RNA–Protein interactions for RNA: ENST00000566082.1

USB1-212, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 2

Gene USB1, Length 3,888 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-212ENST00000566082 CCDC9Q9Y3X0 531 aaKnown RBP12.71□□□□□ -0.37
USB1-212ENST00000566082 H3BQV1 296 aa12.71□□□□□ -0.38
USB1-212ENST00000566082 IFFO2Q5TF58 517 aa12.71□□□□□ -0.38
USB1-212ENST00000566082 C16orf71Q8IYS4 520 aaPredicted RBP12.71□□□□□ -0.38
USB1-212ENST00000566082 GNAI2P04899 355 aa12.7□□□□□ -0.38
USB1-212ENST00000566082 PRIM1P49642 420 aaKnown RBP12.7□□□□□ -0.38
USB1-212ENST00000566082 IL1RAPL2Q9NP60 686 aa12.7□□□□□ -0.38
USB1-212ENST00000566082 MIS18AQ9NYP9 233 aa12.7□□□□□ -0.38
USB1-212ENST00000566082 SHANK2Q9UPX8 1470 aa12.7□□□□□ -0.38
USB1-212ENST00000566082 UBTFL1P0CB47 393 aaPredicted RBP12.7□□□□□ -0.38
USB1-212ENST00000566082 WDR33Q9C0J8 1336 aaKnown RBP12.7□□□□□ -0.38
USB1-212ENST00000566082 A0A0U1RQG5 324 aaPredicted RBP12.7□□□□□ -0.38
USB1-212ENST00000566082 TSHZ3Q63HK5 1081 aa12.7□□□□□ -0.38
USB1-212ENST00000566082 RUFY2Q8WXA3 655 aa12.7□□□□□ -0.38
USB1-212ENST00000566082 EMILIN1Q9Y6C2 1016 aa12.7□□□□□ -0.38
USB1-212ENST00000566082 LRRCC1Q9C099 1032 aa12.69□□□□□ -0.38
USB1-212ENST00000566082 FBXW7Q969H0 707 aa12.69□□□□□ -0.38
USB1-212ENST00000566082 USP25Q9UHP3 1055 aa12.69□□□□□ -0.38
USB1-212ENST00000566082 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.69□□□□□ -0.38
USB1-212ENST00000566082 FAM83GA6ND36 823 aa12.69□□□□□ -0.38
USB1-212ENST00000566082 GNAI3P08754 354 aa12.69□□□□□ -0.38
USB1-212ENST00000566082 RBM25P49756 843 aaKnown RBP12.69□□□□□ -0.38
USB1-212ENST00000566082 GAS2L3Q86XJ1 694 aa12.69□□□□□ -0.38
USB1-212ENST00000566082 MCM10Q7L590 875 aa12.68□□□□□ -0.38
USB1-212ENST00000566082 ZGPATQ8N5A5 531 aaKnown RBP12.68□□□□□ -0.38
USB1-212ENST00000566082 FAM184AQ8NB25 1140 aa12.68□□□□□ -0.38
USB1-212ENST00000566082 C14orf93Q9H972 538 aaKnown RBP12.68□□□□□ -0.38
USB1-212ENST00000566082 IFIT2P09913 472 aaKnown RBP12.68□□□□□ -0.38
USB1-212ENST00000566082 FOSBP53539 338 aa12.68□□□□□ -0.38
USB1-212ENST00000566082 TTC22Q5TAA0 569 aa12.68□□□□□ -0.38
USB1-212ENST00000566082 LARP6Q9BRS8 491 aaKnown RBP12.68□□□□□ -0.38
USB1-212ENST00000566082 TRIM5Q9C035 493 aa12.68□□□□□ -0.38
USB1-212ENST00000566082 C9orf78Q9NZ63 289 aaPredicted RBP12.68□□□□□ -0.38
USB1-212ENST00000566082 EIF2AK4Q9P2K8 1649 aaKnown RBP12.68□□□□□ -0.38
USB1-212ENST00000566082 F6X3S4 739 aa12.67□□□□□ -0.38
USB1-212ENST00000566082 SASS6Q6UVJ0 657 aa12.67□□□□□ -0.38
USB1-212ENST00000566082 TSPYL6Q8N831 410 aa12.67□□□□□ -0.38
USB1-212ENST00000566082 MBIPQ9NS73 344 aa12.67□□□□□ -0.38
USB1-212ENST00000566082 ATAD2Q6PL18 1390 aa12.67□□□□□ -0.38
USB1-212ENST00000566082 NPC1L1Q9UHC9 1359 aa12.67□□□□□ -0.38
USB1-212ENST00000566082 SDSP20132 328 aa12.67□□□□□ -0.38
USB1-212ENST00000566082 FSD2A1L4K1 749 aa12.67□□□□□ -0.38
USB1-212ENST00000566082 SF3A1Q15459 793 aaKnown RBP12.66□□□□□ -0.38
USB1-212ENST00000566082 FYB1O15117 783 aa12.66□□□□□ -0.38
USB1-212ENST00000566082 ZNF830Q96NB3 372 aaPredicted RBP12.66□□□□□ -0.38
USB1-212ENST00000566082 IL16Q14005 1332 aa12.66□□□□□ -0.38
USB1-212ENST00000566082 OFD1O75665 1012 aa12.66□□□□□ -0.38
USB1-212ENST00000566082 CBX1P83916 185 aa12.65□□□□□ -0.38
USB1-212ENST00000566082 GNL2Q13823 731 aaKnown RBP12.65□□□□□ -0.38
USB1-212ENST00000566082 WAPLQ7Z5K2 1190 aa12.65□□□□□ -0.38
USB1-212ENST00000566082 RPGRIP1LQ68CZ1 1315 aa12.65□□□□□ -0.38
USB1-212ENST00000566082 TXNDC2Q86VQ3 553 aa12.65□□□□□ -0.38
USB1-212ENST00000566082 KIF3AQ9Y496 699 aa12.65□□□□□ -0.38
USB1-212ENST00000566082 NME9Q86XW9 330 aa12.65□□□□□ -0.38
USB1-212ENST00000566082 CNTROBQ8N137 903 aa12.65□□□□□ -0.38
USB1-212ENST00000566082 LETM1O95202 739 aaPredicted RBP12.64□□□□□ -0.39
USB1-212ENST00000566082 CCT4P50991 539 aaKnown RBP12.64□□□□□ -0.39
USB1-212ENST00000566082 LRSAM1Q6UWE0 723 aa12.64□□□□□ -0.39
USB1-212ENST00000566082 RBSNQ9H1K0 784 aa12.64□□□□□ -0.39
USB1-212ENST00000566082 RAPGEF3O95398 923 aa12.64□□□□□ -0.39
USB1-212ENST00000566082 ZHX1Q9UKY1 873 aaPredicted RBP12.64□□□□□ -0.39
USB1-212ENST00000566082 ZKSCAN5Q9Y2L8 839 aa12.64□□□□□ -0.39
USB1-212ENST00000566082 TEFQ10587 303 aa12.64□□□□□ -0.39
USB1-212ENST00000566082 NUTM1Q86Y26 1132 aa12.64□□□□□ -0.39
USB1-212ENST00000566082 C8orf58Q8NAV2 365 aa12.64□□□□□ -0.39
USB1-212ENST00000566082 DDX54Q8TDD1 881 aaKnown RBP12.64□□□□□ -0.39
USB1-212ENST00000566082 TMX3Q96JJ7 454 aa12.64□□□□□ -0.39
USB1-212ENST00000566082 TPD52L1Q16890 204 aaPredicted RBP12.63□□□□□ -0.39
USB1-212ENST00000566082 NUTM2GQ5VZR2 741 aa12.63□□□□□ -0.39
USB1-212ENST00000566082 DUOX2Q9NRD8 1548 aa12.63□□□□□ -0.39
USB1-212ENST00000566082 NPHP1O15259 732 aa12.63□□□□□ -0.39
USB1-212ENST00000566082 MX1P20591 662 aa12.63□□□□□ -0.39
USB1-212ENST00000566082 CWC27Q6UX04 472 aaKnown RBP12.63□□□□□ -0.39
USB1-212ENST00000566082 FERMT3Q86UX7 667 aa12.63□□□□□ -0.39
USB1-212ENST00000566082 MRPL50Q8N5N7 158 aaKnown RBP12.63□□□□□ -0.39
USB1-212ENST00000566082 MEIS3Q99687 375 aa12.63□□□□□ -0.39
USB1-212ENST00000566082 HDAC5Q9UQL6 1122 aa12.63□□□□□ -0.39
USB1-212ENST00000566082 TRAPPC8Q9Y2L5 1435 aa12.63□□□□□ -0.39
USB1-212ENST00000566082 VAMP4O75379 141 aa12.63□□□□□ -0.39
USB1-212ENST00000566082 CCDC192P0DO97 292 aa12.63□□□□□ -0.39
USB1-212ENST00000566082 CLASRPQ8N2M8 674 aaKnown RBP12.63□□□□□ -0.39
USB1-212ENST00000566082 CHMP4AQ9BY43 222 aa12.63□□□□□ -0.39
USB1-212ENST00000566082 TRIM35Q9UPQ4 493 aa12.63□□□□□ -0.39
USB1-212ENST00000566082 WDR7Q9Y4E6 1490 aa12.63□□□□□ -0.39
USB1-212ENST00000566082 A0A0G2JS52 829 aa12.63□□□□□ -0.39
USB1-212ENST00000566082 ZBTB7BO15156 539 aaPredicted RBP12.63□□□□□ -0.39
USB1-212ENST00000566082 HCLS1P14317 486 aaPredicted RBP12.63□□□□□ -0.39
USB1-212ENST00000566082 CCDC30Q5VVM6 783 aa12.63□□□□□ -0.39
USB1-212ENST00000566082 NSD2O96028 1365 aa12.62□□□□□ -0.39
USB1-212ENST00000566082 TPM4P67936 248 aa12.62□□□□□ -0.39
USB1-212ENST00000566082 PLEKHM2Q8IWE5 1019 aa12.62□□□□□ -0.39
USB1-212ENST00000566082 CEBPZQ03701 1054 aaKnown RBP12.62□□□□□ -0.39
USB1-212ENST00000566082 OTUD7AQ8TE49 926 aaPredicted RBP12.62□□□□□ -0.39
USB1-212ENST00000566082 PHACTR3Q96KR7 559 aa12.62□□□□□ -0.39
USB1-212ENST00000566082 ANKRD36BQ8N2N9 1353 aa12.62□□□□□ -0.39
USB1-212ENST00000566082 IDI1Q13907 227 aa12.62□□□□□ -0.39
USB1-212ENST00000566082 RNF20Q5VTR2 975 aa12.62□□□□□ -0.39
USB1-212ENST00000566082 ARHGAP45Q92619 1136 aa12.62□□□□□ -0.39
USB1-212ENST00000566082 PDCL2Q8N4E4 241 aa12.61□□□□□ -0.39
USB1-212ENST00000566082 ADGBQ8N7X0 1667 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms