP4O75379 141 aa16.54■□□□□ 0.24
VRK3-209ENST00000594948 GNAI1P63096 354 aa16.54■□□□□ 0.24
VRK3-209ENST00000594948 MON2Q7Z3U7 1717 aa16.53■□□□□ 0.24
VRK3-209ENST00000594948 HSP90AB1P08238 724 aaKnown RBP16.53■□□□□ 0.24
VRK3-209ENST00000594948 KIF2CQ99661 725 aa16.53■□□□□ 0.24
VRK3-209ENST00000594948 GRPEL1Q9HAV7 217 aa16.53■□□□□ 0.24
VRK3-209ENST00000594948 ZNF853P0CG23 659 aa16.52■□□□□ 0.24
VRK3-209ENST00000594948 PRKAR2BP31323 418 aa16.52■□□□□ 0.24
VRK3-209ENST00000594948 TNPO1Q92973 898 aaKnown RBP16.52■□□□□ 0.24
VRK3-209ENST00000594948 CDK19Q9BWU1 502 aa16.52■□□□□ 0.24
VRK3-209ENST00000594948 CLEC17AQ6ZS10 378 aa16.52■□□□□ 0.23
VRK3-209ENST00000594948 AKAP12Q02952 1782 aa16.51■□□□□ 0.23
VRK3-209ENST00000594948 LMOD3Q0VAK6 560 aa16.51■□□□□ 0.23
VRK3-209ENST00000594948 KNDC1Q76NI1 1749 aa16.51■□□□□ 0.23
VRK3-209ENST00000594948 GZF1Q9H116 711 aaPredicted RBP16.51■□□□□ 0.23
VRK3-209ENST00000594948 POLKQ9UBT6 870 aa16.51■□□□□ 0.23
VRK3-209ENST00000594948 AATKQ6ZMQ8 1374 aa16.51■□□□□ 0.23
VRK3-209ENST00000594948 EDC4Q6P2E9 1401 aaKnown RBP16.5■□□□□ 0.23
VRK3-209ENST00000594948 K7ELQ4 463 aaPredicted RBP16.5■□□□□ 0.23
VRK3-209ENST00000594948 ANKRD45Q5TZF3 282 aa16.5■□□□□ 0.23
VRK3-209ENST00000594948 PANK2Q9BZ23 570 aa16.5■□□□□ 0.23
VRK3-209ENST00000594948 API5Q9BZZ5 524 aaKnown RBP16.49■□□□□ 0.23
VRK3-209ENST00000594948 NRKQ7Z2Y5 1582 aa16.49■□□□□ 0.23
VRK3-209ENST00000594948 CDC45O75419 566 aa16.49■□□□□ 0.23
VRK3-209ENST00000594948 TBC1D9Q6ZT07 1266 aa16.49■□□□□ 0.23
VRK3-209ENST00000594948 UBE2Q2Q8WVN8 375 aa16.49■□□□□ 0.23
VRK3-209ENST00000594948 IBTKQ9P2D0 1353 aaPredicted RBP16.49■□□□□ 0.23
VRK3-209ENST00000594948 CPSF1Q10570 1443 aaKnown RBP16.48■□□□□ 0.23
VRK3-209ENST00000594948 ITSN1Q15811 1721 aa16.48■□□□□ 0.23
VRK3-209ENST00000594948 CABP1Q9NZU7 370 aa16.48■□□□□ 0.23
VRK3-209ENST00000594948 RAPGEF3O95398 923 aa16.47■□□□□ 0.23
VRK3-209ENST00000594948 IL13P35225 146 aa16.47■□□□□ 0.23
VRK3-209ENST00000594948 C3P01024 1663 aa16.46■□□□□ 0.23
VRK3-209ENST00000594948 SIRT2Q8IXJ6 389 aa16.46■□□□□ 0.23
VRK3-209ENST00000594948 RIMS2Q9UQ26 1411 aa16.45■□□□□ 0.22
VRK3-209ENST00000594948 SPATA31D1Q6ZQQ2 1576 aa16.45■□□□□ 0.22
VRK3-209ENST00000594948 TWISTNBQ3B726 338 aaPredicted RBP16.45■□□□□ 0.22
VRK3-209ENST00000594948 PHACTR3Q96KR7 559 aa16.45■□□□□ 0.22
VRK3-209ENST00000594948 MBIPQ9NS73 344 aa16.45■□□□□ 0.22
VRK3-209ENST00000594948 GOLGA6L22H0YM25 854 aa16.44■□□□□ 0.22
VRK3-209ENST00000594948 RABEP1Q15276 862 aa16.44■□□□□ 0.22
VRK3-209ENST00000594948 HSP90AA1P07900 732 aaKnown RBP16.43■□□□□ 0.22
VRK3-209ENST00000594948 HAP1P54257 671 aaPredicted RBP16.43■□□□□ 0.22
VRK3-209ENST00000594948 TSPYL6Q8N831 410 aa16.43■□□□□ 0.22
VRK3-209ENST00000594948 DCTPP1Q9H773 170 aa16.43■□□□□ 0.22
VRK3-209ENST00000594948 AGLP35573 1532 aa16.43■□□□□ 0.22
VRK3-209ENST00000594948 NRXN3Q9Y4C0 1643 aa16.42■□□□□ 0.22
VRK3-209ENST00000594948 ESPNB1AK53 854 aa16.42■□□□□ 0.22
VRK3-209ENST00000594948 INTS3Q68E01 1043 aaKnown RBP16.42■□□□□ 0.22
VRK3-209ENST00000594948 A2ML1A8K2U0 1454 aa16.41■□□□□ 0.22
VRK3-209ENST00000594948 CD2BP2O95400 341 aaKnown RBP16.41■□□□□ 0.22
VRK3-209ENST00000594948 ARXQ96QS3 562 aa16.41■□□□□ 0.22
VRK3-209ENST00000594948 C1orf115Q9H7X2 142 aa16.41■□□□□ 0.22
VRK3-209ENST00000594948 PPP6R1Q9UPN7 881 aa16.41■□□□□ 0.22
VRK3-209ENST00000594948 KLHL40Q2TBA0 621 aa16.4■□□□□ 0.22
VRK3-209ENST00000594948 PLEKHM2Q8IWE5 1019 aa16.4■□□□□ 0.22
VRK3-209ENST00000594948 AK9Q5TCS8 1911 aa16.4■□□□□ 0.22
VRK3-209ENST00000594948 HMOX1P09601 288 aa16.4■□□□□ 0.22
VRK3-209ENST00000594948 NUCB2P80303 420 aa16.4■□□□□ 0.22
VRK3-209ENST00000594948 TTC22Q5TAA0 569 aa16.4■□□□□ 0.22
VRK3-209ENST00000594948 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.4■□□□□ 0.22
VRK3-209ENST00000594948 GAS2L2Q8NHY3 880 aa16.4■□□□□ 0.22
VRK3-209ENST00000594948 ATP10DQ9P241 1426 aa16.4■□□□□ 0.22
VRK3-209ENST00000594948 GSPT1P15170 499 aaKnown RBP16.39■□□□□ 0.21
VRK3-209ENST00000594948 CCDC173Q0VFZ6 552 aa16.39■□□□□ 0.21
VRK3-209ENST00000594948 GAS2L3Q86XJ1 694 aa16.39■□□□□ 0.21
VRK3-209ENST00000594948 TRIM44Q96DX7 344 aaPredicted RBP16.39■□□□□ 0.21
VRK3-209ENST00000594948 PPP1R9BQ96SB3 815 aa16.39■□□□□ 0.21
VRK3-209ENST00000594948 THUMPD2Q9BTF0 503 aaKnown RBP16.39■□□□□ 0.21
VRK3-209ENST00000594948 RPAP2Q8IXW5 612 aaPredicted RBP16.38■□□□□ 0.21
VRK3-209ENST00000594948 ANKRD44Q8N8A2 993 aa16.38■□□□□ 0.21
VRK3-209ENST00000594948 C8orf58Q8NAV2 365 aa16.38■□□□□ 0.21
VRK3-209ENST00000594948 RGPD1P0DJD0 1748 aa16.38■□□□□ 0.21
VRK3-209ENST00000594948 KIAA0232Q92628 1395 aa16.38■□□□□ 0.21
VRK3-209ENST00000594948 BAG4O95429 457 aaKnown RBP16.38■□□□□ 0.21
VRK3-209ENST00000594948 SSFA2P28290 1259 aa16.38■□□□□ 0.21
VRK3-209ENST00000594948 EMILIN1Q9Y6C2 1016 aa16.38■□□□□ 0.21
VRK3-209ENST00000594948 TUBGCP6Q96RT7 1819 aa16.38■□□□□ 0.21
VRK3-209ENST00000594948 CPS1P31327 1500 aa16.37■□□□□ 0.21
VRK3-209ENST00000594948 RGS12O14924 1447 aa16.37■□□□□ 0.21
VRK3-209ENST00000594948 NALCNQ8IZF0 1738 aa16.37■□□□□ 0.21
VRK3-209ENST00000594948 SIRT1Q96EB6 747 aa16.37■□□□□ 0.21
VRK3-209ENST00000594948 NAP1L5Q96NT1 182 aaPredicted RBP16.37■□□□□ 0.21
VRK3-209ENST00000594948 CWC22Q9HCG8 908 aaKnown RBP16.37■□□□□ 0.21
VRK3-209ENST00000594948 WASLO00401 505 aaPredicted RBP16.36■□□□□ 0.21
VRK3-209ENST00000594948 CYP2E1P05181 493 aaPredicted RBP16.36■□□□□ 0.21
VRK3-209ENST00000594948 OSCARQ8IYS5 282 aa16.36■□□□□ 0.21
VRK3-209ENST00000594948 RBM42Q9BTD8 480 aaKnown RBP16.36■□□□□ 0.21
VRK3-209ENST00000594948 TECPR2O15040 1411 aa16.36■□□□□ 0.21
VRK3-209ENST00000594948 ZNF445P59923 1031 aa16.35■□□□□ 0.21
VRK3-209ENST00000594948 USP26Q9BXU7 913 aa16.35■□□□□ 0.21
VRK3-209ENST00000594948 PTPRCP08575 1304 aa16.35■□□□□ 0.21
VRK3-209ENST00000594948 TOPAZ1Q8N9V7 1692 aa16.35■□□□□ 0.21
VRK3-209ENST00000594948 CASC1Q6TDU7 716 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms