RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 PANK1Q8TE04 598 aa6.93□□□□□ -1.3
VPS13C-209ENST00000560637 SMG6Q86US8 1419 aaKnown RBP6.93□□□□□ -1.3
VPS13C-209ENST00000560637 DEPDC5O75140 1603 aa6.93□□□□□ -1.3
VPS13C-209ENST00000560637 FAM98CQ17RN3 349 aaKnown RBP6.93□□□□□ -1.3
VPS13C-209ENST00000560637 GAS2L2Q8NHY3 880 aa6.93□□□□□ -1.3
VPS13C-209ENST00000560637 PHACTR3Q96KR7 559 aa6.93□□□□□ -1.3
VPS13C-209ENST00000560637 E9PSI1 815 aa6.92□□□□□ -1.3
VPS13C-209ENST00000560637 EYA1Q99502 592 aa6.92□□□□□ -1.3
VPS13C-209ENST00000560637 CLTCL1P53675 1640 aa6.92□□□□□ -1.3
VPS13C-209ENST00000560637 EXOC5O00471 708 aa6.92□□□□□ -1.3
VPS13C-209ENST00000560637 KRT24Q2M2I5 525 aa6.92□□□□□ -1.3
VPS13C-209ENST00000560637 BICDL1Q6ZP65 573 aa6.92□□□□□ -1.3
VPS13C-209ENST00000560637 BRINP3Q76B58 766 aa6.92□□□□□ -1.3
VPS13C-209ENST00000560637 EXOC6Q8TAG9 804 aa6.92□□□□□ -1.3
VPS13C-209ENST00000560637 CCDC85AQ96PX6 553 aaPredicted RBP6.92□□□□□ -1.3
VPS13C-209ENST00000560637 TRPM2O94759 1503 aa6.92□□□□□ -1.3
VPS13C-209ENST00000560637 POLR1AO95602 1720 aaPredicted RBP6.92□□□□□ -1.3
VPS13C-209ENST00000560637 CAMSAP1Q5T5Y3 1602 aa6.92□□□□□ -1.3
VPS13C-209ENST00000560637 BTBD11A6QL63 1104 aa6.91□□□□□ -1.3
VPS13C-209ENST00000560637 SPG7Q9UQ90 795 aa6.91□□□□□ -1.3
VPS13C-209ENST00000560637 KDM5AP29375 1690 aaKnown RBP6.91□□□□□ -1.3
VPS13C-209ENST00000560637 PIK3C2GO75747 1445 aa6.91□□□□□ -1.3
VPS13C-209ENST00000560637 SYNMO15061 1565 aa6.91□□□□□ -1.3
VPS13C-209ENST00000560637 IPO8O15397 1037 aaKnown RBP6.91□□□□□ -1.3
VPS13C-209ENST00000560637 GNAI1P63096 354 aa6.91□□□□□ -1.3
VPS13C-209ENST00000560637 HDGFL1Q5TGJ6 251 aa6.91□□□□□ -1.3
VPS13C-209ENST00000560637 VSIG10Q8N0Z9 540 aa6.91□□□□□ -1.3
VPS13C-209ENST00000560637 C1orf115Q9H7X2 142 aa6.91□□□□□ -1.3
VPS13C-209ENST00000560637 ZBED9Q6R2W3 1325 aa6.91□□□□□ -1.3
VPS13C-209ENST00000560637 LTBP4Q8N2S1 1624 aa6.91□□□□□ -1.3
VPS13C-209ENST00000560637 TWISTNBQ3B726 338 aaPredicted RBP6.91□□□□□ -1.3
VPS13C-209ENST00000560637 WWC1Q8IX03 1113 aa6.91□□□□□ -1.3
VPS13C-209ENST00000560637 CRBNQ96SW2 442 aa6.91□□□□□ -1.3
VPS13C-209ENST00000560637 ARHGAP31Q2M1Z3 1444 aa6.91□□□□□ -1.3
VPS13C-209ENST00000560637 FCHSD2O94868 740 aa6.9□□□□□ -1.3
VPS13C-209ENST00000560637 HOXC9P31274 260 aa6.9□□□□□ -1.3
VPS13C-209ENST00000560637 TAF7LQ5H9L4 462 aa6.9□□□□□ -1.3
VPS13C-209ENST00000560637 GNAT3A8MTJ3 354 aa6.9□□□□□ -1.3
VPS13C-209ENST00000560637 SLC4A2P04920 1241 aa6.9□□□□□ -1.3
VPS13C-209ENST00000560637 NFE2L2Q16236 605 aa6.9□□□□□ -1.3
VPS13C-209ENST00000560637 NBPF6Q5VWK0 638 aa6.9□□□□□ -1.3
VPS13C-209ENST00000560637 RIC3Q7Z5B4 369 aa6.9□□□□□ -1.3
VPS13C-209ENST00000560637 NBPF4Q96M43 638 aa6.9□□□□□ -1.3
VPS13C-209ENST00000560637 LARP1Q6PKG0 1096 aaKnown RBP6.9□□□□□ -1.31
VPS13C-209ENST00000560637 HOMEZQ8IX15 550 aa6.9□□□□□ -1.31
VPS13C-209ENST00000560637 C9orf78Q9NZ63 289 aaPredicted RBP6.89□□□□□ -1.31
VPS13C-209ENST00000560637 MED14O60244 1454 aa6.89□□□□□ -1.31
VPS13C-209ENST00000560637 TTC21AQ8NDW8 1320 aa6.89□□□□□ -1.31
VPS13C-209ENST00000560637 KCNQ4P56696 695 aa6.89□□□□□ -1.31
VPS13C-209ENST00000560637 SF3B2Q13435 895 aaKnown RBP6.89□□□□□ -1.31
VPS13C-209ENST00000560637 MTHFSDQ2M296 383 aaKnown RBP6.89□□□□□ -1.31
VPS13C-209ENST00000560637 JARID2Q92833 1246 aaPredicted RBP6.89□□□□□ -1.31
VPS13C-209ENST00000560637 TET3O43151 1660 aa6.89□□□□□ -1.31
VPS13C-209ENST00000560637 E9PCH4 1651 aa6.89□□□□□ -1.31
VPS13C-209ENST00000560637 PLEKHG3A1L390 1219 aa6.89□□□□□ -1.31
VPS13C-209ENST00000560637 PHF14O94880 888 aa6.89□□□□□ -1.31
VPS13C-209ENST00000560637 DDB1Q16531 1140 aa6.89□□□□□ -1.31
VPS13C-209ENST00000560637 TMOD3Q9NYL9 352 aa6.89□□□□□ -1.31
VPS13C-209ENST00000560637 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.89□□□□□ -1.31
VPS13C-209ENST00000560637 SPATA31D1Q6ZQQ2 1576 aa6.89□□□□□ -1.31
VPS13C-209ENST00000560637 USP21Q9UK80 565 aa6.88□□□□□ -1.31
VPS13C-209ENST00000560637 IQGAP3Q86VI3 1631 aa6.88□□□□□ -1.31
VPS13C-209ENST00000560637 KIAA0232Q92628 1395 aa6.88□□□□□ -1.31
VPS13C-209ENST00000560637 F6X3S4 739 aa6.88□□□□□ -1.31
VPS13C-209ENST00000560637 ZKSCAN2Q63HK3 967 aa6.88□□□□□ -1.31
VPS13C-209ENST00000560637 NFATC2IPQ8NCF5 419 aa6.88□□□□□ -1.31
VPS13C-209ENST00000560637 ZCRB1Q8TBF4 217 aaKnown RBP6.88□□□□□ -1.31
VPS13C-209ENST00000560637 CROCC2H7BZ55 1655 aa6.87□□□□□ -1.31
VPS13C-209ENST00000560637 HSPA1LP34931 641 aa6.87□□□□□ -1.31
VPS13C-209ENST00000560637 RRP1P56182 461 aaKnown RBP6.87□□□□□ -1.31
VPS13C-209ENST00000560637 LGR6Q9HBX8 967 aa6.87□□□□□ -1.31
VPS13C-209ENST00000560637 PPP4R2Q9NY27 417 aa6.87□□□□□ -1.31
VPS13C-209ENST00000560637 NEXNQ0ZGT2 675 aa6.87□□□□□ -1.31
VPS13C-209ENST00000560637 IP6K1Q92551 441 aa6.87□□□□□ -1.31
VPS13C-209ENST00000560637 NOB1Q9ULX3 412 aaKnown RBP6.87□□□□□ -1.31
VPS13C-209ENST00000560637 LMTK2Q8IWU2 1503 aa6.87□□□□□ -1.31
VPS13C-209ENST00000560637 DUSP27Q5VZP5 1158 aa6.86□□□□□ -1.31
VPS13C-209ENST00000560637 ZBTB3Q9H5J0 574 aa6.86□□□□□ -1.31
VPS13C-209ENST00000560637 AXIN2Q9Y2T1 843 aa6.86□□□□□ -1.31
VPS13C-209ENST00000560637 IL2RBP14784 551 aa6.86□□□□□ -1.31
VPS13C-209ENST00000560637 GPTP24298 496 aa6.86□□□□□ -1.31
VPS13C-209ENST00000560637 DZIP1LQ8IYY4 767 aaKnown RBP6.86□□□□□ -1.31
VPS13C-209ENST00000560637 IFNL2Q8IZJ0 200 aa6.86□□□□□ -1.31
VPS13C-209ENST00000560637 SPINK5Q9NQ38 1064 aaPredicted RBP6.86□□□□□ -1.31
VPS13C-209ENST00000560637 UNC13BO14795 1591 aa6.86□□□□□ -1.31
VPS13C-209ENST00000560637 FLT4P35916 1363 aa6.86□□□□□ -1.31
VPS13C-209ENST00000560637 FRAT2O75474 233 aaPredicted RBP6.86□□□□□ -1.31
VPS13C-209ENST00000560637 GORABQ5T7V8 394 aa6.86□□□□□ -1.31
VPS13C-209ENST00000560637 SKAP1Q86WV1 359 aa6.86□□□□□ -1.31
VPS13C-209ENST00000560637 KIF1BO60333 1816 aa6.85□□□□□ -1.31
VPS13C-209ENST00000560637 C20orf194Q5TEA3 1177 aa6.85□□□□□ -1.31
VPS13C-209ENST00000560637 BCL11BQ9C0K0 894 aaPredicted RBP6.85□□□□□ -1.31
VPS13C-209ENST00000560637 ADAMTS13Q76LX8 1427 aa6.85□□□□□ -1.31
VPS13C-209ENST00000560637 HSP90AA1P07900 732 aaKnown RBP6.85□□□□□ -1.31
VPS13C-209ENST00000560637 MS4A1P11836 297 aa6.85□□□□□ -1.31
VPS13C-209ENST00000560637 ZNF219Q9P2Y4 722 aaPredicted RBP6.85□□□□□ -1.31
VPS13C-209ENST00000560637 PTPRUQ92729 1446 aa6.85□□□□□ -1.31
VPS13C-209ENST00000560637 ASXL1Q8IXJ9 1541 aa6.85□□□□□ -1.31
VPS13C-209ENST00000560637 ATP5J2-PTCD1G3V325 749 aa6.85□□□□□ -1.31
VPS13C-209ENST00000560637 TAF7Q15545 349 aaPredicted RBP6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms