RNA–Protein interactions for RNA: ENST00000560483.1

LRRC28-219, Transcript of leucine rich repeat containing 28, humanhuman

TSL 5

Gene LRRC28, Length 535 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-219ENST00000560483 PMFBP1Q8TBY8 1022 aa11.31□□□□□ -0.6
LRRC28-219ENST00000560483 LRRC59Q96AG4 307 aaKnown RBP11.31□□□□□ -0.6
LRRC28-219ENST00000560483 FMN2Q9NZ56 1722 aa11.31□□□□□ -0.6
LRRC28-219ENST00000560483 NPHP3Q7Z494 1330 aa11.31□□□□□ -0.6
LRRC28-219ENST00000560483 RGPD8O14715 1765 aaPredicted RBP11.31□□□□□ -0.6
LRRC28-219ENST00000560483 WASLO00401 505 aaPredicted RBP11.3□□□□□ -0.6
LRRC28-219ENST00000560483 PSME1Q06323 249 aa11.3□□□□□ -0.6
LRRC28-219ENST00000560483 PHF8Q9UPP1 1060 aa11.3□□□□□ -0.6
LRRC28-219ENST00000560483 CLSPNQ9HAW4 1339 aa11.3□□□□□ -0.6
LRRC28-219ENST00000560483 AHDC1Q5TGY3 1603 aaPredicted RBP11.29□□□□□ -0.6
LRRC28-219ENST00000560483 HAP1P54257 671 aaPredicted RBP11.29□□□□□ -0.6
LRRC28-219ENST00000560483 DOK7Q18PE1 504 aa11.29□□□□□ -0.6
LRRC28-219ENST00000560483 NGDNQ8NEJ9 315 aaKnown RBP11.29□□□□□ -0.6
LRRC28-219ENST00000560483 CDK19Q9BWU1 502 aa11.29□□□□□ -0.6
LRRC28-219ENST00000560483 COL16A1Q07092 1604 aaPredicted RBP11.28□□□□□ -0.6
LRRC28-219ENST00000560483 QRICH2Q9H0J4 1663 aa11.28□□□□□ -0.6
LRRC28-219ENST00000560483 MED1Q15648 1581 aaPredicted RBP11.28□□□□□ -0.6
LRRC28-219ENST00000560483 NHSL1Q5SYE7 1610 aa11.27□□□□□ -0.6
LRRC28-219ENST00000560483 KRT28Q7Z3Y7 464 aa11.27□□□□□ -0.61
LRRC28-219ENST00000560483 NUDT16Q96DE0 195 aaKnown RBP11.26□□□□□ -0.61
LRRC28-219ENST00000560483 EVC2Q86UK5 1308 aa11.26□□□□□ -0.61
LRRC28-219ENST00000560483 KIF1AQ12756 1690 aa11.26□□□□□ -0.61
LRRC28-219ENST00000560483 GPRASP1Q5JY77 1395 aa11.26□□□□□ -0.61
LRRC28-219ENST00000560483 TULP4Q9NRJ4 1543 aa11.25□□□□□ -0.61
LRRC28-219ENST00000560483 ADGRB2O60241 1585 aa11.25□□□□□ -0.61
LRRC28-219ENST00000560483 ADAMTS2O95450 1211 aa11.25□□□□□ -0.61
LRRC28-219ENST00000560483 SPATA31A6Q5VVP1 1343 aa11.25□□□□□ -0.61
LRRC28-219ENST00000560483 ANKARQ7Z5J8 1434 aa11.25□□□□□ -0.61
LRRC28-219ENST00000560483 RALGAPBQ86X10 1494 aa11.25□□□□□ -0.61
LRRC28-219ENST00000560483 ITSN1Q15811 1721 aa11.24□□□□□ -0.61
LRRC28-219ENST00000560483 GPR153Q6NV75 609 aa11.24□□□□□ -0.61
LRRC28-219ENST00000560483 KHSRPQ92945 711 aaKnown RBP eCLIP11.24□□□□□ -0.61
LRRC28-219ENST00000560483 RNF166Q96A37 237 aaPredicted RBP11.24□□□□□ -0.61
LRRC28-219ENST00000560483 TIMELESSQ9UNS1 1208 aa11.24□□□□□ -0.61
LRRC28-219ENST00000560483 C8orf37Q96NL8 207 aa11.23□□□□□ -0.61
LRRC28-219ENST00000560483 SOS2Q07890 1332 aaPredicted RBP11.23□□□□□ -0.61
LRRC28-219ENST00000560483 PRR36Q9H6K5 1346 aa11.23□□□□□ -0.61
LRRC28-219ENST00000560483 SHPRHQ149N8 1683 aa11.23□□□□□ -0.61
LRRC28-219ENST00000560483 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.22□□□□□ -0.61
LRRC28-219ENST00000560483 PNPLA6Q8IY17 1366 aa11.22□□□□□ -0.61
LRRC28-219ENST00000560483 TMC1Q8TDI8 760 aa11.22□□□□□ -0.61
LRRC28-219ENST00000560483 ZFP91Q96JP5 570 aaPredicted RBP11.22□□□□□ -0.61
LRRC28-219ENST00000560483 USP32Q8NFA0 1604 aa11.21□□□□□ -0.61
LRRC28-219ENST00000560483 POLR3GLQ9BT43 218 aa11.21□□□□□ -0.61
LRRC28-219ENST00000560483 PPIP5K1Q6PFW1 1433 aa11.2□□□□□ -0.62
LRRC28-219ENST00000560483 ST20-MTHFSA0A0A6YYL1 179 aa11.2□□□□□ -0.62
LRRC28-219ENST00000560483 NGLY1Q96IV0 654 aa11.2□□□□□ -0.62
LRRC28-219ENST00000560483 CABP1Q9NZU7 370 aa11.2□□□□□ -0.62
LRRC28-219ENST00000560483 ATP7BP35670 1465 aa11.19□□□□□ -0.62
LRRC28-219ENST00000560483 PXDNQ92626 1479 aa11.19□□□□□ -0.62
LRRC28-219ENST00000560483 USP47Q96K76 1375 aa11.19□□□□□ -0.62
LRRC28-219ENST00000560483 ACEP12821 1306 aa11.19□□□□□ -0.62
LRRC28-219ENST00000560483 NUTM2GQ5VZR2 741 aa11.19□□□□□ -0.62
LRRC28-219ENST00000560483 TNS3Q68CZ2 1445 aa11.18□□□□□ -0.62
LRRC28-219ENST00000560483 SPATA31A3Q5VYP0 1347 aa11.18□□□□□ -0.62
LRRC28-219ENST00000560483 CABLES1Q8TDN4 633 aa11.18□□□□□ -0.62
LRRC28-219ENST00000560483 ARHGEF10O15013 1369 aa11.17□□□□□ -0.62
LRRC28-219ENST00000560483 LRP6O75581 1613 aa11.17□□□□□ -0.62
LRRC28-219ENST00000560483 ZBTB7CA1YPR0 619 aa11.17□□□□□ -0.62
LRRC28-219ENST00000560483 ARSIQ5FYB1 569 aa11.17□□□□□ -0.62
LRRC28-219ENST00000560483 ZNF772Q68DY9 489 aaPredicted RBP11.17□□□□□ -0.62
LRRC28-219ENST00000560483 ABTB2Q8N961 1025 aa11.17□□□□□ -0.62
LRRC28-219ENST00000560483 ATAD2Q6PL18 1390 aa11.16□□□□□ -0.62
LRRC28-219ENST00000560483 AFF2P51816 1311 aa11.16□□□□□ -0.62
LRRC28-219ENST00000560483 SLC24A1O60721 1099 aa11.16□□□□□ -0.62
LRRC28-219ENST00000560483 TMF1P82094 1093 aa11.16□□□□□ -0.62
LRRC28-219ENST00000560483 ZNF687Q8N1G0 1237 aa11.16□□□□□ -0.62
LRRC28-219ENST00000560483 SBNO1A3KN83 1393 aa11.16□□□□□ -0.62
LRRC28-219ENST00000560483 PLEKHG3A1L390 1219 aa11.15□□□□□ -0.62
LRRC28-219ENST00000560483 RIOK3O14730 519 aaKnown RBP11.15□□□□□ -0.62
LRRC28-219ENST00000560483 HDGFL2Q7Z4V5 671 aaPredicted RBP11.15□□□□□ -0.62
LRRC28-219ENST00000560483 TOPAZ1Q8N9V7 1692 aa11.14□□□□□ -0.63
LRRC28-219ENST00000560483 RIMBP2O15034 1052 aa11.14□□□□□ -0.63
LRRC28-219ENST00000560483 EIF4G2P78344 907 aaKnown RBP eCLIP11.14□□□□□ -0.63
LRRC28-219ENST00000560483 ILDR2Q71H61 639 aa11.14□□□□□ -0.63
LRRC28-219ENST00000560483 USP21Q9UK80 565 aa11.14□□□□□ -0.63
LRRC28-219ENST00000560483 CCDC9Q9Y3X0 531 aaKnown RBP11.14□□□□□ -0.63
LRRC28-219ENST00000560483 SOX12O15370 315 aa11.13□□□□□ -0.63
LRRC28-219ENST00000560483 CDCA8Q53HL2 280 aa11.13□□□□□ -0.63
LRRC28-219ENST00000560483 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.13□□□□□ -0.63
LRRC28-219ENST00000560483 KTN1Q86UP2 1357 aaKnown RBP11.13□□□□□ -0.63
LRRC28-219ENST00000560483 SBNO2Q9Y2G9 1366 aa11.13□□□□□ -0.63
LRRC28-219ENST00000560483 COL22A1Q8NFW1 1626 aaPredicted RBP11.13□□□□□ -0.63
LRRC28-219ENST00000560483 NLRP6P59044 892 aa11.12□□□□□ -0.63
LRRC28-219ENST00000560483 ZSWIM6Q9HCJ5 1215 aa11.12□□□□□ -0.63
LRRC28-219ENST00000560483 TERF2IPQ9NYB0 399 aa11.12□□□□□ -0.63
LRRC28-219ENST00000560483 POLR3AO14802 1390 aaPredicted RBP11.12□□□□□ -0.63
LRRC28-219ENST00000560483 TRPM3Q9HCF6 1732 aaPredicted RBP11.12□□□□□ -0.63
LRRC28-219ENST00000560483 RXRBP28702 533 aa11.11□□□□□ -0.63
LRRC28-219ENST00000560483 POTEAQ6S8J7 498 aa11.11□□□□□ -0.63
LRRC28-219ENST00000560483 NLRP13Q86W25 1043 aa11.11□□□□□ -0.63
LRRC28-219ENST00000560483 FBXO22Q8NEZ5 403 aa11.11□□□□□ -0.63
LRRC28-219ENST00000560483 SLC12A5Q9H2X9 1139 aa11.11□□□□□ -0.63
LRRC28-219ENST00000560483 QTRT2Q9H974 415 aaKnown RBP11.11□□□□□ -0.63
LRRC28-219ENST00000560483 PRDM11Q9NQV5 511 aa11.11□□□□□ -0.63
LRRC28-219ENST00000560483 RGS17Q9UGC6 210 aaPredicted RBP11.11□□□□□ -0.63
LRRC28-219ENST00000560483 A0A0G2JS52 829 aa11.1□□□□□ -0.63
LRRC28-219ENST00000560483 HSPA5P11021 654 aaKnown RBP11.1□□□□□ -0.63
LRRC28-219ENST00000560483 ZC3H6P61129 1189 aaKnown RBP11.1□□□□□ -0.63
LRRC28-219ENST00000560483 MYT1Q01538 1121 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms