RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 FANCIQ9NVI1 1328 aa18.36■□□□□ 0.53
LIG3-205ENST00000585941 BCAR3O75815 825 aa18.35■□□□□ 0.53
LIG3-205ENST00000585941 ESCO1Q5FWF5 840 aa18.35■□□□□ 0.53
LIG3-205ENST00000585941 ARHGEF10O15013 1369 aa18.35■□□□□ 0.53
LIG3-205ENST00000585941 DLG5Q8TDM6 1919 aa18.35■□□□□ 0.53
LIG3-205ENST00000585941 PHACTR3Q96KR7 559 aa18.34■□□□□ 0.53
LIG3-205ENST00000585941 C19orf44Q9H6X5 657 aa18.34■□□□□ 0.53
LIG3-205ENST00000585941 PSME1Q06323 249 aa18.34■□□□□ 0.53
LIG3-205ENST00000585941 PAK3O75914 559 aaPredicted RBP18.33■□□□□ 0.52
LIG3-205ENST00000585941 AMPHP49418 695 aa18.33■□□□□ 0.52
LIG3-205ENST00000585941 HSP90AB2PQ58FF8 381 aa18.33■□□□□ 0.52
LIG3-205ENST00000585941 DCCP43146 1447 aa18.33■□□□□ 0.52
LIG3-205ENST00000585941 RTL1A6NKG5 1358 aa18.32■□□□□ 0.52
LIG3-205ENST00000585941 CANXP27824 592 aaKnown RBP18.32■□□□□ 0.52
LIG3-205ENST00000585941 C20orf194Q5TEA3 1177 aa18.32■□□□□ 0.52
LIG3-205ENST00000585941 RBM33Q96EV2 1170 aaKnown RBP18.32■□□□□ 0.52
LIG3-205ENST00000585941 AAMPQ13685 434 aa18.31■□□□□ 0.52
LIG3-205ENST00000585941 SULT6B1Q6IMI4 303 aa18.31■□□□□ 0.52
LIG3-205ENST00000585941 ZNF428Q96B54 188 aa18.31■□□□□ 0.52
LIG3-205ENST00000585941 GNAI1P63096 354 aa18.31■□□□□ 0.52
LIG3-205ENST00000585941 SOX12O15370 315 aa18.3■□□□□ 0.52
LIG3-205ENST00000585941 MS4A1P11836 297 aa18.3■□□□□ 0.52
LIG3-205ENST00000585941 IFT57Q9NWB7 429 aa18.3■□□□□ 0.52
LIG3-205ENST00000585941 EXOSC9Q06265 439 aaKnown RBP18.29■□□□□ 0.52
LIG3-205ENST00000585941 KCNH5Q8NCM2 988 aa18.29■□□□□ 0.52
LIG3-205ENST00000585941 TSR2Q969E8 191 aaKnown RBP18.29■□□□□ 0.52
LIG3-205ENST00000585941 KDRP35968 1356 aa18.29■□□□□ 0.52
LIG3-205ENST00000585941 C1orf167Q5SNV9 1468 aa18.29■□□□□ 0.52
LIG3-205ENST00000585941 PHRF1Q9P1Y6 1649 aaKnown RBP18.28■□□□□ 0.52
LIG3-205ENST00000585941 LTN1O94822 1766 aa18.28■□□□□ 0.52
LIG3-205ENST00000585941 IGSF1Q8N6C5 1336 aa18.28■□□□□ 0.52
LIG3-205ENST00000585941 STRCP1A6NGW2 1772 aa18.27■□□□□ 0.52
LIG3-205ENST00000585941 ATF3P18847 181 aa18.27■□□□□ 0.52
LIG3-205ENST00000585941 HOXC9P31274 260 aa18.27■□□□□ 0.52
LIG3-205ENST00000585941 NFAT5O94916 1531 aa18.26■□□□□ 0.51
LIG3-205ENST00000585941 AEBP1Q8IUX7 1158 aa18.26■□□□□ 0.51
LIG3-205ENST00000585941 TMEM94Q12767 1356 aa18.26■□□□□ 0.51
LIG3-205ENST00000585941 TRPM3Q9HCF6 1732 aaPredicted RBP18.26■□□□□ 0.51
LIG3-205ENST00000585941 ZNF853P0CG23 659 aa18.25■□□□□ 0.51
LIG3-205ENST00000585941 ALDH1L2Q3SY69 923 aa18.25■□□□□ 0.51
LIG3-205ENST00000585941 NUTM2GQ5VZR2 741 aa18.25■□□□□ 0.51
LIG3-205ENST00000585941 ORAI2Q96SN7 254 aa18.25■□□□□ 0.51
LIG3-205ENST00000585941 MST1RQ04912 1400 aa18.25■□□□□ 0.51
LIG3-205ENST00000585941 FRAT1Q92837 279 aaPredicted RBP18.25■□□□□ 0.51
LIG3-205ENST00000585941 CFAP44Q96MT7 982 aa18.25■□□□□ 0.51
LIG3-205ENST00000585941 LMTK3Q96Q04 1460 aa18.24■□□□□ 0.51
LIG3-205ENST00000585941 ZKSCAN2Q63HK3 967 aa18.24■□□□□ 0.51
LIG3-205ENST00000585941 CENPQQ7L2Z9 268 aaPredicted RBP18.24■□□□□ 0.51
LIG3-205ENST00000585941 SLIT3O75094 1523 aa18.23■□□□□ 0.51
LIG3-205ENST00000585941 FOXO3O43524 673 aa18.23■□□□□ 0.51
LIG3-205ENST00000585941 CADPS2Q86UW7 1296 aa18.23■□□□□ 0.51
LIG3-205ENST00000585941 IP6K1Q92551 441 aa18.23■□□□□ 0.51
LIG3-205ENST00000585941 EYA1Q99502 592 aa18.23■□□□□ 0.51
LIG3-205ENST00000585941 SMC4Q9NTJ3 1288 aa18.23■□□□□ 0.51
LIG3-205ENST00000585941 KIF16BQ96L93 1317 aa18.22■□□□□ 0.51
LIG3-205ENST00000585941 KDM4FA0A1W2PPD8 638 aa18.22■□□□□ 0.51
LIG3-205ENST00000585941 HSPA2P54652 639 aa18.22■□□□□ 0.51
LIG3-205ENST00000585941 BRPF1P55201 1214 aaPredicted RBP18.22■□□□□ 0.51
LIG3-205ENST00000585941 GAS2L2Q8NHY3 880 aa18.22■□□□□ 0.51
LIG3-205ENST00000585941 LAS1LQ9Y4W2 734 aaKnown RBP18.22■□□□□ 0.51
LIG3-205ENST00000585941 IPO8O15397 1037 aaKnown RBP18.21■□□□□ 0.51
LIG3-205ENST00000585941 HAP1P54257 671 aaPredicted RBP18.21■□□□□ 0.51
LIG3-205ENST00000585941 KRT28Q7Z3Y7 464 aa18.21■□□□□ 0.51
LIG3-205ENST00000585941 STRCQ7RTU9 1775 aa18.21■□□□□ 0.51
LIG3-205ENST00000585941 KDM2BQ8NHM5 1336 aa18.2■□□□□ 0.5
LIG3-205ENST00000585941 HTATSF1O43719 755 aaKnown RBP18.2■□□□□ 0.5
LIG3-205ENST00000585941 MSH6P52701 1360 aa18.2■□□□□ 0.5
LIG3-205ENST00000585941 USP19O94966 1318 aa18.19■□□□□ 0.5
LIG3-205ENST00000585941 TCERG1O14776 1098 aaKnown RBP18.19■□□□□ 0.5
LIG3-205ENST00000585941 PANK1Q8TE04 598 aa18.19■□□□□ 0.5
LIG3-205ENST00000585941 SSH1Q8WYL5 1049 aa18.19■□□□□ 0.5
LIG3-205ENST00000585941 THUMPD2Q9BTF0 503 aaKnown RBP18.19■□□□□ 0.5
LIG3-205ENST00000585941 BCL2L13Q9BXK5 485 aa18.19■□□□□ 0.5
LIG3-205ENST00000585941 MBIPQ9NS73 344 aa18.19■□□□□ 0.5
LIG3-205ENST00000585941 RBM19Q9Y4C8 960 aaKnown RBP18.19■□□□□ 0.5
LIG3-205ENST00000585941 ALS2Q96Q42 1657 aa18.19■□□□□ 0.5
LIG3-205ENST00000585941 CLUAP1Q96AJ1 413 aa18.18■□□□□ 0.5
LIG3-205ENST00000585941 COG6Q9Y2V7 657 aa18.18■□□□□ 0.5
LIG3-205ENST00000585941 FTSJ3Q8IY81 847 aaKnown RBP18.18■□□□□ 0.5
LIG3-205ENST00000585941 DZIP1LQ8IYY4 767 aaKnown RBP18.18■□□□□ 0.5
LIG3-205ENST00000585941 RTF1Q92541 710 aaKnown RBP18.18■□□□□ 0.5
LIG3-205ENST00000585941 GCP02774 474 aa18.17■□□□□ 0.5
LIG3-205ENST00000585941 FAM83GA6ND36 823 aa18.16■□□□□ 0.5
LIG3-205ENST00000585941 ATF7IPQ6VMQ6 1270 aa18.16■□□□□ 0.5
LIG3-205ENST00000585941 XIRP1Q702N8 1843 aaKnown RBP18.16■□□□□ 0.5
LIG3-205ENST00000585941 VAMP4O75379 141 aa18.15■□□□□ 0.5
LIG3-205ENST00000585941 MVPQ14764 893 aaKnown RBP18.15■□□□□ 0.5
LIG3-205ENST00000585941 MTHFSDQ2M296 383 aaKnown RBP18.15■□□□□ 0.5
LIG3-205ENST00000585941 NPHP3Q7Z494 1330 aa18.15■□□□□ 0.5
LIG3-205ENST00000585941 CHL1O00533 1208 aa18.15■□□□□ 0.5
LIG3-205ENST00000585941 ARHGEF25Q86VW2 580 aa18.15■□□□□ 0.5
LIG3-205ENST00000585941 KIAA0232Q92628 1395 aa18.14■□□□□ 0.49
LIG3-205ENST00000585941 RLBP1P12271 317 aa18.14■□□□□ 0.49
LIG3-205ENST00000585941 TWISTNBQ3B726 338 aaPredicted RBP18.14■□□□□ 0.49
LIG3-205ENST00000585941 ARHGAP45Q92619 1136 aa18.14■□□□□ 0.49
LIG3-205ENST00000585941 XPCQ01831 940 aaPredicted RBP18.13■□□□□ 0.49
LIG3-205ENST00000585941 DCTN1Q14203 1278 aa18.13■□□□□ 0.49
LIG3-205ENST00000585941 NOB1Q9ULX3 412 aaKnown RBP18.13■□□□□ 0.49
LIG3-205ENST00000585941 CRB1P82279 1406 aa18.13■□□□□ 0.49
LIG3-205ENST00000585941 TRIM27P14373 513 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms