RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 PRAM1Q96QH2 718 aa17.2■□□□□ 0.34
VPS33A-208ENST00000543633 MAP2P11137 1827 aaKnown RBP17.19■□□□□ 0.34
VPS33A-208ENST00000543633 TRAK2O60296 914 aa17.19■□□□□ 0.34
VPS33A-208ENST00000543633 MRE11P49959 708 aa17.19■□□□□ 0.34
VPS33A-208ENST00000543633 NUTM2DQ5VT03 806 aaPredicted RBP17.19■□□□□ 0.34
VPS33A-208ENST00000543633 CFAP44Q96MT7 982 aa17.19■□□□□ 0.34
VPS33A-208ENST00000543633 MINK1Q8N4C8 1332 aaPredicted RBP17.19■□□□□ 0.34
VPS33A-208ENST00000543633 CEBPAP49715 358 aaPredicted RBP17.18■□□□□ 0.34
VPS33A-208ENST00000543633 SAFB2Q14151 953 aaKnown RBP eCLIP17.18■□□□□ 0.34
VPS33A-208ENST00000543633 NFE2L2Q16236 605 aa17.18■□□□□ 0.34
VPS33A-208ENST00000543633 STK26Q9P289 416 aa17.18■□□□□ 0.34
VPS33A-208ENST00000543633 ABCC4O15439 1325 aa17.17■□□□□ 0.34
VPS33A-208ENST00000543633 XRCC6P12956 609 aaKnown RBP eCLIP17.17■□□□□ 0.34
VPS33A-208ENST00000543633 IFT57Q9NWB7 429 aa17.17■□□□□ 0.34
VPS33A-208ENST00000543633 EDC4Q6P2E9 1401 aaKnown RBP17.17■□□□□ 0.34
VPS33A-208ENST00000543633 AATKQ6ZMQ8 1374 aa17.16■□□□□ 0.34
VPS33A-208ENST00000543633 GNAI1P63096 354 aa17.16■□□□□ 0.34
VPS33A-208ENST00000543633 MON2Q7Z3U7 1717 aa17.16■□□□□ 0.34
VPS33A-208ENST00000543633 ZBTB7BO15156 539 aaPredicted RBP17.16■□□□□ 0.34
VPS33A-208ENST00000543633 MRPL50Q8N5N7 158 aaKnown RBP17.16■□□□□ 0.34
VPS33A-208ENST00000543633 CDK19Q9BWU1 502 aa17.16■□□□□ 0.34
VPS33A-208ENST00000543633 STAG3Q9UJ98 1225 aa17.16■□□□□ 0.34
VPS33A-208ENST00000543633 DLG5Q8TDM6 1919 aa17.16■□□□□ 0.34
VPS33A-208ENST00000543633 UBR1Q8IWV7 1749 aa17.15■□□□□ 0.34
VPS33A-208ENST00000543633 ADAMTSL3P82987 1691 aa17.15■□□□□ 0.34
VPS33A-208ENST00000543633 PRKAR2BP31323 418 aa17.15■□□□□ 0.34
VPS33A-208ENST00000543633 LMOD3Q0VAK6 560 aa17.15■□□□□ 0.34
VPS33A-208ENST00000543633 GBP4Q96PP9 640 aa17.15■□□□□ 0.34
VPS33A-208ENST00000543633 LNPKQ9C0E8 428 aa17.15■□□□□ 0.34
VPS33A-208ENST00000543633 KNDC1Q76NI1 1749 aa17.15■□□□□ 0.34
VPS33A-208ENST00000543633 SKOR2Q2VWA4 1001 aaPredicted RBP17.14■□□□□ 0.34
VPS33A-208ENST00000543633 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.14■□□□□ 0.34
VPS33A-208ENST00000543633 NRKQ7Z2Y5 1582 aa17.14■□□□□ 0.33
VPS33A-208ENST00000543633 VAMP4O75379 141 aa17.14■□□□□ 0.33
VPS33A-208ENST00000543633 ZNF853P0CG23 659 aa17.14■□□□□ 0.33
VPS33A-208ENST00000543633 CPSF1Q10570 1443 aaKnown RBP17.14■□□□□ 0.33
VPS33A-208ENST00000543633 RIMS2Q9UQ26 1411 aa17.14■□□□□ 0.33
VPS33A-208ENST00000543633 POLKQ9UBT6 870 aa17.13■□□□□ 0.33
VPS33A-208ENST00000543633 RAB3GAP1Q15042 981 aa17.13■□□□□ 0.33
VPS33A-208ENST00000543633 SPRYD3Q8NCJ5 442 aa17.13■□□□□ 0.33
VPS33A-208ENST00000543633 RRAGDQ9NQL2 400 aaPredicted RBP17.13■□□□□ 0.33
VPS33A-208ENST00000543633 HSP90AB1P08238 724 aaKnown RBP17.12■□□□□ 0.33
VPS33A-208ENST00000543633 AKAP12Q02952 1782 aa17.12■□□□□ 0.33
VPS33A-208ENST00000543633 API5Q9BZZ5 524 aaKnown RBP17.11■□□□□ 0.33
VPS33A-208ENST00000543633 CABP1Q9NZU7 370 aa17.11■□□□□ 0.33
VPS33A-208ENST00000543633 RIMS1Q86UR5 1692 aaKnown RBP17.11■□□□□ 0.33
VPS33A-208ENST00000543633 ITSN1Q15811 1721 aa17.1■□□□□ 0.33
VPS33A-208ENST00000543633 CLCN1P35523 988 aa17.1■□□□□ 0.33
VPS33A-208ENST00000543633 CLEC17AQ6ZS10 378 aa17.1■□□□□ 0.33
VPS33A-208ENST00000543633 KIF2CQ99661 725 aa17.1■□□□□ 0.33
VPS33A-208ENST00000543633 TMEM2Q9UHN6 1383 aa17.09■□□□□ 0.33
VPS33A-208ENST00000543633 K7ELQ4 463 aaPredicted RBP17.09■□□□□ 0.33
VPS33A-208ENST00000543633 CDC45O75419 566 aa17.09■□□□□ 0.33
VPS33A-208ENST00000543633 ANKRD45Q5TZF3 282 aa17.09■□□□□ 0.33
VPS33A-208ENST00000543633 TNPO1Q92973 898 aaKnown RBP17.09■□□□□ 0.33
VPS33A-208ENST00000543633 GRPEL1Q9HAV7 217 aa17.09■□□□□ 0.33
VPS33A-208ENST00000543633 PRKCSHP14314 528 aaPredicted RBP17.08■□□□□ 0.33
VPS33A-208ENST00000543633 IL13P35225 146 aa17.08■□□□□ 0.33
VPS33A-208ENST00000543633 TBC1D9Q6ZT07 1266 aa17.08■□□□□ 0.33
VPS33A-208ENST00000543633 IBTKQ9P2D0 1353 aaPredicted RBP17.08■□□□□ 0.32
VPS33A-208ENST00000543633 HAP1P54257 671 aaPredicted RBP17.08■□□□□ 0.32
VPS33A-208ENST00000543633 NRXN3Q9Y4C0 1643 aa17.07■□□□□ 0.32
VPS33A-208ENST00000543633 GZF1Q9H116 711 aaPredicted RBP17.06■□□□□ 0.32
VPS33A-208ENST00000543633 MBIPQ9NS73 344 aa17.06■□□□□ 0.32
VPS33A-208ENST00000543633 TWISTNBQ3B726 338 aaPredicted RBP17.06■□□□□ 0.32
VPS33A-208ENST00000543633 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.06■□□□□ 0.32
VPS33A-208ENST00000543633 CPS1P31327 1500 aa17.05■□□□□ 0.32
VPS33A-208ENST00000543633 SIRT2Q8IXJ6 389 aa17.05■□□□□ 0.32
VPS33A-208ENST00000543633 PHACTR3Q96KR7 559 aa17.05■□□□□ 0.32
VPS33A-208ENST00000543633 PANK2Q9BZ23 570 aa17.04■□□□□ 0.32
VPS33A-208ENST00000543633 TECPR2O15040 1411 aa17.04■□□□□ 0.32
VPS33A-208ENST00000543633 SENP3Q9H4L4 574 aaPredicted RBP17.04■□□□□ 0.32
VPS33A-208ENST00000543633 ARHGAP23Q9P227 1491 aa17.04■□□□□ 0.32
VPS33A-208ENST00000543633 SLIT1O75093 1534 aa17.03■□□□□ 0.32
VPS33A-208ENST00000543633 GOLGA6L22H0YM25 854 aa17.03■□□□□ 0.32
VPS33A-208ENST00000543633 RABEP1Q15276 862 aa17.03■□□□□ 0.32
VPS33A-208ENST00000543633 PLPPR3Q6T4P5 718 aa17.03■□□□□ 0.32
VPS33A-208ENST00000543633 TSPYL6Q8N831 410 aa17.03■□□□□ 0.32
VPS33A-208ENST00000543633 INTS3Q68E01 1043 aaKnown RBP17.03■□□□□ 0.32
VPS33A-208ENST00000543633 HSP90AA1P07900 732 aaKnown RBP17.02■□□□□ 0.32
VPS33A-208ENST00000543633 HDGFP51858 240 aaKnown RBP17.02■□□□□ 0.32
VPS33A-208ENST00000543633 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.02■□□□□ 0.32
VPS33A-208ENST00000543633 SIRT1Q96EB6 747 aa17.02■□□□□ 0.32
VPS33A-208ENST00000543633 DCTPP1Q9H773 170 aa17.02■□□□□ 0.32
VPS33A-208ENST00000543633 ATP10DQ9P241 1426 aa17.01■□□□□ 0.31
VPS33A-208ENST00000543633 KIAA0232Q92628 1395 aa17.01■□□□□ 0.31
VPS33A-208ENST00000543633 HMOX1P09601 288 aa17.01■□□□□ 0.31
VPS33A-208ENST00000543633 LTKP29376 864 aa17.01■□□□□ 0.31
VPS33A-208ENST00000543633 EMILIN1Q9Y6C2 1016 aa17.01■□□□□ 0.31
VPS33A-208ENST00000543633 CEP170BQ9Y4F5 1589 aaPredicted RBP17■□□□□ 0.31
VPS33A-208ENST00000543633 NALCNQ8IZF0 1738 aa17■□□□□ 0.31
VPS33A-208ENST00000543633 WASLO00401 505 aaPredicted RBP17■□□□□ 0.31
VPS33A-208ENST00000543633 C1orf115Q9H7X2 142 aa17■□□□□ 0.31
VPS33A-208ENST00000543633 RGPD1P0DJD0 1748 aa17■□□□□ 0.31
VPS33A-208ENST00000543633 TTC22Q5TAA0 569 aa16.99■□□□□ 0.31
VPS33A-208ENST00000543633 PLEKHM2Q8IWE5 1019 aa16.99■□□□□ 0.31
VPS33A-208ENST00000543633 RGS12O14924 1447 aa16.99■□□□□ 0.31
VPS33A-208ENST00000543633 GSPT1P15170 499 aaKnown RBP16.99■□□□□ 0.31
VPS33A-208ENST00000543633 RPAP2Q8IXW5 612 aaPredicted RBP16.99■□□□□ 0.31
VPS33A-208ENST00000543633 ANKRD44Q8N8A2 993 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms