RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 ANKRD36BQ8N2N9 1353 aa6.85□□□□□ -1.31
LIMA1-212ENST00000552491 L1TD1Q5T7N2 865 aaKnown RBP6.85□□□□□ -1.31
LIMA1-212ENST00000552491 IER5LQ5T953 404 aa6.85□□□□□ -1.31
LIMA1-212ENST00000552491 SMC5Q8IY18 1101 aa6.85□□□□□ -1.31
LIMA1-212ENST00000552491 TMEM57Q8N5G2 664 aa6.85□□□□□ -1.31
LIMA1-212ENST00000552491 COL3A1P02461 1466 aaPredicted RBP6.85□□□□□ -1.31
LIMA1-212ENST00000552491 U2SURPO15042 1029 aaKnown RBP6.85□□□□□ -1.31
LIMA1-212ENST00000552491 ATF7IPQ6VMQ6 1270 aa6.85□□□□□ -1.31
LIMA1-212ENST00000552491 PROM2Q8N271 834 aa6.85□□□□□ -1.31
LIMA1-212ENST00000552491 RSPH6AQ9H0K4 717 aa6.85□□□□□ -1.31
LIMA1-212ENST00000552491 GGNBP2Q9H3C7 697 aa6.85□□□□□ -1.31
LIMA1-212ENST00000552491 PCDHB13Q9Y5F0 798 aa6.85□□□□□ -1.31
LIMA1-212ENST00000552491 A0A1W2PP64 1363 aa6.85□□□□□ -1.31
LIMA1-212ENST00000552491 FRMPD1Q5SYB0 1578 aa6.84□□□□□ -1.31
LIMA1-212ENST00000552491 TRAK2O60296 914 aa6.84□□□□□ -1.31
LIMA1-212ENST00000552491 GGT6Q6P531 493 aa6.84□□□□□ -1.31
LIMA1-212ENST00000552491 ZBTB40Q9NUA8 1239 aa6.84□□□□□ -1.31
LIMA1-212ENST00000552491 CHMP5Q9NZZ3 219 aa6.84□□□□□ -1.31
LIMA1-212ENST00000552491 SIGLEC1Q9BZZ2 1709 aa6.84□□□□□ -1.31
LIMA1-212ENST00000552491 CAMSAP1Q5T5Y3 1602 aa6.84□□□□□ -1.31
LIMA1-212ENST00000552491 GOLGA6L3A6NEY3 463 aa6.84□□□□□ -1.31
LIMA1-212ENST00000552491 DDIT3P35638 169 aa6.84□□□□□ -1.31
LIMA1-212ENST00000552491 EVC2Q86UK5 1308 aa6.84□□□□□ -1.31
LIMA1-212ENST00000552491 CYB5RLQ6IPT4 315 aa6.83□□□□□ -1.32
LIMA1-212ENST00000552491 LNPKQ9C0E8 428 aa6.83□□□□□ -1.32
LIMA1-212ENST00000552491 DDX19BQ9UMR2 479 aa6.83□□□□□ -1.32
LIMA1-212ENST00000552491 NCOA3Q9Y6Q9 1424 aa6.83□□□□□ -1.32
LIMA1-212ENST00000552491 CT47B1P0C2W7 299 aaPredicted RBP6.83□□□□□ -1.32
LIMA1-212ENST00000552491 MARVELD3Q96A59 401 aa6.83□□□□□ -1.32
LIMA1-212ENST00000552491 NSD2O96028 1365 aa6.83□□□□□ -1.32
LIMA1-212ENST00000552491 ABCC11Q96J66 1382 aa6.83□□□□□ -1.32
LIMA1-212ENST00000552491 CD2BP2O95400 341 aaKnown RBP6.83□□□□□ -1.32
LIMA1-212ENST00000552491 KIF2CQ99661 725 aa6.83□□□□□ -1.32
LIMA1-212ENST00000552491 FYB1O15117 783 aa6.82□□□□□ -1.32
LIMA1-212ENST00000552491 FBLN1P23142 703 aa6.82□□□□□ -1.32
LIMA1-212ENST00000552491 RBM25P49756 843 aaKnown RBP6.82□□□□□ -1.32
LIMA1-212ENST00000552491 RIPK4P57078 832 aa6.82□□□□□ -1.32
LIMA1-212ENST00000552491 NUCB1Q02818 461 aa6.82□□□□□ -1.32
LIMA1-212ENST00000552491 UBE2Q2Q8WVN8 375 aa6.82□□□□□ -1.32
LIMA1-212ENST00000552491 PUS7Q96PZ0 661 aaKnown RBP6.82□□□□□ -1.32
LIMA1-212ENST00000552491 ASXL2Q76L83 1435 aa6.82□□□□□ -1.32
LIMA1-212ENST00000552491 NEXMIFQ5QGS0 1516 aa6.82□□□□□ -1.32
LIMA1-212ENST00000552491 IFNL1Q8IU54 200 aa6.82□□□□□ -1.32
LIMA1-212ENST00000552491 STK26Q9P289 416 aa6.82□□□□□ -1.32
LIMA1-212ENST00000552491 CD163L1Q9NR16 1453 aa6.81□□□□□ -1.32
LIMA1-212ENST00000552491 ABCC3O15438 1527 aa6.81□□□□□ -1.32
LIMA1-212ENST00000552491 GAS2L3Q86XJ1 694 aa6.81□□□□□ -1.32
LIMA1-212ENST00000552491 HSCBQ8IWL3 235 aa6.81□□□□□ -1.32
LIMA1-212ENST00000552491 TNPO1Q92973 898 aaKnown RBP6.81□□□□□ -1.32
LIMA1-212ENST00000552491 RPGRIP1LQ68CZ1 1315 aa6.81□□□□□ -1.32
LIMA1-212ENST00000552491 HECW2Q9P2P5 1572 aa6.81□□□□□ -1.32
LIMA1-212ENST00000552491 IL16Q14005 1332 aa6.81□□□□□ -1.32
LIMA1-212ENST00000552491 ERBB4Q15303 1308 aa6.81□□□□□ -1.32
LIMA1-212ENST00000552491 CHD1LQ86WJ1 897 aa6.81□□□□□ -1.32
LIMA1-212ENST00000552491 C1orf115Q9H7X2 142 aa6.81□□□□□ -1.32
LIMA1-212ENST00000552491 PPIP5K1Q6PFW1 1433 aa6.8□□□□□ -1.32
LIMA1-212ENST00000552491 PLCG2P16885 1265 aa6.8□□□□□ -1.32
LIMA1-212ENST00000552491 SRPK2P78362 688 aaKnown RBP6.8□□□□□ -1.32
LIMA1-212ENST00000552491 SNX21Q969T3 373 aa6.8□□□□□ -1.32
LIMA1-212ENST00000552491 PIK3C2BO00750 1634 aa6.8□□□□□ -1.32
LIMA1-212ENST00000552491 MINK1Q8N4C8 1332 aaPredicted RBP6.8□□□□□ -1.32
LIMA1-212ENST00000552491 CLCN1P35523 988 aa6.8□□□□□ -1.32
LIMA1-212ENST00000552491 SIRT2Q8IXJ6 389 aa6.8□□□□□ -1.32
LIMA1-212ENST00000552491 THUMPD2Q9BTF0 503 aaKnown RBP6.8□□□□□ -1.32
LIMA1-212ENST00000552491 TMEM106CQ9BVX2 250 aa6.8□□□□□ -1.32
LIMA1-212ENST00000552491 GRPEL1Q9HAV7 217 aa6.8□□□□□ -1.32
LIMA1-212ENST00000552491 PNPLA6Q8IY17 1366 aa6.79□□□□□ -1.32
LIMA1-212ENST00000552491 MYO5BQ9ULV0 1848 aa6.79□□□□□ -1.32
LIMA1-212ENST00000552491 KIF16BQ96L93 1317 aa6.79□□□□□ -1.32
LIMA1-212ENST00000552491 ANKRD26Q9UPS8 1709 aa6.79□□□□□ -1.32
LIMA1-212ENST00000552491 ZBTB7BO15156 539 aaPredicted RBP6.79□□□□□ -1.32
LIMA1-212ENST00000552491 PLEKHG5O94827 1062 aa6.79□□□□□ -1.32
LIMA1-212ENST00000552491 MRE11P49959 708 aa6.79□□□□□ -1.32
LIMA1-212ENST00000552491 IDI1Q13907 227 aa6.79□□□□□ -1.32
LIMA1-212ENST00000552491 TSPYL6Q8N831 410 aa6.79□□□□□ -1.32
LIMA1-212ENST00000552491 CFAP74Q9C0B2 1584 aa6.79□□□□□ -1.32
LIMA1-212ENST00000552491 AK9Q5TCS8 1911 aa6.79□□□□□ -1.32
LIMA1-212ENST00000552491 LRRC7Q96NW7 1537 aa6.79□□□□□ -1.32
LIMA1-212ENST00000552491 DDX11L8A8MPP1 907 aa6.79□□□□□ -1.32
LIMA1-212ENST00000552491 VGFO15240 615 aaPredicted RBP6.79□□□□□ -1.32
LIMA1-212ENST00000552491 DIAPH1O60610 1272 aaKnown RBP6.79□□□□□ -1.32
LIMA1-212ENST00000552491 PHACTR3Q96KR7 559 aa6.79□□□□□ -1.32
LIMA1-212ENST00000552491 SGIP1Q9BQI5 828 aa6.79□□□□□ -1.32
LIMA1-212ENST00000552491 MED14O60244 1454 aa6.79□□□□□ -1.32
LIMA1-212ENST00000552491 PTPRMP28827 1452 aa6.79□□□□□ -1.32
LIMA1-212ENST00000552491 POGZQ7Z3K3 1410 aa6.79□□□□□ -1.32
LIMA1-212ENST00000552491 RAB3GAP1Q15042 981 aa6.78□□□□□ -1.32
LIMA1-212ENST00000552491 BMP2KLQ5H9B9 411 aa6.78□□□□□ -1.32
LIMA1-212ENST00000552491 ANKRD45Q5TZF3 282 aa6.78□□□□□ -1.32
LIMA1-212ENST00000552491 IPO8O15397 1037 aaKnown RBP6.78□□□□□ -1.32
LIMA1-212ENST00000552491 VAMP4O75379 141 aa6.78□□□□□ -1.32
LIMA1-212ENST00000552491 PRKAR2BP31323 418 aa6.78□□□□□ -1.32
LIMA1-212ENST00000552491 IRX5P78411 483 aaPredicted RBP6.78□□□□□ -1.32
LIMA1-212ENST00000552491 ALDH1L2Q3SY69 923 aa6.78□□□□□ -1.32
LIMA1-212ENST00000552491 TBC1D9Q6ZT07 1266 aa6.78□□□□□ -1.32
LIMA1-212ENST00000552491 MRPL50Q8N5N7 158 aaKnown RBP6.78□□□□□ -1.32
LIMA1-212ENST00000552491 PRAM1Q96QH2 718 aa6.78□□□□□ -1.32
LIMA1-212ENST00000552491 MLH3Q9UHC1 1453 aa6.78□□□□□ -1.32
LIMA1-212ENST00000552491 ELL2O00472 640 aaPredicted RBP6.77□□□□□ -1.33
LIMA1-212ENST00000552491 HSP90AB1P08238 724 aaKnown RBP6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms