RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 TRIM35Q9UPQ4 493 aa14.56□□□□□ -0.08
LIG3-204ENST00000585740 MS4A1P11836 297 aa14.55□□□□□ -0.08
LIG3-204ENST00000585740 CANXP27824 592 aaKnown RBP14.55□□□□□ -0.08
LIG3-204ENST00000585740 RARSP54136 660 aaKnown RBP14.55□□□□□ -0.08
LIG3-204ENST00000585740 ROBO1Q9Y6N7 1651 aa14.55□□□□□ -0.08
LIG3-204ENST00000585740 NUTM2FA1L443 756 aa14.54□□□□□ -0.08
LIG3-204ENST00000585740 TCERG1O14776 1098 aaKnown RBP14.54□□□□□ -0.08
LIG3-204ENST00000585740 BCAR3O75815 825 aa14.54□□□□□ -0.08
LIG3-204ENST00000585740 C20orf194Q5TEA3 1177 aa14.54□□□□□ -0.08
LIG3-204ENST00000585740 NWD1Q149M9 1564 aa14.54□□□□□ -0.08
LIG3-204ENST00000585740 DLG5Q8TDM6 1919 aa14.53□□□□□ -0.08
LIG3-204ENST00000585740 PIK3C2AO00443 1686 aa14.53□□□□□ -0.08
LIG3-204ENST00000585740 ADGRL3Q9HAR2 1447 aa14.53□□□□□ -0.08
LIG3-204ENST00000585740 FANCIQ9NVI1 1328 aa14.53□□□□□ -0.08
LIG3-204ENST00000585740 RRS1Q15050 365 aaKnown RBP14.53□□□□□ -0.08
LIG3-204ENST00000585740 CENPQQ7L2Z9 268 aaPredicted RBP14.53□□□□□ -0.08
LIG3-204ENST00000585740 PROSER2Q86WR7 435 aaPredicted RBP14.53□□□□□ -0.08
LIG3-204ENST00000585740 UPF1Q92900 1129 aaKnown RBP eCLIP14.53□□□□□ -0.08
LIG3-204ENST00000585740 KIF24Q5T7B8 1368 aa14.52□□□□□ -0.08
LIG3-204ENST00000585740 FBLN1P23142 703 aa14.52□□□□□ -0.09
LIG3-204ENST00000585740 PMFBP1Q8TBY8 1022 aa14.52□□□□□ -0.09
LIG3-204ENST00000585740 ZNF428Q96B54 188 aa14.52□□□□□ -0.09
LIG3-204ENST00000585740 RGPD1P0DJD0 1748 aa14.52□□□□□ -0.09
LIG3-204ENST00000585740 SBNO1A3KN83 1393 aa14.51□□□□□ -0.09
LIG3-204ENST00000585740 PEAK1Q9H792 1746 aa14.51□□□□□ -0.09
LIG3-204ENST00000585740 FLT4P35916 1363 aa14.5□□□□□ -0.09
LIG3-204ENST00000585740 JCADQ9P266 1359 aa14.5□□□□□ -0.09
LIG3-204ENST00000585740 HMOX1P09601 288 aa14.5□□□□□ -0.09
LIG3-204ENST00000585740 ARHGEF10O15013 1369 aa14.49□□□□□ -0.09
LIG3-204ENST00000585740 EIF4A2Q14240 407 aaKnown RBP14.49□□□□□ -0.09
LIG3-204ENST00000585740 KDM2BQ8NHM5 1336 aa14.48□□□□□ -0.09
LIG3-204ENST00000585740 GNAI1P63096 354 aa14.48□□□□□ -0.09
LIG3-204ENST00000585740 EXOSC9Q06265 439 aaKnown RBP14.48□□□□□ -0.09
LIG3-204ENST00000585740 IFT57Q9NWB7 429 aa14.48□□□□□ -0.09
LIG3-204ENST00000585740 SLAIN2Q9P270 581 aa14.48□□□□□ -0.09
LIG3-204ENST00000585740 PHF8Q9UPP1 1060 aa14.48□□□□□ -0.09
LIG3-204ENST00000585740 MARF1Q9Y4F3 1742 aaKnown RBP14.48□□□□□ -0.09
LIG3-204ENST00000585740 ALDH1L2Q3SY69 923 aa14.47□□□□□ -0.09
LIG3-204ENST00000585740 ZKSCAN2Q63HK3 967 aa14.47□□□□□ -0.09
LIG3-204ENST00000585740 MSH6P52701 1360 aa14.47□□□□□ -0.09
LIG3-204ENST00000585740 MEX3CQ5U5Q3 659 aaKnown RBP14.46□□□□□ -0.09
LIG3-204ENST00000585740 ZNF772Q68DY9 489 aaPredicted RBP14.46□□□□□ -0.09
LIG3-204ENST00000585740 FRAT1Q92837 279 aaPredicted RBP14.46□□□□□ -0.09
LIG3-204ENST00000585740 TSR2Q969E8 191 aaKnown RBP14.46□□□□□ -0.09
LIG3-204ENST00000585740 PHACTR3Q96KR7 559 aa14.46□□□□□ -0.09
LIG3-204ENST00000585740 MAP3K19Q56UN5 1328 aa14.45□□□□□ -0.1
LIG3-204ENST00000585740 IPO8O15397 1037 aaKnown RBP14.45□□□□□ -0.1
LIG3-204ENST00000585740 PHLPP1O60346 1717 aa14.45□□□□□ -0.1
LIG3-204ENST00000585740 NLRP6P59044 892 aa14.45□□□□□ -0.1
LIG3-204ENST00000585740 KIF1AQ12756 1690 aa14.45□□□□□ -0.1
LIG3-204ENST00000585740 RTL1A6NKG5 1358 aa14.45□□□□□ -0.1
LIG3-204ENST00000585740 KIF16BQ96L93 1317 aa14.44□□□□□ -0.1
LIG3-204ENST00000585740 AMPHP49418 695 aa14.44□□□□□ -0.1
LIG3-204ENST00000585740 SULT6B1Q6IMI4 303 aa14.44□□□□□ -0.1
LIG3-204ENST00000585740 CLUAP1Q96AJ1 413 aa14.44□□□□□ -0.1
LIG3-204ENST00000585740 SMC4Q9NTJ3 1288 aa14.44□□□□□ -0.1
LIG3-204ENST00000585740 LRP6O75581 1613 aa14.44□□□□□ -0.1
LIG3-204ENST00000585740 ZNF853P0CG23 659 aa14.43□□□□□ -0.1
LIG3-204ENST00000585740 HAP1P54257 671 aaPredicted RBP14.43□□□□□ -0.1
LIG3-204ENST00000585740 BRPF1P55201 1214 aaPredicted RBP14.43□□□□□ -0.1
LIG3-204ENST00000585740 PANK1Q8TE04 598 aa14.43□□□□□ -0.1
LIG3-204ENST00000585740 COG6Q9Y2V7 657 aa14.43□□□□□ -0.1
LIG3-204ENST00000585740 SPATA31A6Q5VVP1 1343 aa14.42□□□□□ -0.1
LIG3-204ENST00000585740 HSP90AB2PQ58FF8 381 aa14.42□□□□□ -0.1
LIG3-204ENST00000585740 FTSJ3Q8IY81 847 aaKnown RBP14.42□□□□□ -0.1
LIG3-204ENST00000585740 DZIP1LQ8IYY4 767 aaKnown RBP14.42□□□□□ -0.1
LIG3-204ENST00000585740 ABTB2Q8N961 1025 aa14.42□□□□□ -0.1
LIG3-204ENST00000585740 CFAP44Q96MT7 982 aa14.42□□□□□ -0.1
LIG3-204ENST00000585740 NCOA3Q9Y6Q9 1424 aa14.41□□□□□ -0.1
LIG3-204ENST00000585740 RXRBP28702 533 aa14.41□□□□□ -0.1
LIG3-204ENST00000585740 MVPQ14764 893 aaKnown RBP14.41□□□□□ -0.1
LIG3-204ENST00000585740 C14orf37Q86TY3 774 aa14.41□□□□□ -0.1
LIG3-204ENST00000585740 SSH1Q8WYL5 1049 aa14.41□□□□□ -0.1
LIG3-204ENST00000585740 KDRP35968 1356 aa14.41□□□□□ -0.1
LIG3-204ENST00000585740 LTN1O94822 1766 aa14.41□□□□□ -0.1
LIG3-204ENST00000585740 PHRF1Q9P1Y6 1649 aaKnown RBP14.41□□□□□ -0.1
LIG3-204ENST00000585740 IGSF1Q8N6C5 1336 aa14.41□□□□□ -0.1
LIG3-204ENST00000585740 SRCAPQ6ZRS2 3230 aa14.4□□□□□ -0.1
LIG3-204ENST00000585740 PAK3O75914 559 aaPredicted RBP14.4□□□□□ -0.1
LIG3-204ENST00000585740 KCNH5Q8NCM2 988 aa14.4□□□□□ -0.1
LIG3-204ENST00000585740 CHMP4BQ9H444 224 aaKnown RBP14.4□□□□□ -0.1
LIG3-204ENST00000585740 LAS1LQ9Y4W2 734 aaKnown RBP14.4□□□□□ -0.1
LIG3-204ENST00000585740 COL16A1Q07092 1604 aaPredicted RBP14.4□□□□□ -0.1
LIG3-204ENST00000585740 PSME1Q06323 249 aa14.39□□□□□ -0.11
LIG3-204ENST00000585740 ATF7IPQ6VMQ6 1270 aa14.39□□□□□ -0.11
LIG3-204ENST00000585740 GAS2L2Q8NHY3 880 aa14.39□□□□□ -0.11
LIG3-204ENST00000585740 BCL2L13Q9BXK5 485 aa14.39□□□□□ -0.11
LIG3-204ENST00000585740 SOX12O15370 315 aa14.38□□□□□ -0.11
LIG3-204ENST00000585740 HOXC9P31274 260 aa14.38□□□□□ -0.11
LIG3-204ENST00000585740 ESCO1Q5FWF5 840 aa14.38□□□□□ -0.11
LIG3-204ENST00000585740 AEBP1Q8IUX7 1158 aa14.38□□□□□ -0.11
LIG3-204ENST00000585740 ARHGAP45Q92619 1136 aa14.38□□□□□ -0.11
LIG3-204ENST00000585740 DDX19BQ9UMR2 479 aa14.38□□□□□ -0.11
LIG3-204ENST00000585740 NFAT5O94916 1531 aa14.37□□□□□ -0.11
LIG3-204ENST00000585740 HTATSF1O43719 755 aaKnown RBP14.37□□□□□ -0.11
LIG3-204ENST00000585740 VAMP4O75379 141 aa14.37□□□□□ -0.11
LIG3-204ENST00000585740 RWDD1Q9H446 243 aaPredicted RBP14.37□□□□□ -0.11
LIG3-204ENST00000585740 MBIPQ9NS73 344 aa14.37□□□□□ -0.11
LIG3-204ENST00000585740 DCCP43146 1447 aa14.37□□□□□ -0.11
LIG3-204ENST00000585740 RLBP1P12271 317 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms