RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 MCM10Q7L590 875 aa14.24□□□□□ -0.13
CUX1-212ENST00000547394 USP6P35125 1406 aa14.23□□□□□ -0.13
CUX1-212ENST00000547394 FOXO3O43524 673 aa14.23□□□□□ -0.13
CUX1-212ENST00000547394 NLRP6P59044 892 aa14.23□□□□□ -0.13
CUX1-212ENST00000547394 DZIP1LQ8IYY4 767 aaKnown RBP14.23□□□□□ -0.13
CUX1-212ENST00000547394 MIS18AQ9NYP9 233 aa14.23□□□□□ -0.13
CUX1-212ENST00000547394 MAP3K19Q56UN5 1328 aa14.22□□□□□ -0.13
CUX1-212ENST00000547394 MBIPQ9NS73 344 aa14.22□□□□□ -0.13
CUX1-212ENST00000547394 KNDC1Q76NI1 1749 aa14.22□□□□□ -0.13
CUX1-212ENST00000547394 ARHGAP23Q9P227 1491 aa14.21□□□□□ -0.13
CUX1-212ENST00000547394 TMEM57Q8N5G2 664 aa14.21□□□□□ -0.13
CUX1-212ENST00000547394 PNNQ9H307 717 aaKnown RBP14.21□□□□□ -0.13
CUX1-212ENST00000547394 RGPD8O14715 1765 aaPredicted RBP14.21□□□□□ -0.14
CUX1-212ENST00000547394 C8orf58Q8NAV2 365 aa14.2□□□□□ -0.14
CUX1-212ENST00000547394 SLIT1O75093 1534 aa14.2□□□□□ -0.14
CUX1-212ENST00000547394 SLC4A3P48751 1232 aa14.2□□□□□ -0.14
CUX1-212ENST00000547394 MVPQ14764 893 aaKnown RBP14.2□□□□□ -0.14
CUX1-212ENST00000547394 NOP58Q9Y2X3 529 aaKnown RBP14.2□□□□□ -0.14
CUX1-212ENST00000547394 RIMS1Q86UR5 1692 aaKnown RBP14.2□□□□□ -0.14
CUX1-212ENST00000547394 AMPHP49418 695 aa14.2□□□□□ -0.14
CUX1-212ENST00000547394 NBR1Q14596 966 aa14.2□□□□□ -0.14
CUX1-212ENST00000547394 ANKLE2Q86XL3 938 aa14.2□□□□□ -0.14
CUX1-212ENST00000547394 AATKQ6ZMQ8 1374 aa14.2□□□□□ -0.14
CUX1-212ENST00000547394 CDK12Q9NYV4 1490 aaPredicted RBP14.2□□□□□ -0.14
CUX1-212ENST00000547394 ITSN1Q15811 1721 aa14.19□□□□□ -0.14
CUX1-212ENST00000547394 MON2Q7Z3U7 1717 aa14.19□□□□□ -0.14
CUX1-212ENST00000547394 MS4A1P11836 297 aa14.19□□□□□ -0.14
CUX1-212ENST00000547394 ABTB2Q8N961 1025 aa14.19□□□□□ -0.14
CUX1-212ENST00000547394 IPO9Q96P70 1041 aaKnown RBP14.19□□□□□ -0.14
CUX1-212ENST00000547394 ATF7IPQ6VMQ6 1270 aa14.19□□□□□ -0.14
CUX1-212ENST00000547394 C1orf115Q9H7X2 142 aa14.19□□□□□ -0.14
CUX1-212ENST00000547394 USHBP1Q8N6Y0 703 aa14.18□□□□□ -0.14
CUX1-212ENST00000547394 C8orf34Q49A92 452 aa14.18□□□□□ -0.14
CUX1-212ENST00000547394 OVOS2A0A0J9YW53 1432 aa14.18□□□□□ -0.14
CUX1-212ENST00000547394 OVOS2Q6IE36 1432 aa14.18□□□□□ -0.14
CUX1-212ENST00000547394 DIP2AQ14689 1571 aa14.17□□□□□ -0.14
CUX1-212ENST00000547394 ESCO1Q5FWF5 840 aa14.17□□□□□ -0.14
CUX1-212ENST00000547394 LMOD2Q6P5Q4 547 aa14.17□□□□□ -0.14
CUX1-212ENST00000547394 AKAP12Q02952 1782 aa14.17□□□□□ -0.14
CUX1-212ENST00000547394 VAMP4O75379 141 aa14.16□□□□□ -0.14
CUX1-212ENST00000547394 IL16Q14005 1332 aa14.16□□□□□ -0.14
CUX1-212ENST00000547394 CEP170BQ9Y4F5 1589 aaPredicted RBP14.16□□□□□ -0.14
CUX1-212ENST00000547394 ZBTB47Q9UFB7 747 aaPredicted RBP14.16□□□□□ -0.14
CUX1-212ENST00000547394 PDZRN3Q9UPQ7 1066 aa14.16□□□□□ -0.14
CUX1-212ENST00000547394 TWISTNBQ3B726 338 aaPredicted RBP14.15□□□□□ -0.14
CUX1-212ENST00000547394 SEC24BO95487 1268 aa14.15□□□□□ -0.14
CUX1-212ENST00000547394 EYA1Q99502 592 aa14.15□□□□□ -0.14
CUX1-212ENST00000547394 PEAK1Q9H792 1746 aa14.14□□□□□ -0.15
CUX1-212ENST00000547394 GNAI1P63096 354 aa14.14□□□□□ -0.15
CUX1-212ENST00000547394 ORAI2Q96SN7 254 aa14.14□□□□□ -0.15
CUX1-212ENST00000547394 PTCH1Q13635 1447 aa14.14□□□□□ -0.15
CUX1-212ENST00000547394 MTHFSDQ2M296 383 aaKnown RBP14.14□□□□□ -0.15
CUX1-212ENST00000547394 FAM161AQ3B820 660 aa14.14□□□□□ -0.15
CUX1-212ENST00000547394 SSH2Q76I76 1423 aa14.13□□□□□ -0.15
CUX1-212ENST00000547394 IFT57Q9NWB7 429 aa14.13□□□□□ -0.15
CUX1-212ENST00000547394 PHF8Q9UPP1 1060 aa14.13□□□□□ -0.15
CUX1-212ENST00000547394 NCBP3Q53F19 620 aaKnown RBP14.12□□□□□ -0.15
CUX1-212ENST00000547394 CFAP44Q96MT7 982 aa14.12□□□□□ -0.15
CUX1-212ENST00000547394 TOPAZ1Q8N9V7 1692 aa14.12□□□□□ -0.15
CUX1-212ENST00000547394 ZNF853P0CG23 659 aa14.12□□□□□ -0.15
CUX1-212ENST00000547394 NECTIN2Q92692 538 aa14.12□□□□□ -0.15
CUX1-212ENST00000547394 NRKQ7Z2Y5 1582 aa14.12□□□□□ -0.15
CUX1-212ENST00000547394 MRPL50Q8N5N7 158 aaKnown RBP14.12□□□□□ -0.15
CUX1-212ENST00000547394 CT47B1P0C2W7 299 aaPredicted RBP14.11□□□□□ -0.15
CUX1-212ENST00000547394 PSME1Q06323 249 aa14.11□□□□□ -0.15
CUX1-212ENST00000547394 DDX17Q92841 729 aaKnown RBP14.11□□□□□ -0.15
CUX1-212ENST00000547394 SETD1BQ9UPS6 1966 aaKnown RBP14.11□□□□□ -0.15
CUX1-212ENST00000547394 RWDD1Q9H446 243 aaPredicted RBP14.1□□□□□ -0.15
CUX1-212ENST00000547394 USP31Q70CQ4 1352 aa14.1□□□□□ -0.15
CUX1-212ENST00000547394 TTC21AQ8NDW8 1320 aa14.1□□□□□ -0.15
CUX1-212ENST00000547394 DDX19BQ9UMR2 479 aa14.1□□□□□ -0.15
CUX1-212ENST00000547394 DLG5Q8TDM6 1919 aa14.1□□□□□ -0.15
CUX1-212ENST00000547394 KIF16BQ96L93 1317 aa14.1□□□□□ -0.15
CUX1-212ENST00000547394 HOXC9P31274 260 aa14.09□□□□□ -0.15
CUX1-212ENST00000547394 IPO8O15397 1037 aaKnown RBP14.09□□□□□ -0.15
CUX1-212ENST00000547394 LMOD3Q0VAK6 560 aa14.08□□□□□ -0.15
CUX1-212ENST00000547394 ZBTB40Q9NUA8 1239 aa14.08□□□□□ -0.15
CUX1-212ENST00000547394 FLT4P35916 1363 aa14.08□□□□□ -0.15
CUX1-212ENST00000547394 CALD1Q05682 793 aaKnown RBP14.08□□□□□ -0.16
CUX1-212ENST00000547394 HSPA2P54652 639 aa14.08□□□□□ -0.16
CUX1-212ENST00000547394 ALDH1L2Q3SY69 923 aa14.08□□□□□ -0.16
CUX1-212ENST00000547394 XRN1Q8IZH2 1706 aaKnown RBP14.08□□□□□ -0.16
CUX1-212ENST00000547394 SBNO1A3KN83 1393 aa14.07□□□□□ -0.16
CUX1-212ENST00000547394 LRRC59Q96AG4 307 aaKnown RBP14.07□□□□□ -0.16
CUX1-212ENST00000547394 PIK3C2AO00443 1686 aa14.07□□□□□ -0.16
CUX1-212ENST00000547394 LNPKQ9C0E8 428 aa14.07□□□□□ -0.16
CUX1-212ENST00000547394 RTF1Q92541 710 aaKnown RBP14.06□□□□□ -0.16
CUX1-212ENST00000547394 PROSER2Q86WR7 435 aaPredicted RBP14.06□□□□□ -0.16
CUX1-212ENST00000547394 TSPYL4Q9UJ04 414 aa14.06□□□□□ -0.16
CUX1-212ENST00000547394 CHL1O00533 1208 aa14.05□□□□□ -0.16
CUX1-212ENST00000547394 F6X3S4 739 aa14.04□□□□□ -0.16
CUX1-212ENST00000547394 ZBTB7BO15156 539 aaPredicted RBP14.04□□□□□ -0.16
CUX1-212ENST00000547394 G2E3Q7L622 706 aa14.04□□□□□ -0.16
CUX1-212ENST00000547394 APBB1O00213 710 aa14.04□□□□□ -0.16
CUX1-212ENST00000547394 NALCNQ8IZF0 1738 aa14.04□□□□□ -0.16
CUX1-212ENST00000547394 NBPF6Q5VWK0 638 aa14.03□□□□□ -0.16
CUX1-212ENST00000547394 NBPF4Q96M43 638 aa14.03□□□□□ -0.16
CUX1-212ENST00000547394 IGSF1Q8N6C5 1336 aa14.03□□□□□ -0.16
CUX1-212ENST00000547394 NPHP4O75161 1426 aaPredicted RBP14.03□□□□□ -0.16
CUX1-212ENST00000547394 SLC4A2P04920 1241 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms