RNA–Protein interactions for RNA: ENST00000538333.3

LIMK1-208, Transcript of LIM domain kinase 1, humanhuman

TSL 2 BASIC

Gene LIMK1, Length 2,170 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-208ENST00000538333 NEFMP07197 916 aa17.98■□□□□ 0.47
LIMK1-208ENST00000538333 ZBTB47Q9UFB7 747 aaPredicted RBP17.98■□□□□ 0.47
LIMK1-208ENST00000538333 AMOTL2Q9Y2J4 779 aa17.98■□□□□ 0.47
LIMK1-208ENST00000538333 DZIP1LQ8IYY4 767 aaKnown RBP17.98■□□□□ 0.47
LIMK1-208ENST00000538333 PMFBP1Q8TBY8 1022 aa17.98■□□□□ 0.47
LIMK1-208ENST00000538333 TRIM27P14373 513 aa17.97■□□□□ 0.47
LIMK1-208ENST00000538333 THEMISQ8N1K5 641 aaPredicted RBP17.97■□□□□ 0.47
LIMK1-208ENST00000538333 RGPD8O14715 1765 aaPredicted RBP17.96■□□□□ 0.47
LIMK1-208ENST00000538333 PEAK1Q9H792 1746 aa17.96■□□□□ 0.46
LIMK1-208ENST00000538333 RIMS1Q86UR5 1692 aaKnown RBP17.95■□□□□ 0.46
LIMK1-208ENST00000538333 NUTM2FA1L443 756 aa17.95■□□□□ 0.46
LIMK1-208ENST00000538333 ATF7IPQ6VMQ6 1270 aa17.95■□□□□ 0.46
LIMK1-208ENST00000538333 FTSJ3Q8IY81 847 aaKnown RBP17.95■□□□□ 0.46
LIMK1-208ENST00000538333 USP31Q70CQ4 1352 aa17.95■□□□□ 0.46
LIMK1-208ENST00000538333 ALDH1L2Q3SY69 923 aa17.94■□□□□ 0.46
LIMK1-208ENST00000538333 RGPD1P0DJD0 1748 aa17.93■□□□□ 0.46
LIMK1-208ENST00000538333 ZNF853P0CG23 659 aa17.93■□□□□ 0.46
LIMK1-208ENST00000538333 PLPPR3Q6T4P5 718 aa17.93■□□□□ 0.46
LIMK1-208ENST00000538333 KIF16BQ96L93 1317 aa17.93■□□□□ 0.46
LIMK1-208ENST00000538333 BRPF1P55201 1214 aaPredicted RBP17.93■□□□□ 0.46
LIMK1-208ENST00000538333 CALD1Q05682 793 aaKnown RBP17.93■□□□□ 0.46
LIMK1-208ENST00000538333 ZNF428Q96B54 188 aa17.93■□□□□ 0.46
LIMK1-208ENST00000538333 THUMPD2Q9BTF0 503 aaKnown RBP17.93■□□□□ 0.46
LIMK1-208ENST00000538333 NOB1Q9ULX3 412 aaKnown RBP17.93■□□□□ 0.46
LIMK1-208ENST00000538333 CEP170BQ9Y4F5 1589 aaPredicted RBP17.92■□□□□ 0.46
LIMK1-208ENST00000538333 IFT57Q9NWB7 429 aa17.92■□□□□ 0.46
LIMK1-208ENST00000538333 EIF4A2Q14240 407 aaKnown RBP17.91■□□□□ 0.46
LIMK1-208ENST00000538333 GNAI1P63096 354 aa17.9■□□□□ 0.46
LIMK1-208ENST00000538333 RWDD1Q9H446 243 aaPredicted RBP17.9■□□□□ 0.46
LIMK1-208ENST00000538333 TTC21AQ8NDW8 1320 aa17.9■□□□□ 0.46
LIMK1-208ENST00000538333 LMOD3Q0VAK6 560 aa17.9■□□□□ 0.46
LIMK1-208ENST00000538333 DDX19BQ9UMR2 479 aa17.9■□□□□ 0.46
LIMK1-208ENST00000538333 FMN2Q9NZ56 1722 aa17.89■□□□□ 0.46
LIMK1-208ENST00000538333 LAS1LQ9Y4W2 734 aaKnown RBP17.89■□□□□ 0.45
LIMK1-208ENST00000538333 IPO8O15397 1037 aaKnown RBP17.89■□□□□ 0.45
LIMK1-208ENST00000538333 VAMP4O75379 141 aa17.89■□□□□ 0.45
LIMK1-208ENST00000538333 MBIPQ9NS73 344 aa17.89■□□□□ 0.45
LIMK1-208ENST00000538333 PIK3R4Q99570 1358 aa17.88■□□□□ 0.45
LIMK1-208ENST00000538333 PIK3C2AO00443 1686 aa17.88■□□□□ 0.45
LIMK1-208ENST00000538333 TMEM57Q8N5G2 664 aa17.88■□□□□ 0.45
LIMK1-208ENST00000538333 AEBP1Q8IUX7 1158 aa17.87■□□□□ 0.45
LIMK1-208ENST00000538333 ITPRIPQ8IWB1 547 aa17.87■□□□□ 0.45
LIMK1-208ENST00000538333 CFAP44Q96MT7 982 aa17.87■□□□□ 0.45
LIMK1-208ENST00000538333 PDZRN3Q9UPQ7 1066 aa17.87■□□□□ 0.45
LIMK1-208ENST00000538333 TSPYL6Q8N831 410 aa17.87■□□□□ 0.45
LIMK1-208ENST00000538333 DDRGK1Q96HY6 314 aa17.87■□□□□ 0.45
LIMK1-208ENST00000538333 ANKARQ7Z5J8 1434 aa17.86■□□□□ 0.45
LIMK1-208ENST00000538333 FAM83GA6ND36 823 aa17.86■□□□□ 0.45
LIMK1-208ENST00000538333 HDAC1Q13547 482 aaPredicted RBP17.86■□□□□ 0.45
LIMK1-208ENST00000538333 HSP90AB2PQ58FF8 381 aa17.86■□□□□ 0.45
LIMK1-208ENST00000538333 SULT6B1Q6IMI4 303 aa17.86■□□□□ 0.45
LIMK1-208ENST00000538333 ZBTB40Q9NUA8 1239 aa17.86■□□□□ 0.45
LIMK1-208ENST00000538333 KCNA6P17658 529 aa17.85■□□□□ 0.45
LIMK1-208ENST00000538333 MARF1Q9Y4F3 1742 aaKnown RBP17.85■□□□□ 0.45
LIMK1-208ENST00000538333 ZNF142P52746 1687 aaPredicted RBP17.84■□□□□ 0.45
LIMK1-208ENST00000538333 MRPL50Q8N5N7 158 aaKnown RBP17.84■□□□□ 0.45
LIMK1-208ENST00000538333 CHD2O14647 1828 aaKnown RBP17.84■□□□□ 0.45
LIMK1-208ENST00000538333 USP54Q70EL1 1684 aa17.84■□□□□ 0.45
LIMK1-208ENST00000538333 NGDNQ8NEJ9 315 aaKnown RBP17.83■□□□□ 0.45
LIMK1-208ENST00000538333 ARHGAP45Q92619 1136 aa17.83■□□□□ 0.45
LIMK1-208ENST00000538333 MAP3K19Q56UN5 1328 aa17.83■□□□□ 0.44
LIMK1-208ENST00000538333 DCTN1Q14203 1278 aa17.82■□□□□ 0.44
LIMK1-208ENST00000538333 USP19O94966 1318 aa17.82■□□□□ 0.44
LIMK1-208ENST00000538333 SBNO1A3KN83 1393 aa17.82■□□□□ 0.44
LIMK1-208ENST00000538333 ARHGEF10O15013 1369 aa17.82■□□□□ 0.44
LIMK1-208ENST00000538333 TWISTNBQ3B726 338 aaPredicted RBP17.81■□□□□ 0.44
LIMK1-208ENST00000538333 FLT4P35916 1363 aa17.81■□□□□ 0.44
LIMK1-208ENST00000538333 C8orf58Q8NAV2 365 aa17.81■□□□□ 0.44
LIMK1-208ENST00000538333 SMC5Q8IY18 1101 aa17.8■□□□□ 0.44
LIMK1-208ENST00000538333 ELL2O00472 640 aaPredicted RBP17.79■□□□□ 0.44
LIMK1-208ENST00000538333 SOX12O15370 315 aa17.79■□□□□ 0.44
LIMK1-208ENST00000538333 KDRP35968 1356 aa17.79■□□□□ 0.44
LIMK1-208ENST00000538333 ADAMTSL3P82987 1691 aa17.79■□□□□ 0.44
LIMK1-208ENST00000538333 ABCC4O15439 1325 aa17.79■□□□□ 0.44
LIMK1-208ENST00000538333 SEC24BO95487 1268 aa17.78■□□□□ 0.44
LIMK1-208ENST00000538333 NBR1Q14596 966 aa17.78■□□□□ 0.44
LIMK1-208ENST00000538333 CHL1O00533 1208 aa17.77■□□□□ 0.43
LIMK1-208ENST00000538333 ZBTB7BO15156 539 aaPredicted RBP17.77■□□□□ 0.43
LIMK1-208ENST00000538333 IGSF1Q8N6C5 1336 aa17.76■□□□□ 0.43
LIMK1-208ENST00000538333 CRB1P82279 1406 aa17.75■□□□□ 0.43
LIMK1-208ENST00000538333 SETD1BQ9UPS6 1966 aaKnown RBP17.75■□□□□ 0.43
LIMK1-208ENST00000538333 MCM10Q7L590 875 aa17.75■□□□□ 0.43
LIMK1-208ENST00000538333 ANKLE2Q86XL3 938 aa17.75■□□□□ 0.43
LIMK1-208ENST00000538333 KIF24Q5T7B8 1368 aa17.75■□□□□ 0.43
LIMK1-208ENST00000538333 KIAA0232Q92628 1395 aa17.74■□□□□ 0.43
LIMK1-208ENST00000538333 NLRP6P59044 892 aa17.74■□□□□ 0.43
LIMK1-208ENST00000538333 AMPHP49418 695 aa17.73■□□□□ 0.43
LIMK1-208ENST00000538333 NWD1Q149M9 1564 aa17.73■□□□□ 0.43
LIMK1-208ENST00000538333 EYA1Q99502 592 aa17.73■□□□□ 0.43
LIMK1-208ENST00000538333 CHMP4BQ9H444 224 aaKnown RBP17.73■□□□□ 0.43
LIMK1-208ENST00000538333 MTHFSDQ2M296 383 aaKnown RBP17.72■□□□□ 0.43
LIMK1-208ENST00000538333 KDM4FA0A1W2PPD8 638 aa17.72■□□□□ 0.43
LIMK1-208ENST00000538333 SLC4A3P48751 1232 aa17.72■□□□□ 0.43
LIMK1-208ENST00000538333 KRT24Q2M2I5 525 aa17.72■□□□□ 0.43
LIMK1-208ENST00000538333 API5Q9BZZ5 524 aaKnown RBP17.72■□□□□ 0.43
LIMK1-208ENST00000538333 NUCB1Q02818 461 aa17.71■□□□□ 0.43
LIMK1-208ENST00000538333 FOXO3O43524 673 aa17.7■□□□□ 0.42
LIMK1-208ENST00000538333 LRRC37A3O60309 1634 aa17.7■□□□□ 0.42
LIMK1-208ENST00000538333 RGS12O14924 1447 aa17.7■□□□□ 0.42
LIMK1-208ENST00000538333 HOXC9P31274 260 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms