RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 IFNLR1Q8IU57 520 aaPredicted RBP13.98□□□□□ -0.17
CLIP1-210ENST00000538120 IPO9Q96P70 1041 aaKnown RBP13.98□□□□□ -0.17
CLIP1-210ENST00000538120 TOPAZ1Q8N9V7 1692 aa13.98□□□□□ -0.17
CLIP1-210ENST00000538120 ANP32AP39687 249 aaKnown RBP13.97□□□□□ -0.17
CLIP1-210ENST00000538120 DNAJC5Q9H3Z4 198 aa13.97□□□□□ -0.17
CLIP1-210ENST00000538120 ADAMTSL3P82987 1691 aa13.97□□□□□ -0.17
CLIP1-210ENST00000538120 AATKQ6ZMQ8 1374 aa13.97□□□□□ -0.17
CLIP1-210ENST00000538120 NUTM2FA1L443 756 aa13.97□□□□□ -0.17
CLIP1-210ENST00000538120 ACEP12821 1306 aa13.96□□□□□ -0.17
CLIP1-210ENST00000538120 EMILIN1Q9Y6C2 1016 aa13.96□□□□□ -0.17
CLIP1-210ENST00000538120 XRN1Q8IZH2 1706 aaKnown RBP13.96□□□□□ -0.17
CLIP1-210ENST00000538120 BCAR3O75815 825 aa13.96□□□□□ -0.18
CLIP1-210ENST00000538120 ITSN1Q15811 1721 aa13.95□□□□□ -0.18
CLIP1-210ENST00000538120 TMPOP42166 694 aaKnown RBP13.95□□□□□ -0.18
CLIP1-210ENST00000538120 COG3Q96JB2 828 aa13.95□□□□□ -0.18
CLIP1-210ENST00000538120 TTC21BQ7Z4L5 1316 aa13.95□□□□□ -0.18
CLIP1-210ENST00000538120 NRKQ7Z2Y5 1582 aa13.95□□□□□ -0.18
CLIP1-210ENST00000538120 TRIM35Q9UPQ4 493 aa13.95□□□□□ -0.18
CLIP1-210ENST00000538120 PPM1GO15355 546 aaPredicted RBP13.94□□□□□ -0.18
CLIP1-210ENST00000538120 KCNA6P17658 529 aa13.94□□□□□ -0.18
CLIP1-210ENST00000538120 PLCD3Q8N3E9 789 aa13.94□□□□□ -0.18
CLIP1-210ENST00000538120 UBE2Q2Q8WVN8 375 aa13.94□□□□□ -0.18
CLIP1-210ENST00000538120 SSH2Q76I76 1423 aa13.94□□□□□ -0.18
CLIP1-210ENST00000538120 IL13P35225 146 aa13.93□□□□□ -0.18
CLIP1-210ENST00000538120 ZBTB47Q9UFB7 747 aaPredicted RBP13.93□□□□□ -0.18
CLIP1-210ENST00000538120 PIK3R4Q99570 1358 aa13.93□□□□□ -0.18
CLIP1-210ENST00000538120 USP6P35125 1406 aa13.93□□□□□ -0.18
CLIP1-210ENST00000538120 RSPH6AQ9H0K4 717 aa13.93□□□□□ -0.18
CLIP1-210ENST00000538120 CREBZFQ9NS37 354 aa13.93□□□□□ -0.18
CLIP1-210ENST00000538120 MAP2P11137 1827 aaKnown RBP13.93□□□□□ -0.18
CLIP1-210ENST00000538120 FCHSD2O94868 740 aa13.92□□□□□ -0.18
CLIP1-210ENST00000538120 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.92□□□□□ -0.18
CLIP1-210ENST00000538120 CDK12Q9NYV4 1490 aaPredicted RBP13.92□□□□□ -0.18
CLIP1-210ENST00000538120 RRS1Q15050 365 aaKnown RBP13.92□□□□□ -0.18
CLIP1-210ENST00000538120 ZNF142P52746 1687 aaPredicted RBP13.91□□□□□ -0.18
CLIP1-210ENST00000538120 OVOS2A0A0J9YW53 1432 aa13.91□□□□□ -0.18
CLIP1-210ENST00000538120 OVOS2Q6IE36 1432 aa13.91□□□□□ -0.18
CLIP1-210ENST00000538120 MAPK8IP3Q9UPT6 1336 aa13.91□□□□□ -0.18
CLIP1-210ENST00000538120 ANKLE2Q86XL3 938 aa13.91□□□□□ -0.18
CLIP1-210ENST00000538120 LRRC7Q96NW7 1537 aa13.91□□□□□ -0.18
CLIP1-210ENST00000538120 FXR2P51116 673 aaKnown RBP eCLIP13.9□□□□□ -0.18
CLIP1-210ENST00000538120 PMFBP1Q8TBY8 1022 aa13.9□□□□□ -0.18
CLIP1-210ENST00000538120 PNNQ9H307 717 aaKnown RBP13.9□□□□□ -0.18
CLIP1-210ENST00000538120 PRKAR2BP31323 418 aa13.89□□□□□ -0.19
CLIP1-210ENST00000538120 RARSP54136 660 aaKnown RBP13.89□□□□□ -0.19
CLIP1-210ENST00000538120 RIPK4P57078 832 aa13.89□□□□□ -0.19
CLIP1-210ENST00000538120 MYH16Q9H6N6 1097 aa13.89□□□□□ -0.19
CLIP1-210ENST00000538120 PHACTR3Q96KR7 559 aa13.88□□□□□ -0.19
CLIP1-210ENST00000538120 HMOX1P09601 288 aa13.88□□□□□ -0.19
CLIP1-210ENST00000538120 USP31Q70CQ4 1352 aa13.88□□□□□ -0.19
CLIP1-210ENST00000538120 IL16Q14005 1332 aa13.88□□□□□ -0.19
CLIP1-210ENST00000538120 ANKARQ7Z5J8 1434 aa13.87□□□□□ -0.19
CLIP1-210ENST00000538120 CHADLQ6NUI6 762 aa13.87□□□□□ -0.19
CLIP1-210ENST00000538120 SKAP1Q86WV1 359 aa13.87□□□□□ -0.19
CLIP1-210ENST00000538120 TSR2Q969E8 191 aaKnown RBP13.87□□□□□ -0.19
CLIP1-210ENST00000538120 RGPD8O14715 1765 aaPredicted RBP13.86□□□□□ -0.19
CLIP1-210ENST00000538120 VSIG10Q8N0Z9 540 aa13.86□□□□□ -0.19
CLIP1-210ENST00000538120 PIP4P2Q8N4L2 257 aa13.86□□□□□ -0.19
CLIP1-210ENST00000538120 TTC21AQ8NDW8 1320 aa13.86□□□□□ -0.19
CLIP1-210ENST00000538120 KDM2BQ8NHM5 1336 aa13.86□□□□□ -0.19
CLIP1-210ENST00000538120 PDE3AQ14432 1141 aa13.85□□□□□ -0.19
CLIP1-210ENST00000538120 RTL5Q5HYW3 569 aaPredicted RBP13.85□□□□□ -0.19
CLIP1-210ENST00000538120 CHD2O14647 1828 aaKnown RBP13.85□□□□□ -0.19
CLIP1-210ENST00000538120 NALCNQ8IZF0 1738 aa13.85□□□□□ -0.19
CLIP1-210ENST00000538120 PDE4AP27815 886 aa13.85□□□□□ -0.19
CLIP1-210ENST00000538120 MNX1P50219 401 aaPredicted RBP13.85□□□□□ -0.19
CLIP1-210ENST00000538120 NFE2L2Q16236 605 aa13.85□□□□□ -0.19
CLIP1-210ENST00000538120 NGDNQ8NEJ9 315 aaKnown RBP13.85□□□□□ -0.19
CLIP1-210ENST00000538120 FMN2Q9NZ56 1722 aa13.84□□□□□ -0.19
CLIP1-210ENST00000538120 EXOSC9Q06265 439 aaKnown RBP13.84□□□□□ -0.19
CLIP1-210ENST00000538120 EIF4A2Q14240 407 aaKnown RBP13.84□□□□□ -0.19
CLIP1-210ENST00000538120 SETD1BQ9UPS6 1966 aaKnown RBP13.83□□□□□ -0.19
CLIP1-210ENST00000538120 PEAK1Q9H792 1746 aa13.83□□□□□ -0.19
CLIP1-210ENST00000538120 LAS1LQ9Y4W2 734 aaKnown RBP13.83□□□□□ -0.2
CLIP1-210ENST00000538120 TCERG1O14776 1098 aaKnown RBP13.83□□□□□ -0.2
CLIP1-210ENST00000538120 PANK1Q8TE04 598 aa13.83□□□□□ -0.2
CLIP1-210ENST00000538120 NPHP4O75161 1426 aaPredicted RBP13.82□□□□□ -0.2
CLIP1-210ENST00000538120 CT47B1P0C2W7 299 aaPredicted RBP13.82□□□□□ -0.2
CLIP1-210ENST00000538120 RBM33Q96EV2 1170 aaKnown RBP13.82□□□□□ -0.2
CLIP1-210ENST00000538120 BCL2L13Q9BXK5 485 aa13.82□□□□□ -0.2
CLIP1-210ENST00000538120 TNNQ9UQP3 1299 aa13.82□□□□□ -0.2
CLIP1-210ENST00000538120 FRAT1Q92837 279 aaPredicted RBP13.82□□□□□ -0.2
CLIP1-210ENST00000538120 BACH2Q9BYV9 841 aa13.82□□□□□ -0.2
CLIP1-210ENST00000538120 PRKAR2AP13861 404 aaKnown RBP13.81□□□□□ -0.2
CLIP1-210ENST00000538120 HSP90AB2PQ58FF8 381 aa13.81□□□□□ -0.2
CLIP1-210ENST00000538120 PIK3C2AO00443 1686 aa13.8□□□□□ -0.2
CLIP1-210ENST00000538120 NEFMP07197 916 aa13.8□□□□□ -0.2
CLIP1-210ENST00000538120 RLBP1P12271 317 aa13.8□□□□□ -0.2
CLIP1-210ENST00000538120 AEBP1Q8IUX7 1158 aa13.8□□□□□ -0.2
CLIP1-210ENST00000538120 COG6Q9Y2V7 657 aa13.8□□□□□ -0.2
CLIP1-210ENST00000538120 MAP3K19Q56UN5 1328 aa13.8□□□□□ -0.2
CLIP1-210ENST00000538120 CANXP27824 592 aaKnown RBP13.8□□□□□ -0.2
CLIP1-210ENST00000538120 THUMPD2Q9BTF0 503 aaKnown RBP13.8□□□□□ -0.2
CLIP1-210ENST00000538120 SOX12O15370 315 aa13.79□□□□□ -0.2
CLIP1-210ENST00000538120 CENPQQ7L2Z9 268 aaPredicted RBP13.79□□□□□ -0.2
CLIP1-210ENST00000538120 PDIA4P13667 645 aaKnown RBP13.78□□□□□ -0.2
CLIP1-210ENST00000538120 SULT6B1Q6IMI4 303 aa13.78□□□□□ -0.2
CLIP1-210ENST00000538120 SSH1Q8WYL5 1049 aa13.78□□□□□ -0.2
CLIP1-210ENST00000538120 ADGRL3Q9HAR2 1447 aa13.78□□□□□ -0.2
CLIP1-210ENST00000538120 RGPD1P0DJD0 1748 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms