RNA–Protein interactions for RNA: ENST00000594104.1

VRK3-208, Transcript of vaccinia related kinase 3, humanhuman

Gene VRK3, Length 2,197 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-208ENST00000594104 PPIP5K1Q6PFW1 1433 aa14.9□□□□□ -0.02
VRK3-208ENST00000594104 NUDT16Q96DE0 195 aaKnown RBP14.9□□□□□ -0.02
VRK3-208ENST00000594104 IPO8O15397 1037 aaKnown RBP14.89□□□□□ -0.03
VRK3-208ENST00000594104 MVPQ14764 893 aaKnown RBP14.89□□□□□ -0.03
VRK3-208ENST00000594104 ALDH1L2Q3SY69 923 aa14.89□□□□□ -0.03
VRK3-208ENST00000594104 DZIP1LQ8IYY4 767 aaKnown RBP14.89□□□□□ -0.03
VRK3-208ENST00000594104 PLCD3Q8N3E9 789 aa14.89□□□□□ -0.03
VRK3-208ENST00000594104 CDK12Q9NYV4 1490 aaPredicted RBP14.89□□□□□ -0.03
VRK3-208ENST00000594104 RSPH6AQ9H0K4 717 aa14.88□□□□□ -0.03
VRK3-208ENST00000594104 PLEKHG1Q9ULL1 1385 aa14.88□□□□□ -0.03
VRK3-208ENST00000594104 PPM1GO15355 546 aaPredicted RBP14.87□□□□□ -0.03
VRK3-208ENST00000594104 EXOSC9Q06265 439 aaKnown RBP14.87□□□□□ -0.03
VRK3-208ENST00000594104 NFE2L2Q16236 605 aa14.87□□□□□ -0.03
VRK3-208ENST00000594104 TXNDC2Q86VQ3 553 aa14.87□□□□□ -0.03
VRK3-208ENST00000594104 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.87□□□□□ -0.03
VRK3-208ENST00000594104 USP35Q9P2H5 1018 aa14.87□□□□□ -0.03
VRK3-208ENST00000594104 KIF16BQ96L93 1317 aa14.86□□□□□ -0.03
VRK3-208ENST00000594104 RLBP1P12271 317 aa14.86□□□□□ -0.03
VRK3-208ENST00000594104 LMOD3Q0VAK6 560 aa14.86□□□□□ -0.03
VRK3-208ENST00000594104 COG3Q96JB2 828 aa14.86□□□□□ -0.03
VRK3-208ENST00000594104 FTSJ3Q8IY81 847 aaKnown RBP14.85□□□□□ -0.03
VRK3-208ENST00000594104 CHMP4BQ9H444 224 aaKnown RBP14.85□□□□□ -0.03
VRK3-208ENST00000594104 SMC4Q9NTJ3 1288 aa14.85□□□□□ -0.03
VRK3-208ENST00000594104 DDX19BQ9UMR2 479 aa14.85□□□□□ -0.03
VRK3-208ENST00000594104 IL13P35225 146 aa14.85□□□□□ -0.03
VRK3-208ENST00000594104 ATF7IPQ6VMQ6 1270 aa14.85□□□□□ -0.03
VRK3-208ENST00000594104 RGS3P49796 1198 aa14.84□□□□□ -0.03
VRK3-208ENST00000594104 SKAP1Q86WV1 359 aa14.84□□□□□ -0.03
VRK3-208ENST00000594104 UBR1Q8IWV7 1749 aa14.84□□□□□ -0.03
VRK3-208ENST00000594104 ADAMTS13Q76LX8 1427 aa14.84□□□□□ -0.03
VRK3-208ENST00000594104 PLEKHG3A1L390 1219 aa14.84□□□□□ -0.03
VRK3-208ENST00000594104 PRKAR2BP31323 418 aa14.84□□□□□ -0.03
VRK3-208ENST00000594104 SSH1Q8WYL5 1049 aa14.84□□□□□ -0.03
VRK3-208ENST00000594104 TSR2Q969E8 191 aaKnown RBP14.84□□□□□ -0.03
VRK3-208ENST00000594104 PCDHB15Q9Y5E8 787 aa14.84□□□□□ -0.03
VRK3-208ENST00000594104 HDAC1Q13547 482 aaPredicted RBP14.83□□□□□ -0.04
VRK3-208ENST00000594104 CCDC9Q9Y3X0 531 aaKnown RBP14.83□□□□□ -0.04
VRK3-208ENST00000594104 MON2Q7Z3U7 1717 aa14.83□□□□□ -0.04
VRK3-208ENST00000594104 LRRC7Q96NW7 1537 aa14.83□□□□□ -0.04
VRK3-208ENST00000594104 IFT57Q9NWB7 429 aa14.83□□□□□ -0.04
VRK3-208ENST00000594104 GNAI1P63096 354 aa14.82□□□□□ -0.04
VRK3-208ENST00000594104 RTL5Q5HYW3 569 aaPredicted RBP14.82□□□□□ -0.04
VRK3-208ENST00000594104 ARHGAP45Q92619 1136 aa14.82□□□□□ -0.04
VRK3-208ENST00000594104 NME9Q86XW9 330 aa14.81□□□□□ -0.04
VRK3-208ENST00000594104 EID1Q9Y6B2 187 aa14.81□□□□□ -0.04
VRK3-208ENST00000594104 TRIM27P14373 513 aa14.81□□□□□ -0.04
VRK3-208ENST00000594104 BCL2L13Q9BXK5 485 aa14.81□□□□□ -0.04
VRK3-208ENST00000594104 SLC24A3Q9HC58 644 aa14.81□□□□□ -0.04
VRK3-208ENST00000594104 AKAP12Q02952 1782 aa14.81□□□□□ -0.04
VRK3-208ENST00000594104 TBX22Q9Y458 520 aa14.8□□□□□ -0.04
VRK3-208ENST00000594104 ROBO2Q9HCK4 1378 aa14.8□□□□□ -0.04
VRK3-208ENST00000594104 ZNF853P0CG23 659 aa14.8□□□□□ -0.04
VRK3-208ENST00000594104 RNF25Q96BH1 459 aaPredicted RBP14.8□□□□□ -0.04
VRK3-208ENST00000594104 NOB1Q9ULX3 412 aaKnown RBP14.79□□□□□ -0.04
VRK3-208ENST00000594104 C3P01024 1663 aa14.79□□□□□ -0.04
VRK3-208ENST00000594104 SLIT1O75093 1534 aa14.79□□□□□ -0.04
VRK3-208ENST00000594104 ARHGAP23Q9P227 1491 aa14.79□□□□□ -0.04
VRK3-208ENST00000594104 PDZRN3Q9UPQ7 1066 aa14.78□□□□□ -0.04
VRK3-208ENST00000594104 EMILIN1Q9Y6C2 1016 aa14.78□□□□□ -0.04
VRK3-208ENST00000594104 PRR36Q9H6K5 1346 aa14.78□□□□□ -0.04
VRK3-208ENST00000594104 C1orf115Q9H7X2 142 aa14.78□□□□□ -0.04
VRK3-208ENST00000594104 TNNQ9UQP3 1299 aa14.78□□□□□ -0.04
VRK3-208ENST00000594104 MAP2P11137 1827 aaKnown RBP14.78□□□□□ -0.04
VRK3-208ENST00000594104 TTC21BQ7Z4L5 1316 aa14.77□□□□□ -0.04
VRK3-208ENST00000594104 ZC3H15Q8WU90 426 aaKnown RBP14.77□□□□□ -0.04
VRK3-208ENST00000594104 ITSN1Q15811 1721 aa14.77□□□□□ -0.04
VRK3-208ENST00000594104 ZBTB40Q9NUA8 1239 aa14.77□□□□□ -0.05
VRK3-208ENST00000594104 TTC21AQ8NDW8 1320 aa14.76□□□□□ -0.05
VRK3-208ENST00000594104 PHACTR3Q96KR7 559 aa14.76□□□□□ -0.05
VRK3-208ENST00000594104 LTKP29376 864 aa14.75□□□□□ -0.05
VRK3-208ENST00000594104 SMC5Q8IY18 1101 aa14.75□□□□□ -0.05
VRK3-208ENST00000594104 UPF2Q9HAU5 1272 aaKnown RBP14.75□□□□□ -0.05
VRK3-208ENST00000594104 PTCH1Q13635 1447 aa14.75□□□□□ -0.05
VRK3-208ENST00000594104 USP31Q70CQ4 1352 aa14.75□□□□□ -0.05
VRK3-208ENST00000594104 PIK3R4Q99570 1358 aa14.75□□□□□ -0.05
VRK3-208ENST00000594104 VAMP4O75379 141 aa14.75□□□□□ -0.05
VRK3-208ENST00000594104 DIP2AQ14689 1571 aa14.75□□□□□ -0.05
VRK3-208ENST00000594104 ITPRIPQ8IWB1 547 aa14.75□□□□□ -0.05
VRK3-208ENST00000594104 THEMISQ8N1K5 641 aaPredicted RBP14.75□□□□□ -0.05
VRK3-208ENST00000594104 KCNV2Q8TDN2 545 aa14.75□□□□□ -0.05
VRK3-208ENST00000594104 NRKQ7Z2Y5 1582 aa14.74□□□□□ -0.05
VRK3-208ENST00000594104 VIRMAQ69YN4 1812 aaKnown RBP14.74□□□□□ -0.05
VRK3-208ENST00000594104 ZBTB7CA1YPR0 619 aa14.74□□□□□ -0.05
VRK3-208ENST00000594104 TOPAZ1Q8N9V7 1692 aa14.74□□□□□ -0.05
VRK3-208ENST00000594104 KIF24Q5T7B8 1368 aa14.74□□□□□ -0.05
VRK3-208ENST00000594104 ACEP12821 1306 aa14.74□□□□□ -0.05
VRK3-208ENST00000594104 OVOS2A0A0J9YW53 1432 aa14.74□□□□□ -0.05
VRK3-208ENST00000594104 USP6P35125 1406 aa14.74□□□□□ -0.05
VRK3-208ENST00000594104 OVOS2Q6IE36 1432 aa14.74□□□□□ -0.05
VRK3-208ENST00000594104 DCAF8L1A6NGE4 600 aa14.74□□□□□ -0.05
VRK3-208ENST00000594104 HMOX1P09601 288 aa14.74□□□□□ -0.05
VRK3-208ENST00000594104 TMEM57Q8N5G2 664 aa14.73□□□□□ -0.05
VRK3-208ENST00000594104 MRPL50Q8N5N7 158 aaKnown RBP14.73□□□□□ -0.05
VRK3-208ENST00000594104 ZRANB1Q9UGI0 708 aa14.73□□□□□ -0.05
VRK3-208ENST00000594104 SSH2Q76I76 1423 aa14.73□□□□□ -0.05
VRK3-208ENST00000594104 BECN1Q14457 450 aa14.73□□□□□ -0.05
VRK3-208ENST00000594104 USP19O94966 1318 aa14.72□□□□□ -0.05
VRK3-208ENST00000594104 FBLN1P23142 703 aa14.72□□□□□ -0.05
VRK3-208ENST00000594104 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.72□□□□□ -0.05
VRK3-208ENST00000594104 DEKP35659 375 aaKnown RBP14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms