RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 TET3O43151 1660 aa11.62□□□□□ -0.55
CLIP1-214ENST00000540539 GTF2A1P52655 376 aaPredicted RBP11.62□□□□□ -0.55
CLIP1-214ENST00000540539 MFAP1P55081 439 aaKnown RBP11.62□□□□□ -0.55
CLIP1-214ENST00000540539 NCAPGQ9BPX3 1015 aa11.62□□□□□ -0.55
CLIP1-214ENST00000540539 ABCC3O15438 1527 aa11.62□□□□□ -0.55
CLIP1-214ENST00000540539 IGHDP01880 384 aa11.62□□□□□ -0.55
CLIP1-214ENST00000540539 BRPF1P55201 1214 aaPredicted RBP11.62□□□□□ -0.55
CLIP1-214ENST00000540539 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.62□□□□□ -0.55
CLIP1-214ENST00000540539 DDX49Q9Y6V7 483 aaKnown RBP11.61□□□□□ -0.55
CLIP1-214ENST00000540539 LMTK2Q8IWU2 1503 aa11.61□□□□□ -0.55
CLIP1-214ENST00000540539 HSCBQ8IWL3 235 aa11.61□□□□□ -0.55
CLIP1-214ENST00000540539 SPINK5Q9NQ38 1064 aaPredicted RBP11.61□□□□□ -0.55
CLIP1-214ENST00000540539 E9PCH4 1651 aa11.6□□□□□ -0.55
CLIP1-214ENST00000540539 ZC3H13Q5T200 1668 aaKnown RBP11.6□□□□□ -0.55
CLIP1-214ENST00000540539 TICAM2Q86XR7 235 aa11.6□□□□□ -0.55
CLIP1-214ENST00000540539 TMX1Q9H3N1 280 aa11.6□□□□□ -0.55
CLIP1-214ENST00000540539 SMC4Q9NTJ3 1288 aa11.6□□□□□ -0.55
CLIP1-214ENST00000540539 CTNNA3Q9UI47 895 aa11.6□□□□□ -0.55
CLIP1-214ENST00000540539 CIZ1Q9ULV3 898 aaPredicted RBP11.6□□□□□ -0.55
CLIP1-214ENST00000540539 CEP83Q9Y592 693 aa11.6□□□□□ -0.55
CLIP1-214ENST00000540539 CFAP65Q6ZU64 1925 aaKnown RBP11.6□□□□□ -0.55
CLIP1-214ENST00000540539 DHX16O60231 1041 aaKnown RBP11.6□□□□□ -0.55
CLIP1-214ENST00000540539 RAD51AP2Q09MP3 1159 aa11.6□□□□□ -0.55
CLIP1-214ENST00000540539 DDX41Q9UJV9 622 aaKnown RBP11.6□□□□□ -0.55
CLIP1-214ENST00000540539 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.6□□□□□ -0.55
CLIP1-214ENST00000540539 EFCAB6Q5THR3 1501 aa11.6□□□□□ -0.55
CLIP1-214ENST00000540539 EIF3AQ14152 1382 aaKnown RBP11.59□□□□□ -0.55
CLIP1-214ENST00000540539 ZSCAN23Q3MJ62 389 aa11.59□□□□□ -0.55
CLIP1-214ENST00000540539 PIBF1Q8WXW3 757 aa11.59□□□□□ -0.55
CLIP1-214ENST00000540539 CAMSAP1Q5T5Y3 1602 aa11.59□□□□□ -0.55
CLIP1-214ENST00000540539 MYBBP1AQ9BQG0 1328 aaKnown RBP11.59□□□□□ -0.55
CLIP1-214ENST00000540539 PRIM1P49642 420 aaKnown RBP11.59□□□□□ -0.55
CLIP1-214ENST00000540539 L3MBTL2Q969R5 705 aa11.59□□□□□ -0.55
CLIP1-214ENST00000540539 POLR3GLQ9BT43 218 aa11.59□□□□□ -0.55
CLIP1-214ENST00000540539 CLTCQ00610 1675 aaKnown RBP11.59□□□□□ -0.55
CLIP1-214ENST00000540539 ANKRD30BQ9BXX2 1392 aa11.58□□□□□ -0.56
CLIP1-214ENST00000540539 NOLC1Q14978 699 aaKnown RBP eCLIP11.58□□□□□ -0.56
CLIP1-214ENST00000540539 ESF1Q9H501 851 aaKnown RBP11.58□□□□□ -0.56
CLIP1-214ENST00000540539 MCCP23508 829 aa11.58□□□□□ -0.56
CLIP1-214ENST00000540539 FKBP5Q13451 457 aaPredicted RBP11.58□□□□□ -0.56
CLIP1-214ENST00000540539 SMC5Q8IY18 1101 aa11.58□□□□□ -0.56
CLIP1-214ENST00000540539 CEP120Q8N960 986 aa11.58□□□□□ -0.56
CLIP1-214ENST00000540539 IRF6O14896 467 aa11.57□□□□□ -0.56
CLIP1-214ENST00000540539 CTIFO43310 598 aaKnown RBP11.57□□□□□ -0.56
CLIP1-214ENST00000540539 NBPF8Q3BBV2 869 aa11.57□□□□□ -0.56
CLIP1-214ENST00000540539 ICE2Q659A1 982 aa11.57□□□□□ -0.56
CLIP1-214ENST00000540539 C22orf23Q9BZE7 217 aa11.57□□□□□ -0.56
CLIP1-214ENST00000540539 MORC2Q9Y6X9 1032 aaPredicted RBP11.57□□□□□ -0.56
CLIP1-214ENST00000540539 RIOK3O14730 519 aaKnown RBP11.57□□□□□ -0.56
CLIP1-214ENST00000540539 CCDC172P0C7W6 258 aa11.57□□□□□ -0.56
CLIP1-214ENST00000540539 CAVIN1Q6NZI2 390 aaKnown RBP11.57□□□□□ -0.56
CLIP1-214ENST00000540539 CCDC144AA2RUR9 1427 aa11.56□□□□□ -0.56
CLIP1-214ENST00000540539 NPATQ14207 1427 aa11.56□□□□□ -0.56
CLIP1-214ENST00000540539 HNRNPH2P55795 449 aaKnown RBP11.56□□□□□ -0.56
CLIP1-214ENST00000540539 C17orf53Q8N3J3 647 aaPredicted RBP11.56□□□□□ -0.56
CLIP1-214ENST00000540539 GOLGA6L22H0YM25 854 aa11.56□□□□□ -0.56
CLIP1-214ENST00000540539 RPRD2Q5VT52 1461 aaKnown RBP11.56□□□□□ -0.56
CLIP1-214ENST00000540539 FER1L4A9Z1Z3 1794 aa11.56□□□□□ -0.56
CLIP1-214ENST00000540539 SATB1Q01826 763 aa11.55□□□□□ -0.56
CLIP1-214ENST00000540539 FBXO3Q9UK99 471 aa11.55□□□□□ -0.56
CLIP1-214ENST00000540539 ARHGAP31Q2M1Z3 1444 aa11.55□□□□□ -0.56
CLIP1-214ENST00000540539 PLA2R1Q13018 1463 aa11.55□□□□□ -0.56
CLIP1-214ENST00000540539 NCBP1Q09161 790 aaKnown RBP11.55□□□□□ -0.56
CLIP1-214ENST00000540539 RASSF4Q9H2L5 321 aa11.55□□□□□ -0.56
CLIP1-214ENST00000540539 SPHKAPQ2M3C7 1700 aa11.55□□□□□ -0.56
CLIP1-214ENST00000540539 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.54□□□□□ -0.56
CLIP1-214ENST00000540539 SPTLC3Q9NUV7 552 aa11.54□□□□□ -0.56
CLIP1-214ENST00000540539 CCDC9Q9Y3X0 531 aaKnown RBP11.54□□□□□ -0.56
CLIP1-214ENST00000540539 GUCY2CP25092 1073 aa11.54□□□□□ -0.56
CLIP1-214ENST00000540539 SSFA2P28290 1259 aa11.54□□□□□ -0.56
CLIP1-214ENST00000540539 NBPF20Q3BBV1 942 aa11.54□□□□□ -0.56
CLIP1-214ENST00000540539 CTR9Q6PD62 1173 aa11.54□□□□□ -0.56
CLIP1-214ENST00000540539 PLCD4Q9BRC7 762 aa11.54□□□□□ -0.56
CLIP1-214ENST00000540539 ZMYM3Q14202 1370 aa11.53□□□□□ -0.56
CLIP1-214ENST00000540539 PTPRTO14522 1441 aa11.53□□□□□ -0.56
CLIP1-214ENST00000540539 HSP90AB3PQ58FF7 597 aa11.53□□□□□ -0.56
CLIP1-214ENST00000540539 KRT222Q8N1A0 295 aa11.53□□□□□ -0.56
CLIP1-214ENST00000540539 STK26Q9P289 416 aa11.53□□□□□ -0.56
CLIP1-214ENST00000540539 NPC1L1Q9UHC9 1359 aa11.53□□□□□ -0.56
CLIP1-214ENST00000540539 GYS2P54840 703 aa11.53□□□□□ -0.56
CLIP1-214ENST00000540539 CLEC17AQ6ZS10 378 aa11.53□□□□□ -0.56
CLIP1-214ENST00000540539 GPATCH11Q8N954 259 aa11.53□□□□□ -0.56
CLIP1-214ENST00000540539 KIF18AQ8NI77 898 aa11.53□□□□□ -0.56
CLIP1-214ENST00000540539 MROH2AA6NES4 1674 aa11.53□□□□□ -0.56
CLIP1-214ENST00000540539 MADDQ8WXG6 1647 aa11.52□□□□□ -0.56
CLIP1-214ENST00000540539 DIAPH3Q9NSV4 1193 aa11.52□□□□□ -0.56
CLIP1-214ENST00000540539 BLMP54132 1417 aaPredicted RBP11.52□□□□□ -0.57
CLIP1-214ENST00000540539 ADAMTSL3P82987 1691 aa11.52□□□□□ -0.57
CLIP1-214ENST00000540539 BAG4O95429 457 aaKnown RBP11.52□□□□□ -0.57
CLIP1-214ENST00000540539 BRMS1Q9HCU9 246 aa11.52□□□□□ -0.57
CLIP1-214ENST00000540539 TOMM22Q9NS69 142 aa11.52□□□□□ -0.57
CLIP1-214ENST00000540539 TRPM2O94759 1503 aa11.52□□□□□ -0.57
CLIP1-214ENST00000540539 CYP2C19P33261 490 aa11.51□□□□□ -0.57
CLIP1-214ENST00000540539 FBXO31Q5XUX0 539 aaPredicted RBP11.51□□□□□ -0.57
CLIP1-214ENST00000540539 MPNDQ8N594 471 aa11.51□□□□□ -0.57
CLIP1-214ENST00000540539 RNF217Q8TC41 542 aa11.51□□□□□ -0.57
CLIP1-214ENST00000540539 SH3BP1Q9Y3L3 701 aa11.51□□□□□ -0.57
CLIP1-214ENST00000540539 PREX1Q8TCU6 1659 aa11.51□□□□□ -0.57
CLIP1-214ENST00000540539 SLC26A8Q96RN1 970 aa11.51□□□□□ -0.57
CLIP1-214ENST00000540539 KIF16BQ96L93 1317 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms