RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 MAP3K19Q56UN5 1328 aa18.67■□□□□ 0.58
VPS33A-209ENST00000544349 PLIN1O60240 522 aa18.67■□□□□ 0.58
VPS33A-209ENST00000544349 HMOX1P09601 288 aa18.67■□□□□ 0.58
VPS33A-209ENST00000544349 ATF3P18847 181 aa18.67■□□□□ 0.58
VPS33A-209ENST00000544349 PRKAR2BP31323 418 aa18.67■□□□□ 0.58
VPS33A-209ENST00000544349 FOXO3O43524 673 aa18.66■□□□□ 0.58
VPS33A-209ENST00000544349 EIF4A2Q14240 407 aaKnown RBP18.66■□□□□ 0.58
VPS33A-209ENST00000544349 KIF1AQ12756 1690 aa18.66■□□□□ 0.58
VPS33A-209ENST00000544349 HSP90AB2PQ58FF8 381 aa18.65■□□□□ 0.58
VPS33A-209ENST00000544349 MST1RQ04912 1400 aa18.65■□□□□ 0.58
VPS33A-209ENST00000544349 SBNO1A3KN83 1393 aa18.65■□□□□ 0.58
VPS33A-209ENST00000544349 NEFMP07197 916 aa18.64■□□□□ 0.57
VPS33A-209ENST00000544349 FLT4P35916 1363 aa18.64■□□□□ 0.57
VPS33A-209ENST00000544349 TRIM35Q9UPQ4 493 aa18.64■□□□□ 0.57
VPS33A-209ENST00000544349 XIRP1Q702N8 1843 aaKnown RBP18.63■□□□□ 0.57
VPS33A-209ENST00000544349 RIPK4P57078 832 aa18.62■□□□□ 0.57
VPS33A-209ENST00000544349 CADPS2Q86UW7 1296 aa18.62■□□□□ 0.57
VPS33A-209ENST00000544349 AMPHP49418 695 aa18.62■□□□□ 0.57
VPS33A-209ENST00000544349 PHACTR3Q96KR7 559 aa18.62■□□□□ 0.57
VPS33A-209ENST00000544349 KIF24Q5T7B8 1368 aa18.62■□□□□ 0.57
VPS33A-209ENST00000544349 RGPD1P0DJD0 1748 aa18.61■□□□□ 0.57
VPS33A-209ENST00000544349 MSH6P52701 1360 aa18.61■□□□□ 0.57
VPS33A-209ENST00000544349 KRT28Q7Z3Y7 464 aa18.61■□□□□ 0.57
VPS33A-209ENST00000544349 TRPM3Q9HCF6 1732 aaPredicted RBP18.6■□□□□ 0.57
VPS33A-209ENST00000544349 XPCQ01831 940 aaPredicted RBP18.6■□□□□ 0.57
VPS33A-209ENST00000544349 ZNF335Q9H4Z2 1342 aaPredicted RBP18.59■□□□□ 0.57
VPS33A-209ENST00000544349 NFE2L2Q16236 605 aa18.59■□□□□ 0.57
VPS33A-209ENST00000544349 CRBNQ96SW2 442 aa18.59■□□□□ 0.57
VPS33A-209ENST00000544349 C20orf194Q5TEA3 1177 aa18.58■□□□□ 0.57
VPS33A-209ENST00000544349 SULT6B1Q6IMI4 303 aa18.58■□□□□ 0.57
VPS33A-209ENST00000544349 HOXC9P31274 260 aa18.58■□□□□ 0.56
VPS33A-209ENST00000544349 MYH16Q9H6N6 1097 aa18.58■□□□□ 0.56
VPS33A-209ENST00000544349 NFAT5O94916 1531 aa18.57■□□□□ 0.56
VPS33A-209ENST00000544349 AEBP1Q8IUX7 1158 aa18.57■□□□□ 0.56
VPS33A-209ENST00000544349 KCNH5Q8NCM2 988 aa18.57■□□□□ 0.56
VPS33A-209ENST00000544349 IL16Q14005 1332 aa18.57■□□□□ 0.56
VPS33A-209ENST00000544349 LTN1O94822 1766 aa18.57■□□□□ 0.56
VPS33A-209ENST00000544349 ARHGEF10O15013 1369 aa18.56■□□□□ 0.56
VPS33A-209ENST00000544349 RTL1A6NKG5 1358 aa18.55■□□□□ 0.56
VPS33A-209ENST00000544349 DLG5Q8TDM6 1919 aa18.54■□□□□ 0.56
VPS33A-209ENST00000544349 SLIT3O75094 1523 aa18.54■□□□□ 0.56
VPS33A-209ENST00000544349 ALS2Q96Q42 1657 aa18.53■□□□□ 0.56
VPS33A-209ENST00000544349 LMOD2Q6P5Q4 547 aa18.53■□□□□ 0.56
VPS33A-209ENST00000544349 EYA1Q99502 592 aa18.53■□□□□ 0.56
VPS33A-209ENST00000544349 IGSF1Q8N6C5 1336 aa18.53■□□□□ 0.56
VPS33A-209ENST00000544349 GCP02774 474 aa18.52■□□□□ 0.56
VPS33A-209ENST00000544349 IP6K1Q92551 441 aa18.52■□□□□ 0.56
VPS33A-209ENST00000544349 USP19O94966 1318 aa18.52■□□□□ 0.56
VPS33A-209ENST00000544349 NPHP3Q7Z494 1330 aa18.52■□□□□ 0.55
VPS33A-209ENST00000544349 KDRP35968 1356 aa18.52■□□□□ 0.55
VPS33A-209ENST00000544349 PHRF1Q9P1Y6 1649 aaKnown RBP18.51■□□□□ 0.55
VPS33A-209ENST00000544349 SKAP1Q86WV1 359 aa18.51■□□□□ 0.55
VPS33A-209ENST00000544349 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.51■□□□□ 0.55
VPS33A-209ENST00000544349 DDX17Q92841 729 aaKnown RBP18.51■□□□□ 0.55
VPS33A-209ENST00000544349 LMOD3Q0VAK6 560 aa18.5■□□□□ 0.55
VPS33A-209ENST00000544349 ERICH6Q7L0X2 663 aa18.5■□□□□ 0.55
VPS33A-209ENST00000544349 BCAR3O75815 825 aa18.5■□□□□ 0.55
VPS33A-209ENST00000544349 TSR2Q969E8 191 aaKnown RBP18.5■□□□□ 0.55
VPS33A-209ENST00000544349 CALD1Q05682 793 aaKnown RBP18.49■□□□□ 0.55
VPS33A-209ENST00000544349 ARHGEF25Q86VW2 580 aa18.49■□□□□ 0.55
VPS33A-209ENST00000544349 CT47B1P0C2W7 299 aaPredicted RBP18.47■□□□□ 0.55
VPS33A-209ENST00000544349 RARSP54136 660 aaKnown RBP18.47■□□□□ 0.55
VPS33A-209ENST00000544349 BRINP3Q76B58 766 aa18.47■□□□□ 0.55
VPS33A-209ENST00000544349 LTV1Q96GA3 475 aaPredicted RBP18.47■□□□□ 0.55
VPS33A-209ENST00000544349 PXDNQ92626 1479 aa18.47■□□□□ 0.55
VPS33A-209ENST00000544349 THUMPD2Q9BTF0 503 aaKnown RBP18.47■□□□□ 0.55
VPS33A-209ENST00000544349 PLEKHG5O94827 1062 aa18.46■□□□□ 0.55
VPS33A-209ENST00000544349 EXOSC9Q06265 439 aaKnown RBP18.46■□□□□ 0.55
VPS33A-209ENST00000544349 SLAIN2Q9P270 581 aa18.46■□□□□ 0.55
VPS33A-209ENST00000544349 MED1Q15648 1581 aaPredicted RBP18.46■□□□□ 0.55
VPS33A-209ENST00000544349 ZBTB7CA1YPR0 619 aa18.46■□□□□ 0.55
VPS33A-209ENST00000544349 TNS3Q68CZ2 1445 aa18.45■□□□□ 0.54
VPS33A-209ENST00000544349 FAM83GA6ND36 823 aa18.45■□□□□ 0.54
VPS33A-209ENST00000544349 TCERG1O14776 1098 aaKnown RBP18.45■□□□□ 0.54
VPS33A-209ENST00000544349 IFT57Q9NWB7 429 aa18.44■□□□□ 0.54
VPS33A-209ENST00000544349 ZNF853P0CG23 659 aa18.44■□□□□ 0.54
VPS33A-209ENST00000544349 GNAI1P63096 354 aa18.44■□□□□ 0.54
VPS33A-209ENST00000544349 NOP58Q9Y2X3 529 aaKnown RBP18.44■□□□□ 0.54
VPS33A-209ENST00000544349 SPATA31A3Q5VYP0 1347 aa18.44■□□□□ 0.54
VPS33A-209ENST00000544349 KDM2BQ8NHM5 1336 aa18.44■□□□□ 0.54
VPS33A-209ENST00000544349 MTHFSDQ2M296 383 aaKnown RBP18.43■□□□□ 0.54
VPS33A-209ENST00000544349 LAS1LQ9Y4W2 734 aaKnown RBP18.43■□□□□ 0.54
VPS33A-209ENST00000544349 DCTN1Q14203 1278 aa18.43■□□□□ 0.54
VPS33A-209ENST00000544349 ANP32AP39687 249 aaKnown RBP18.41■□□□□ 0.54
VPS33A-209ENST00000544349 CFAP44Q96MT7 982 aa18.41■□□□□ 0.54
VPS33A-209ENST00000544349 PDE4AP27815 886 aa18.41■□□□□ 0.54
VPS33A-209ENST00000544349 NBPF6Q5VWK0 638 aa18.41■□□□□ 0.54
VPS33A-209ENST00000544349 GAS2L2Q8NHY3 880 aa18.41■□□□□ 0.54
VPS33A-209ENST00000544349 NBPF4Q96M43 638 aa18.41■□□□□ 0.54
VPS33A-209ENST00000544349 RGPD2P0DJD1 1756 aa18.4■□□□□ 0.54
VPS33A-209ENST00000544349 FBXO41Q8TF61 875 aa18.4■□□□□ 0.54
VPS33A-209ENST00000544349 USHBP1Q8N6Y0 703 aa18.4■□□□□ 0.54
VPS33A-209ENST00000544349 MBIPQ9NS73 344 aa18.4■□□□□ 0.54
VPS33A-209ENST00000544349 SOS2Q07890 1332 aaPredicted RBP18.39■□□□□ 0.54
VPS33A-209ENST00000544349 ZC3H6P61129 1189 aaKnown RBP18.39■□□□□ 0.53
VPS33A-209ENST00000544349 PDE3AQ14432 1141 aa18.39■□□□□ 0.53
VPS33A-209ENST00000544349 CRYBG1Q9Y4K1 1723 aa18.39■□□□□ 0.53
VPS33A-209ENST00000544349 MCM10Q7L590 875 aa18.38■□□□□ 0.53
VPS33A-209ENST00000544349 IPO9Q96P70 1041 aaKnown RBP18.38■□□□□ 0.53
VPS33A-209ENST00000544349 BCL2L13Q9BXK5 485 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms