RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 NLRP6P59044 892 aa16.33■□□□□ 0.2
SHMT2-229ENST00000557348 PDE3AQ14432 1141 aa16.33■□□□□ 0.2
SHMT2-229ENST00000557348 B4GALNT3Q6L9W6 998 aa16.33■□□□□ 0.2
SHMT2-229ENST00000557348 TRIM35Q9UPQ4 493 aa16.33■□□□□ 0.2
SHMT2-229ENST00000557348 NOP58Q9Y2X3 529 aaKnown RBP16.33■□□□□ 0.2
SHMT2-229ENST00000557348 DEKP35659 375 aaKnown RBP16.32■□□□□ 0.2
SHMT2-229ENST00000557348 AAMPQ13685 434 aa16.32■□□□□ 0.2
SHMT2-229ENST00000557348 EIF4A2Q14240 407 aaKnown RBP16.32■□□□□ 0.2
SHMT2-229ENST00000557348 ZNF428Q96B54 188 aa16.32■□□□□ 0.2
SHMT2-229ENST00000557348 FBLN1P23142 703 aa16.31■□□□□ 0.2
SHMT2-229ENST00000557348 ILDR1Q86SU0 546 aaPredicted RBP16.31■□□□□ 0.2
SHMT2-229ENST00000557348 ABTB2Q8N961 1025 aa16.31■□□□□ 0.2
SHMT2-229ENST00000557348 EXOC6Q8TAG9 804 aa16.31■□□□□ 0.2
SHMT2-229ENST00000557348 MS4A1P11836 297 aa16.3■□□□□ 0.2
SHMT2-229ENST00000557348 MAP3K19Q56UN5 1328 aa16.3■□□□□ 0.2
SHMT2-229ENST00000557348 ESCO1Q5FWF5 840 aa16.3■□□□□ 0.2
SHMT2-229ENST00000557348 KCNH5Q8NCM2 988 aa16.3■□□□□ 0.2
SHMT2-229ENST00000557348 HMOX1P09601 288 aa16.3■□□□□ 0.2
SHMT2-229ENST00000557348 AMPHP49418 695 aa16.3■□□□□ 0.2
SHMT2-229ENST00000557348 PSME1Q06323 249 aa16.3■□□□□ 0.2
SHMT2-229ENST00000557348 RGPD1P0DJD0 1748 aa16.29■□□□□ 0.2
SHMT2-229ENST00000557348 PEAK1Q9H792 1746 aa16.28■□□□□ 0.2
SHMT2-229ENST00000557348 CANXP27824 592 aaKnown RBP16.28■□□□□ 0.2
SHMT2-229ENST00000557348 RARSP54136 660 aaKnown RBP16.28■□□□□ 0.2
SHMT2-229ENST00000557348 PLIN1O60240 522 aa16.27■□□□□ 0.2
SHMT2-229ENST00000557348 PAK3O75914 559 aaPredicted RBP16.27■□□□□ 0.2
SHMT2-229ENST00000557348 GNAI1P63096 354 aa16.27■□□□□ 0.2
SHMT2-229ENST00000557348 MST1RQ04912 1400 aa16.27■□□□□ 0.2
SHMT2-229ENST00000557348 KDRP35968 1356 aa16.27■□□□□ 0.2
SHMT2-229ENST00000557348 ATF3P18847 181 aa16.27■□□□□ 0.19
SHMT2-229ENST00000557348 CRBNQ96SW2 442 aa16.27■□□□□ 0.19
SHMT2-229ENST00000557348 IFT57Q9NWB7 429 aa16.27■□□□□ 0.19
SHMT2-229ENST00000557348 USP35Q9P2H5 1018 aa16.27■□□□□ 0.19
SHMT2-229ENST00000557348 C1orf167Q5SNV9 1468 aa16.27■□□□□ 0.19
SHMT2-229ENST00000557348 HSP90AB2PQ58FF8 381 aa16.26■□□□□ 0.19
SHMT2-229ENST00000557348 ANP32AP39687 249 aaKnown RBP16.25■□□□□ 0.19
SHMT2-229ENST00000557348 HAP1P54257 671 aaPredicted RBP16.25■□□□□ 0.19
SHMT2-229ENST00000557348 SULT6B1Q6IMI4 303 aa16.25■□□□□ 0.19
SHMT2-229ENST00000557348 CADPS2Q86UW7 1296 aa16.25■□□□□ 0.19
SHMT2-229ENST00000557348 TMEM94Q12767 1356 aa16.25■□□□□ 0.19
SHMT2-229ENST00000557348 IGSF1Q8N6C5 1336 aa16.25■□□□□ 0.19
SHMT2-229ENST00000557348 FBXO41Q8TF61 875 aa16.24■□□□□ 0.19
SHMT2-229ENST00000557348 PHACTR3Q96KR7 559 aa16.24■□□□□ 0.19
SHMT2-229ENST00000557348 MARF1Q9Y4F3 1742 aaKnown RBP16.24■□□□□ 0.19
SHMT2-229ENST00000557348 PHRF1Q9P1Y6 1649 aaKnown RBP16.24■□□□□ 0.19
SHMT2-229ENST00000557348 BCAR3O75815 825 aa16.24■□□□□ 0.19
SHMT2-229ENST00000557348 HOXC9P31274 260 aa16.23■□□□□ 0.19
SHMT2-229ENST00000557348 ALDH1L2Q3SY69 923 aa16.23■□□□□ 0.19
SHMT2-229ENST00000557348 CERKQ8TCT0 537 aa16.23■□□□□ 0.19
SHMT2-229ENST00000557348 MSH6P52701 1360 aa16.23■□□□□ 0.19
SHMT2-229ENST00000557348 KIF16BQ96L93 1317 aa16.22■□□□□ 0.19
SHMT2-229ENST00000557348 SLIT3O75094 1523 aa16.22■□□□□ 0.19
SHMT2-229ENST00000557348 NFAT5O94916 1531 aa16.22■□□□□ 0.19
SHMT2-229ENST00000557348 IPO9Q96P70 1041 aaKnown RBP16.22■□□□□ 0.19
SHMT2-229ENST00000557348 SOX12O15370 315 aa16.21■□□□□ 0.19
SHMT2-229ENST00000557348 EXOSC9Q06265 439 aaKnown RBP16.21■□□□□ 0.19
SHMT2-229ENST00000557348 RTL5Q5HYW3 569 aaPredicted RBP16.21■□□□□ 0.19
SHMT2-229ENST00000557348 GAS2L2Q8NHY3 880 aa16.21■□□□□ 0.19
SHMT2-229ENST00000557348 CFAP44Q96MT7 982 aa16.21■□□□□ 0.19
SHMT2-229ENST00000557348 HTATSF1O43719 755 aaKnown RBP16.21■□□□□ 0.18
SHMT2-229ENST00000557348 ZNF853P0CG23 659 aa16.21■□□□□ 0.18
SHMT2-229ENST00000557348 IP6K1Q92551 441 aa16.21■□□□□ 0.18
SHMT2-229ENST00000557348 RBM33Q96EV2 1170 aaKnown RBP16.21■□□□□ 0.18
SHMT2-229ENST00000557348 USP19O94966 1318 aa16.2■□□□□ 0.18
SHMT2-229ENST00000557348 IPO8O15397 1037 aaKnown RBP16.2■□□□□ 0.18
SHMT2-229ENST00000557348 BRPF1P55201 1214 aaPredicted RBP16.2■□□□□ 0.18
SHMT2-229ENST00000557348 C20orf194Q5TEA3 1177 aa16.2■□□□□ 0.18
SHMT2-229ENST00000557348 TSR2Q969E8 191 aaKnown RBP16.2■□□□□ 0.18
SHMT2-229ENST00000557348 ORAI2Q96SN7 254 aa16.2■□□□□ 0.18
SHMT2-229ENST00000557348 ZKSCAN2Q63HK3 967 aa16.19■□□□□ 0.18
SHMT2-229ENST00000557348 CENPQQ7L2Z9 268 aaPredicted RBP16.19■□□□□ 0.18
SHMT2-229ENST00000557348 TRPM3Q9HCF6 1732 aaPredicted RBP16.19■□□□□ 0.18
SHMT2-229ENST00000557348 FOXO3O43524 673 aa16.18■□□□□ 0.18
SHMT2-229ENST00000557348 KRT28Q7Z3Y7 464 aa16.18■□□□□ 0.18
SHMT2-229ENST00000557348 SMC4Q9NTJ3 1288 aa16.18■□□□□ 0.18
SHMT2-229ENST00000557348 NPHP3Q7Z494 1330 aa16.18■□□□□ 0.18
SHMT2-229ENST00000557348 NUTM2GQ5VZR2 741 aa16.18■□□□□ 0.18
SHMT2-229ENST00000557348 AEBP1Q8IUX7 1158 aa16.18■□□□□ 0.18
SHMT2-229ENST00000557348 FRAT1Q92837 279 aaPredicted RBP16.18■□□□□ 0.18
SHMT2-229ENST00000557348 EYA1Q99502 592 aa16.18■□□□□ 0.18
SHMT2-229ENST00000557348 LTBP4Q8N2S1 1624 aa16.17■□□□□ 0.18
SHMT2-229ENST00000557348 RTF1Q92541 710 aaKnown RBP16.17■□□□□ 0.18
SHMT2-229ENST00000557348 STRCP1A6NGW2 1772 aa16.16■□□□□ 0.18
SHMT2-229ENST00000557348 FTSJ3Q8IY81 847 aaKnown RBP16.15■□□□□ 0.18
SHMT2-229ENST00000557348 CHMP4BQ9H444 224 aaKnown RBP16.15■□□□□ 0.18
SHMT2-229ENST00000557348 LTN1O94822 1766 aa16.15■□□□□ 0.18
SHMT2-229ENST00000557348 TCERG1O14776 1098 aaKnown RBP16.14■□□□□ 0.18
SHMT2-229ENST00000557348 GCP02774 474 aa16.14■□□□□ 0.18
SHMT2-229ENST00000557348 CLUAP1Q96AJ1 413 aa16.14■□□□□ 0.18
SHMT2-229ENST00000557348 ZBTB47Q9UFB7 747 aaPredicted RBP16.14■□□□□ 0.18
SHMT2-229ENST00000557348 KIAA0232Q92628 1395 aa16.14■□□□□ 0.17
SHMT2-229ENST00000557348 ABCC6O95255 1503 aa16.14■□□□□ 0.17
SHMT2-229ENST00000557348 DLG5Q8TDM6 1919 aa16.14■□□□□ 0.17
SHMT2-229ENST00000557348 DZIP1LQ8IYY4 767 aaKnown RBP16.14■□□□□ 0.17
SHMT2-229ENST00000557348 ARHGAP45Q92619 1136 aa16.14■□□□□ 0.17
SHMT2-229ENST00000557348 MBIPQ9NS73 344 aa16.14■□□□□ 0.17
SHMT2-229ENST00000557348 LAS1LQ9Y4W2 734 aaKnown RBP16.14■□□□□ 0.17
SHMT2-229ENST00000557348 ATF7IPQ6VMQ6 1270 aa16.13■□□□□ 0.17
SHMT2-229ENST00000557348 ARHGEF25Q86VW2 580 aa16.13■□□□□ 0.17
SHMT2-229ENST00000557348 SSH1Q8WYL5 1049 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms