RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 DUSP27Q5VZP5 1158 aa11.51□□□□□ -0.57
VPS39-205ENST00000562258 CFAP74Q9C0B2 1584 aa11.51□□□□□ -0.57
VPS39-205ENST00000562258 ABCC11Q96J66 1382 aa11.5□□□□□ -0.57
VPS39-205ENST00000562258 G3BP1Q13283 466 aaKnown RBP eCLIP11.5□□□□□ -0.57
VPS39-205ENST00000562258 IL2RBP14784 551 aa11.5□□□□□ -0.57
VPS39-205ENST00000562258 ROBO2Q9HCK4 1378 aa11.5□□□□□ -0.57
VPS39-205ENST00000562258 GPTP24298 496 aa11.49□□□□□ -0.57
VPS39-205ENST00000562258 ZBTB3Q9H5J0 574 aa11.49□□□□□ -0.57
VPS39-205ENST00000562258 ZNF219Q9P2Y4 722 aaPredicted RBP11.49□□□□□ -0.57
VPS39-205ENST00000562258 KIF16BQ96L93 1317 aa11.49□□□□□ -0.57
VPS39-205ENST00000562258 EFCAB6Q5THR3 1501 aa11.49□□□□□ -0.57
VPS39-205ENST00000562258 NOB1Q9ULX3 412 aaKnown RBP11.49□□□□□ -0.57
VPS39-205ENST00000562258 ERVK-7P63135 1459 aa11.49□□□□□ -0.57
VPS39-205ENST00000562258 NFATC2IPQ8NCF5 419 aa11.49□□□□□ -0.57
VPS39-205ENST00000562258 DDX19BQ9UMR2 479 aa11.49□□□□□ -0.57
VPS39-205ENST00000562258 SPRYD3Q8NCJ5 442 aa11.49□□□□□ -0.57
VPS39-205ENST00000562258 SIL1Q9H173 461 aa11.49□□□□□ -0.57
VPS39-205ENST00000562258 GPATCH3Q96I76 525 aa11.48□□□□□ -0.57
VPS39-205ENST00000562258 RALGAPBQ86X10 1494 aa11.48□□□□□ -0.57
VPS39-205ENST00000562258 HOXC9P31274 260 aa11.48□□□□□ -0.57
VPS39-205ENST00000562258 PRDM15P57071 1507 aaPredicted RBP11.48□□□□□ -0.57
VPS39-205ENST00000562258 ZPR1O75312 459 aa11.48□□□□□ -0.57
VPS39-205ENST00000562258 SURF6O75683 361 aaKnown RBP11.48□□□□□ -0.57
VPS39-205ENST00000562258 F6X3S4 739 aa11.47□□□□□ -0.57
VPS39-205ENST00000562258 PHACTR3Q96KR7 559 aa11.47□□□□□ -0.57
VPS39-205ENST00000562258 LNPKQ9C0E8 428 aa11.47□□□□□ -0.57
VPS39-205ENST00000562258 KDM5DQ9BY66 1539 aa11.47□□□□□ -0.57
VPS39-205ENST00000562258 CDC42BPAQ5VT25 1732 aa11.47□□□□□ -0.57
VPS39-205ENST00000562258 KDM4FA0A1W2PPD8 638 aa11.47□□□□□ -0.57
VPS39-205ENST00000562258 DCAF8L1A6NGE4 600 aa11.46□□□□□ -0.57
VPS39-205ENST00000562258 IFIT2P09913 472 aaKnown RBP11.46□□□□□ -0.57
VPS39-205ENST00000562258 IP6K1Q92551 441 aa11.46□□□□□ -0.57
VPS39-205ENST00000562258 PLEKHG1Q9ULL1 1385 aa11.46□□□□□ -0.57
VPS39-205ENST00000562258 JARID2Q92833 1246 aaPredicted RBP11.46□□□□□ -0.57
VPS39-205ENST00000562258 MTHFSDQ2M296 383 aaKnown RBP11.46□□□□□ -0.58
VPS39-205ENST00000562258 PLEKHG3A1L390 1219 aa11.45□□□□□ -0.58
VPS39-205ENST00000562258 NOL8Q76FK4 1167 aaKnown RBP11.45□□□□□ -0.58
VPS39-205ENST00000562258 AK7Q96M32 723 aa11.45□□□□□ -0.58
VPS39-205ENST00000562258 SRCIN1Q9C0H9 1055 aa11.45□□□□□ -0.58
VPS39-205ENST00000562258 ATP5J2-PTCD1G3V325 749 aa11.45□□□□□ -0.58
VPS39-205ENST00000562258 MFAP1P55081 439 aaKnown RBP11.45□□□□□ -0.58
VPS39-205ENST00000562258 WDR63Q8IWG1 891 aa11.45□□□□□ -0.58
VPS39-205ENST00000562258 FMNL2Q96PY5 1086 aa11.45□□□□□ -0.58
VPS39-205ENST00000562258 NINLQ9Y2I6 1382 aa11.45□□□□□ -0.58
VPS39-205ENST00000562258 RAD21O60216 631 aa11.44□□□□□ -0.58
VPS39-205ENST00000562258 ATP6V1AP38606 617 aa11.44□□□□□ -0.58
VPS39-205ENST00000562258 NBPF6Q5VWK0 638 aa11.44□□□□□ -0.58
VPS39-205ENST00000562258 NBPF4Q96M43 638 aa11.44□□□□□ -0.58
VPS39-205ENST00000562258 CNNM1Q9NRU3 951 aa11.44□□□□□ -0.58
VPS39-205ENST00000562258 TRPM2O94759 1503 aa11.44□□□□□ -0.58
VPS39-205ENST00000562258 LARP1Q6PKG0 1096 aaKnown RBP11.44□□□□□ -0.58
VPS39-205ENST00000562258 ABCC3O15438 1527 aa11.44□□□□□ -0.58
VPS39-205ENST00000562258 FLT4P35916 1363 aa11.44□□□□□ -0.58
VPS39-205ENST00000562258 PRR36Q9H6K5 1346 aa11.44□□□□□ -0.58
VPS39-205ENST00000562258 BRINP3Q76B58 766 aa11.44□□□□□ -0.58
VPS39-205ENST00000562258 QTRT2Q9H974 415 aaKnown RBP11.44□□□□□ -0.58
VPS39-205ENST00000562258 PER1O15534 1290 aaPredicted RBP11.43□□□□□ -0.58
VPS39-205ENST00000562258 APPP05067 770 aa11.43□□□□□ -0.58
VPS39-205ENST00000562258 KRT24Q2M2I5 525 aa11.43□□□□□ -0.58
VPS39-205ENST00000562258 PLA2R1Q13018 1463 aa11.43□□□□□ -0.58
VPS39-205ENST00000562258 NBR1Q14596 966 aa11.43□□□□□ -0.58
VPS39-205ENST00000562258 MPHOSPH8Q99549 860 aa11.43□□□□□ -0.58
VPS39-205ENST00000562258 PRIM1P49642 420 aaKnown RBP11.42□□□□□ -0.58
VPS39-205ENST00000562258 BECN1Q14457 450 aa11.42□□□□□ -0.58
VPS39-205ENST00000562258 NLRP1Q9C000 1473 aa11.42□□□□□ -0.58
VPS39-205ENST00000562258 ABCA9Q8IUA7 1624 aa11.42□□□□□ -0.58
VPS39-205ENST00000562258 SSH1Q8WYL5 1049 aa11.42□□□□□ -0.58
VPS39-205ENST00000562258 GNAI3P08754 354 aa11.42□□□□□ -0.58
VPS39-205ENST00000562258 MYD88Q99836 296 aa11.42□□□□□ -0.58
VPS39-205ENST00000562258 TFCP2L1Q9NZI6 479 aa11.42□□□□□ -0.58
VPS39-205ENST00000562258 TBC1D2BQ9UPU7 963 aa11.42□□□□□ -0.58
VPS39-205ENST00000562258 ARAP3Q8WWN8 1544 aa11.42□□□□□ -0.58
VPS39-205ENST00000562258 RFC4P35249 363 aa11.42□□□□□ -0.58
VPS39-205ENST00000562258 CCDC27Q2M243 656 aa11.41□□□□□ -0.58
VPS39-205ENST00000562258 SAMD1Q6SPF0 538 aaPredicted RBP11.41□□□□□ -0.58
VPS39-205ENST00000562258 CERKQ8TCT0 537 aa11.41□□□□□ -0.58
VPS39-205ENST00000562258 SPINK5Q9NQ38 1064 aaPredicted RBP11.41□□□□□ -0.58
VPS39-205ENST00000562258 TRMT112Q9UI30 125 aaKnown RBP11.41□□□□□ -0.58
VPS39-205ENST00000562258 SHROOM2Q13796 1616 aa11.41□□□□□ -0.58
VPS39-205ENST00000562258 NSD2O96028 1365 aa11.4□□□□□ -0.58
VPS39-205ENST00000562258 MCCP23508 829 aa11.4□□□□□ -0.58
VPS39-205ENST00000562258 ATF7IPQ6VMQ6 1270 aa11.4□□□□□ -0.58
VPS39-205ENST00000562258 PUS7Q96PZ0 661 aaKnown RBP11.4□□□□□ -0.58
VPS39-205ENST00000562258 SPATA31E1Q6ZUB1 1445 aa11.4□□□□□ -0.58
VPS39-205ENST00000562258 CCDC57Q2TAC2 916 aa11.4□□□□□ -0.58
VPS39-205ENST00000562258 MBIPQ9NS73 344 aa11.4□□□□□ -0.58
VPS39-205ENST00000562258 KIAA0232Q92628 1395 aa11.4□□□□□ -0.58
VPS39-205ENST00000562258 SLFN5Q08AF3 891 aa11.4□□□□□ -0.58
VPS39-205ENST00000562258 CDC42BPBQ9Y5S2 1711 aa11.39□□□□□ -0.59
VPS39-205ENST00000562258 FAM161AQ3B820 660 aa11.39□□□□□ -0.59
VPS39-205ENST00000562258 SRGAP3O43295 1099 aa11.39□□□□□ -0.59
VPS39-205ENST00000562258 LGR6Q9HBX8 967 aa11.39□□□□□ -0.59
VPS39-205ENST00000562258 A2ML1A8K2U0 1454 aa11.39□□□□□ -0.59
VPS39-205ENST00000562258 NCLP19338 710 aaKnown RBP11.39□□□□□ -0.59
VPS39-205ENST00000562258 CLASRPQ8N2M8 674 aaKnown RBP11.39□□□□□ -0.59
VPS39-205ENST00000562258 CFAP44Q96MT7 982 aa11.39□□□□□ -0.59
VPS39-205ENST00000562258 DBF4Q9UBU7 674 aaPredicted RBP11.39□□□□□ -0.59
VPS39-205ENST00000562258 FANCIQ9NVI1 1328 aa11.39□□□□□ -0.59
VPS39-205ENST00000562258 PI4KAP2A4QPH2 592 aa11.38□□□□□ -0.59
VPS39-205ENST00000562258 SNRPA1P09661 255 aaKnown RBP11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms