RNA–Protein interactions for RNA: ENST00000543555.5

MSH2-206, Transcript of mutS homolog 2, humanhuman

TSL 2 BASIC

Gene MSH2, Length 3,024 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-206ENST00000543555 NFE2L2Q16236 605 aa17.82■□□□□ 0.44
MSH2-206ENST00000543555 PHACTR3Q96KR7 559 aa17.82■□□□□ 0.44
MSH2-206ENST00000543555 FTSJ3Q8IY81 847 aaKnown RBP17.82■□□□□ 0.44
MSH2-206ENST00000543555 C14orf37Q86TY3 774 aa17.81■□□□□ 0.44
MSH2-206ENST00000543555 NRKQ7Z2Y5 1582 aa17.81■□□□□ 0.44
MSH2-206ENST00000543555 RRS1Q15050 365 aaKnown RBP17.81■□□□□ 0.44
MSH2-206ENST00000543555 NPHP4O75161 1426 aaPredicted RBP17.8■□□□□ 0.44
MSH2-206ENST00000543555 PLEKHG3A1L390 1219 aa17.8■□□□□ 0.44
MSH2-206ENST00000543555 TRIM27P14373 513 aa17.8■□□□□ 0.44
MSH2-206ENST00000543555 TTC21BQ7Z4L5 1316 aa17.79■□□□□ 0.44
MSH2-206ENST00000543555 LMTK3Q96Q04 1460 aa17.79■□□□□ 0.44
MSH2-206ENST00000543555 ACEP12821 1306 aa17.79■□□□□ 0.44
MSH2-206ENST00000543555 ATF7IPQ6VMQ6 1270 aa17.78■□□□□ 0.44
MSH2-206ENST00000543555 DDRGK1Q96HY6 314 aa17.78■□□□□ 0.44
MSH2-206ENST00000543555 CALD1Q05682 793 aaKnown RBP17.78■□□□□ 0.44
MSH2-206ENST00000543555 USP6P35125 1406 aa17.77■□□□□ 0.44
MSH2-206ENST00000543555 ALDH1L2Q3SY69 923 aa17.77■□□□□ 0.44
MSH2-206ENST00000543555 RWDD1Q9H446 243 aaPredicted RBP17.77■□□□□ 0.44
MSH2-206ENST00000543555 NOB1Q9ULX3 412 aaKnown RBP17.77■□□□□ 0.44
MSH2-206ENST00000543555 KIF16BQ96L93 1317 aa17.77■□□□□ 0.44
MSH2-206ENST00000543555 ZNF142P52746 1687 aaPredicted RBP17.77■□□□□ 0.43
MSH2-206ENST00000543555 OVOS2A0A0J9YW53 1432 aa17.77■□□□□ 0.43
MSH2-206ENST00000543555 OVOS2Q6IE36 1432 aa17.77■□□□□ 0.43
MSH2-206ENST00000543555 PTCH1Q13635 1447 aa17.76■□□□□ 0.43
MSH2-206ENST00000543555 LAS1LQ9Y4W2 734 aaKnown RBP17.75■□□□□ 0.43
MSH2-206ENST00000543555 ZNF428Q96B54 188 aa17.75■□□□□ 0.43
MSH2-206ENST00000543555 THUMPD2Q9BTF0 503 aaKnown RBP17.75■□□□□ 0.43
MSH2-206ENST00000543555 DDX19BQ9UMR2 479 aa17.75■□□□□ 0.43
MSH2-206ENST00000543555 IPO8O15397 1037 aaKnown RBP17.74■□□□□ 0.43
MSH2-206ENST00000543555 PLEKHG5O94827 1062 aa17.74■□□□□ 0.43
MSH2-206ENST00000543555 IFT57Q9NWB7 429 aa17.74■□□□□ 0.43
MSH2-206ENST00000543555 PROSER2Q86WR7 435 aaPredicted RBP17.74■□□□□ 0.43
MSH2-206ENST00000543555 DIP2AQ14689 1571 aa17.74■□□□□ 0.43
MSH2-206ENST00000543555 GNAI1P63096 354 aa17.73■□□□□ 0.43
MSH2-206ENST00000543555 LMOD3Q0VAK6 560 aa17.73■□□□□ 0.43
MSH2-206ENST00000543555 ITPRIPQ8IWB1 547 aa17.73■□□□□ 0.43
MSH2-206ENST00000543555 VIRMAQ69YN4 1812 aaKnown RBP17.73■□□□□ 0.43
MSH2-206ENST00000543555 SSH2Q76I76 1423 aa17.72■□□□□ 0.43
MSH2-206ENST00000543555 ZNF335Q9H4Z2 1342 aaPredicted RBP17.72■□□□□ 0.43
MSH2-206ENST00000543555 ZNF853P0CG23 659 aa17.72■□□□□ 0.43
MSH2-206ENST00000543555 PDZRN3Q9UPQ7 1066 aa17.72■□□□□ 0.43
MSH2-206ENST00000543555 NALCNQ8IZF0 1738 aa17.72■□□□□ 0.43
MSH2-206ENST00000543555 BRPF1P55201 1214 aaPredicted RBP17.72■□□□□ 0.43
MSH2-206ENST00000543555 NBR1Q14596 966 aa17.72■□□□□ 0.43
MSH2-206ENST00000543555 TMEM57Q8N5G2 664 aa17.72■□□□□ 0.43
MSH2-206ENST00000543555 EIF4A2Q14240 407 aaKnown RBP17.72■□□□□ 0.43
MSH2-206ENST00000543555 USP31Q70CQ4 1352 aa17.71■□□□□ 0.43
MSH2-206ENST00000543555 DLG5Q8TDM6 1919 aa17.7■□□□□ 0.42
MSH2-206ENST00000543555 VAMP4O75379 141 aa17.7■□□□□ 0.42
MSH2-206ENST00000543555 MBIPQ9NS73 344 aa17.7■□□□□ 0.42
MSH2-206ENST00000543555 HDAC1Q13547 482 aaPredicted RBP17.69■□□□□ 0.42
MSH2-206ENST00000543555 TTC21AQ8NDW8 1320 aa17.69■□□□□ 0.42
MSH2-206ENST00000543555 XRN1Q8IZH2 1706 aaKnown RBP17.69■□□□□ 0.42
MSH2-206ENST00000543555 CFAP44Q96MT7 982 aa17.69■□□□□ 0.42
MSH2-206ENST00000543555 PEAK1Q9H792 1746 aa17.68■□□□□ 0.42
MSH2-206ENST00000543555 AEBP1Q8IUX7 1158 aa17.68■□□□□ 0.42
MSH2-206ENST00000543555 TSPYL6Q8N831 410 aa17.68■□□□□ 0.42
MSH2-206ENST00000543555 ZBTB40Q9NUA8 1239 aa17.68■□□□□ 0.42
MSH2-206ENST00000543555 SULT6B1Q6IMI4 303 aa17.67■□□□□ 0.42
MSH2-206ENST00000543555 MRPL50Q8N5N7 158 aaKnown RBP17.67■□□□□ 0.42
MSH2-206ENST00000543555 FAM83GA6ND36 823 aa17.66■□□□□ 0.42
MSH2-206ENST00000543555 HSP90AB2PQ58FF8 381 aa17.66■□□□□ 0.42
MSH2-206ENST00000543555 XPCQ01831 940 aaPredicted RBP17.65■□□□□ 0.42
MSH2-206ENST00000543555 AEBP2Q6ZN18 517 aaPredicted RBP17.65■□□□□ 0.42
MSH2-206ENST00000543555 ARHGAP45Q92619 1136 aa17.65■□□□□ 0.42
MSH2-206ENST00000543555 RGPD1P0DJD0 1748 aa17.65■□□□□ 0.42
MSH2-206ENST00000543555 TWISTNBQ3B726 338 aaPredicted RBP17.65■□□□□ 0.42
MSH2-206ENST00000543555 DCTN1Q14203 1278 aa17.64■□□□□ 0.41
MSH2-206ENST00000543555 NGDNQ8NEJ9 315 aaKnown RBP17.64■□□□□ 0.41
MSH2-206ENST00000543555 USP19O94966 1318 aa17.64■□□□□ 0.41
MSH2-206ENST00000543555 ELL2O00472 640 aaPredicted RBP17.64■□□□□ 0.41
MSH2-206ENST00000543555 PIK3R4Q99570 1358 aa17.63■□□□□ 0.41
MSH2-206ENST00000543555 SOX12O15370 315 aa17.63■□□□□ 0.41
MSH2-206ENST00000543555 SEC24BO95487 1268 aa17.63■□□□□ 0.41
MSH2-206ENST00000543555 SMC5Q8IY18 1101 aa17.63■□□□□ 0.41
MSH2-206ENST00000543555 C8orf58Q8NAV2 365 aa17.63■□□□□ 0.41
MSH2-206ENST00000543555 RGPD8O14715 1765 aaPredicted RBP17.63■□□□□ 0.41
MSH2-206ENST00000543555 MAP3K19Q56UN5 1328 aa17.63■□□□□ 0.41
MSH2-206ENST00000543555 ANKARQ7Z5J8 1434 aa17.63■□□□□ 0.41
MSH2-206ENST00000543555 STRCQ7RTU9 1775 aa17.62■□□□□ 0.41
MSH2-206ENST00000543555 ORAI2Q96SN7 254 aa17.62■□□□□ 0.41
MSH2-206ENST00000543555 ESCO1Q5FWF5 840 aa17.62■□□□□ 0.41
MSH2-206ENST00000543555 DDX17Q92841 729 aaKnown RBP17.62■□□□□ 0.41
MSH2-206ENST00000543555 TMEM94Q12767 1356 aa17.61■□□□□ 0.41
MSH2-206ENST00000543555 NUTM2GQ5VZR2 741 aa17.61■□□□□ 0.41
MSH2-206ENST00000543555 DAXXQ9UER7 740 aaPredicted RBP17.61■□□□□ 0.41
MSH2-206ENST00000543555 ARHGEF10O15013 1369 aa17.61■□□□□ 0.41
MSH2-206ENST00000543555 SBNO1A3KN83 1393 aa17.61■□□□□ 0.41
MSH2-206ENST00000543555 SLC4A3P48751 1232 aa17.61■□□□□ 0.41
MSH2-206ENST00000543555 RTL5Q5HYW3 569 aaPredicted RBP17.61■□□□□ 0.41
MSH2-206ENST00000543555 PIK3C2AO00443 1686 aa17.6■□□□□ 0.41
MSH2-206ENST00000543555 FLT4P35916 1363 aa17.6■□□□□ 0.41
MSH2-206ENST00000543555 ABCC4O15439 1325 aa17.6■□□□□ 0.41
MSH2-206ENST00000543555 CHMP4BQ9H444 224 aaKnown RBP17.6■□□□□ 0.41
MSH2-206ENST00000543555 FMN2Q9NZ56 1722 aa17.6■□□□□ 0.41
MSH2-206ENST00000543555 CHD2O14647 1828 aaKnown RBP17.59■□□□□ 0.41
MSH2-206ENST00000543555 ZBTB7BO15156 539 aaPredicted RBP17.59■□□□□ 0.41
MSH2-206ENST00000543555 FOXO3O43524 673 aa17.57■□□□□ 0.4
MSH2-206ENST00000543555 MCM10Q7L590 875 aa17.57■□□□□ 0.4
MSH2-206ENST00000543555 CHL1O00533 1208 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms