RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 MAST1Q9Y2H9 1570 aa5.98□□□□□ -1.45
SYNE2-223ENST00000557005 GRIN2AQ12879 1464 aa5.98□□□□□ -1.45
SYNE2-223ENST00000557005 UBTFL1P0CB47 393 aaPredicted RBP5.98□□□□□ -1.45
SYNE2-223ENST00000557005 ZKSCAN1P17029 563 aaPredicted RBP5.98□□□□□ -1.45
SYNE2-223ENST00000557005 DCTN1Q14203 1278 aa5.98□□□□□ -1.45
SYNE2-223ENST00000557005 TNMDQ9H2S6 317 aa5.98□□□□□ -1.45
SYNE2-223ENST00000557005 ADGRF5Q8IZF2 1346 aa5.98□□□□□ -1.45
SYNE2-223ENST00000557005 GNAI2P04899 355 aa5.98□□□□□ -1.45
SYNE2-223ENST00000557005 RAB3GAP1Q15042 981 aa5.98□□□□□ -1.45
SYNE2-223ENST00000557005 NUTM2GQ5VZR2 741 aa5.98□□□□□ -1.45
SYNE2-223ENST00000557005 NGDNQ8NEJ9 315 aaKnown RBP5.98□□□□□ -1.45
SYNE2-223ENST00000557005 PDRG1Q9NUG6 133 aa5.98□□□□□ -1.45
SYNE2-223ENST00000557005 KIF3AQ9Y496 699 aa5.98□□□□□ -1.45
SYNE2-223ENST00000557005 WDR33Q9C0J8 1336 aaKnown RBP5.98□□□□□ -1.45
SYNE2-223ENST00000557005 UHRF1BP1Q6BDS2 1440 aa5.98□□□□□ -1.45
SYNE2-223ENST00000557005 POLR1AO95602 1720 aaPredicted RBP5.98□□□□□ -1.45
SYNE2-223ENST00000557005 ADCY5O95622 1261 aa5.98□□□□□ -1.45
SYNE2-223ENST00000557005 USP25Q9UHP3 1055 aa5.98□□□□□ -1.45
SYNE2-223ENST00000557005 CWC27Q6UX04 472 aaKnown RBP5.97□□□□□ -1.45
SYNE2-223ENST00000557005 MNS1Q8NEH6 495 aa5.97□□□□□ -1.45
SYNE2-223ENST00000557005 GAS2L2Q8NHY3 880 aa5.97□□□□□ -1.45
SYNE2-223ENST00000557005 TMX1Q9H3N1 280 aa5.97□□□□□ -1.45
SYNE2-223ENST00000557005 C9orf78Q9NZ63 289 aaPredicted RBP5.97□□□□□ -1.45
SYNE2-223ENST00000557005 CABP1Q9NZU7 370 aa5.97□□□□□ -1.45
SYNE2-223ENST00000557005 DMRT2Q9Y5R5 561 aa5.97□□□□□ -1.45
SYNE2-223ENST00000557005 CCDC192P0DO97 292 aa5.97□□□□□ -1.45
SYNE2-223ENST00000557005 LRSAM1Q6UWE0 723 aa5.97□□□□□ -1.45
SYNE2-223ENST00000557005 CASTP20810 708 aaKnown RBP5.97□□□□□ -1.45
SYNE2-223ENST00000557005 CCDC183Q5T5S1 534 aa5.97□□□□□ -1.45
SYNE2-223ENST00000557005 TTC22Q5TAA0 569 aa5.97□□□□□ -1.45
SYNE2-223ENST00000557005 A2MP01023 1474 aa5.97□□□□□ -1.45
SYNE2-223ENST00000557005 NOS1P29475 1434 aa5.97□□□□□ -1.45
SYNE2-223ENST00000557005 SPATA31E1Q6ZUB1 1445 aa5.97□□□□□ -1.45
SYNE2-223ENST00000557005 DNAJC2Q99543 621 aaKnown RBP5.97□□□□□ -1.45
SYNE2-223ENST00000557005 PES1O00541 588 aaKnown RBP5.96□□□□□ -1.45
SYNE2-223ENST00000557005 HDGFP51858 240 aaKnown RBP5.96□□□□□ -1.45
SYNE2-223ENST00000557005 HMGN5P82970 282 aaKnown RBP5.96□□□□□ -1.45
SYNE2-223ENST00000557005 C16orf71Q8IYS4 520 aaPredicted RBP5.96□□□□□ -1.45
SYNE2-223ENST00000557005 NOC3LQ8WTT2 800 aaKnown RBP5.96□□□□□ -1.45
SYNE2-223ENST00000557005 PRIM1P49642 420 aaKnown RBP5.96□□□□□ -1.45
SYNE2-223ENST00000557005 TTLL5Q6EMB2 1281 aa5.96□□□□□ -1.45
SYNE2-223ENST00000557005 CCDC83Q8IWF9 413 aa5.96□□□□□ -1.45
SYNE2-223ENST00000557005 DDX54Q8TDD1 881 aaKnown RBP5.96□□□□□ -1.45
SYNE2-223ENST00000557005 MCM2P49736 904 aa5.96□□□□□ -1.46
SYNE2-223ENST00000557005 AIMP1Q12904 312 aaKnown RBP5.96□□□□□ -1.46
SYNE2-223ENST00000557005 SETQ01105 290 aaPredicted RBP5.96□□□□□ -1.46
SYNE2-223ENST00000557005 HDAC1Q13547 482 aaPredicted RBP5.96□□□□□ -1.46
SYNE2-223ENST00000557005 ALDH1L2Q3SY69 923 aa5.96□□□□□ -1.46
SYNE2-223ENST00000557005 MCM10Q7L590 875 aa5.96□□□□□ -1.46
SYNE2-223ENST00000557005 CCDC112Q8NEF3 446 aa5.96□□□□□ -1.46
SYNE2-223ENST00000557005 JAKMIP1Q96N16 626 aaKnown RBP5.96□□□□□ -1.46
SYNE2-223ENST00000557005 FSD1Q9BTV5 496 aa5.96□□□□□ -1.46
SYNE2-223ENST00000557005 CNPY2Q9Y2B0 182 aa5.96□□□□□ -1.46
SYNE2-223ENST00000557005 KLHL40Q2TBA0 621 aa5.96□□□□□ -1.46
SYNE2-223ENST00000557005 IL1RAPL2Q9NP60 686 aa5.96□□□□□ -1.46
SYNE2-223ENST00000557005 ARGLU1Q9NWB6 273 aaPredicted RBP5.96□□□□□ -1.46
SYNE2-223ENST00000557005 ZNF608Q9ULD9 1512 aaPredicted RBP5.95□□□□□ -1.46
SYNE2-223ENST00000557005 DYNC1I1O14576 645 aa5.95□□□□□ -1.46
SYNE2-223ENST00000557005 SURF6O75683 361 aaKnown RBP5.95□□□□□ -1.46
SYNE2-223ENST00000557005 AEBP2Q6ZN18 517 aaPredicted RBP5.95□□□□□ -1.46
SYNE2-223ENST00000557005 CCDC73Q6ZRK6 1079 aa5.95□□□□□ -1.46
SYNE2-223ENST00000557005 DUOX2Q9NRD8 1548 aa5.95□□□□□ -1.46
SYNE2-223ENST00000557005 PSMA5P28066 241 aa5.95□□□□□ -1.46
SYNE2-223ENST00000557005 G3BP1Q13283 466 aaKnown RBP eCLIP5.95□□□□□ -1.46
SYNE2-223ENST00000557005 NFE2L2Q16236 605 aa5.95□□□□□ -1.46
SYNE2-223ENST00000557005 AEBP1Q8IUX7 1158 aa5.95□□□□□ -1.46
SYNE2-223ENST00000557005 SNX21Q969T3 373 aa5.95□□□□□ -1.46
SYNE2-223ENST00000557005 RBSNQ9H1K0 784 aa5.95□□□□□ -1.46
SYNE2-223ENST00000557005 TOMM22Q9NS69 142 aa5.95□□□□□ -1.46
SYNE2-223ENST00000557005 CCDC66A2RUB6 948 aa5.95□□□□□ -1.46
SYNE2-223ENST00000557005 TAF7LQ5H9L4 462 aa5.95□□□□□ -1.46
SYNE2-223ENST00000557005 RNF20Q5VTR2 975 aa5.95□□□□□ -1.46
SYNE2-223ENST00000557005 SPATA32Q96LK8 384 aa5.95□□□□□ -1.46
SYNE2-223ENST00000557005 NUP62CLQ9H1M0 184 aa5.95□□□□□ -1.46
SYNE2-223ENST00000557005 EXOC6BQ9Y2D4 811 aa5.95□□□□□ -1.46
SYNE2-223ENST00000557005 CSB-PGBD3P0DP91 1061 aa5.95□□□□□ -1.46
SYNE2-223ENST00000557005 C1orf141Q5JVX7 400 aa5.95□□□□□ -1.46
SYNE2-223ENST00000557005 CCDC30Q5VVM6 783 aa5.95□□□□□ -1.46
SYNE2-223ENST00000557005 NAT10Q9H0A0 1025 aaKnown RBP5.95□□□□□ -1.46
SYNE2-223ENST00000557005 CYP46A1Q9Y6A2 500 aa5.95□□□□□ -1.46
SYNE2-223ENST00000557005 USP48Q86UV5 1035 aa5.94□□□□□ -1.46
SYNE2-223ENST00000557005 PIK3C2GO75747 1445 aa5.94□□□□□ -1.46
SYNE2-223ENST00000557005 CROCC2H7BZ55 1655 aa5.94□□□□□ -1.46
SYNE2-223ENST00000557005 ZGPATQ8N5A5 531 aaKnown RBP5.94□□□□□ -1.46
SYNE2-223ENST00000557005 CCDC94Q9BW85 323 aaPredicted RBP5.94□□□□□ -1.46
SYNE2-223ENST00000557005 SIL1Q9H173 461 aa5.94□□□□□ -1.46
SYNE2-223ENST00000557005 MBIPQ9NS73 344 aa5.94□□□□□ -1.46
SYNE2-223ENST00000557005 FAM83GA6ND36 823 aa5.94□□□□□ -1.46
SYNE2-223ENST00000557005 MX1P20591 662 aa5.94□□□□□ -1.46
SYNE2-223ENST00000557005 CCT4P50991 539 aaKnown RBP5.94□□□□□ -1.46
SYNE2-223ENST00000557005 GPS2Q13227 327 aa5.94□□□□□ -1.46
SYNE2-223ENST00000557005 SKIDA1Q1XH10 827 aa5.94□□□□□ -1.46
SYNE2-223ENST00000557005 BMP2KLQ5H9B9 411 aa5.94□□□□□ -1.46
SYNE2-223ENST00000557005 SMC5Q8IY18 1101 aa5.94□□□□□ -1.46
SYNE2-223ENST00000557005 FAM177A1Q8N128 213 aaPredicted RBP5.94□□□□□ -1.46
SYNE2-223ENST00000557005 TRERF1Q96PN7 1200 aa5.94□□□□□ -1.46
SYNE2-223ENST00000557005 CGNQ9P2M7 1197 aaKnown RBP5.94□□□□□ -1.46
SYNE2-223ENST00000557005 KDM5BQ9UGL1 1544 aa5.94□□□□□ -1.46
SYNE2-223ENST00000557005 SYNMO15061 1565 aa5.94□□□□□ -1.46
SYNE2-223ENST00000557005 FBLN1P23142 703 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms