RNA–Protein interactions for RNA: ENST00000533390.5

AP004608.1-202, humanhuman

TSL 1 (best) BASIC

Gene AP004608.1, Length 1,863 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP004608.1-202ENST00000533390 IL16Q14005 1332 aa28.39■■■□□ 2.13
AP004608.1-202ENST00000533390 NFE2L2Q16236 605 aa28.38■■■□□ 2.13
AP004608.1-202ENST00000533390 EXOC6Q8TAG9 804 aa28.38■■■□□ 2.13
AP004608.1-202ENST00000533390 CCDC136Q96JN2 1154 aa28.38■■■□□ 2.13
AP004608.1-202ENST00000533390 ORAI2Q96SN7 254 aa28.38■■■□□ 2.13
AP004608.1-202ENST00000533390 TMEM94Q12767 1356 aa28.37■■■□□ 2.13
AP004608.1-202ENST00000533390 PHACTR3Q96KR7 559 aa28.36■■■□□ 2.13
AP004608.1-202ENST00000533390 RGPD1P0DJD0 1748 aa28.36■■■□□ 2.13
AP004608.1-202ENST00000533390 KIF24Q5T7B8 1368 aa28.36■■■□□ 2.13
AP004608.1-202ENST00000533390 C1orf167Q5SNV9 1468 aa28.36■■■□□ 2.13
AP004608.1-202ENST00000533390 ATF3P18847 181 aa28.35■■■□□ 2.13
AP004608.1-202ENST00000533390 DCCP43146 1447 aa28.35■■■□□ 2.13
AP004608.1-202ENST00000533390 STRCQ7RTU9 1775 aa28.34■■■□□ 2.13
AP004608.1-202ENST00000533390 DLG5Q8TDM6 1919 aa28.34■■■□□ 2.13
AP004608.1-202ENST00000533390 SULT6B1Q6IMI4 303 aa28.33■■■□□ 2.13
AP004608.1-202ENST00000533390 FOXO3O43524 673 aa28.32■■■□□ 2.12
AP004608.1-202ENST00000533390 ARHGEF10O15013 1369 aa28.31■■■□□ 2.12
AP004608.1-202ENST00000533390 BCAR3O75815 825 aa28.31■■■□□ 2.12
AP004608.1-202ENST00000533390 LMOD3Q0VAK6 560 aa28.31■■■□□ 2.12
AP004608.1-202ENST00000533390 FANCIQ9NVI1 1328 aa28.31■■■□□ 2.12
AP004608.1-202ENST00000533390 LTN1O94822 1766 aa28.31■■■□□ 2.12
AP004608.1-202ENST00000533390 CALD1Q05682 793 aaKnown RBP28.3■■■□□ 2.12
AP004608.1-202ENST00000533390 CRBNQ96SW2 442 aa28.3■■■□□ 2.12
AP004608.1-202ENST00000533390 CT47B1P0C2W7 299 aaPredicted RBP28.29■■■□□ 2.12
AP004608.1-202ENST00000533390 AEBP1Q8IUX7 1158 aa28.28■■■□□ 2.12
AP004608.1-202ENST00000533390 HOXC9P31274 260 aa28.27■■■□□ 2.12
AP004608.1-202ENST00000533390 TSR2Q969E8 191 aaKnown RBP28.27■■■□□ 2.12
AP004608.1-202ENST00000533390 RTL1A6NKG5 1358 aa28.27■■■□□ 2.12
AP004608.1-202ENST00000533390 MST1RQ04912 1400 aa28.27■■■□□ 2.12
AP004608.1-202ENST00000533390 TRPM3Q9HCF6 1732 aaPredicted RBP28.27■■■□□ 2.12
AP004608.1-202ENST00000533390 C20orf194Q5TEA3 1177 aa28.27■■■□□ 2.12
AP004608.1-202ENST00000533390 KCNH5Q8NCM2 988 aa28.27■■■□□ 2.12
AP004608.1-202ENST00000533390 RARSP54136 660 aaKnown RBP28.26■■■□□ 2.11
AP004608.1-202ENST00000533390 MSH6P52701 1360 aa28.25■■■□□ 2.11
AP004608.1-202ENST00000533390 CADPS2Q86UW7 1296 aa28.25■■■□□ 2.11
AP004608.1-202ENST00000533390 KRT28Q7Z3Y7 464 aa28.25■■■□□ 2.11
AP004608.1-202ENST00000533390 CANXP27824 592 aaKnown RBP28.24■■■□□ 2.11
AP004608.1-202ENST00000533390 XPCQ01831 940 aaPredicted RBP28.24■■■□□ 2.11
AP004608.1-202ENST00000533390 NFAT5O94916 1531 aa28.24■■■□□ 2.11
AP004608.1-202ENST00000533390 EXOSC9Q06265 439 aaKnown RBP28.23■■■□□ 2.11
AP004608.1-202ENST00000533390 IGSF1Q8N6C5 1336 aa28.22■■■□□ 2.11
AP004608.1-202ENST00000533390 XIRP1Q702N8 1843 aaKnown RBP28.22■■■□□ 2.11
AP004608.1-202ENST00000533390 EYA1Q99502 592 aa28.21■■■□□ 2.11
AP004608.1-202ENST00000533390 KDRP35968 1356 aa28.2■■■□□ 2.11
AP004608.1-202ENST00000533390 GNAI1P63096 354 aa28.2■■■□□ 2.1
AP004608.1-202ENST00000533390 LMOD2Q6P5Q4 547 aa28.2■■■□□ 2.1
AP004608.1-202ENST00000533390 LAS1LQ9Y4W2 734 aaKnown RBP28.19■■■□□ 2.1
AP004608.1-202ENST00000533390 SLIT3O75094 1523 aa28.19■■■□□ 2.1
AP004608.1-202ENST00000533390 PHRF1Q9P1Y6 1649 aaKnown RBP28.19■■■□□ 2.1
AP004608.1-202ENST00000533390 PDE3AQ14432 1141 aa28.19■■■□□ 2.1
AP004608.1-202ENST00000533390 IFT57Q9NWB7 429 aa28.19■■■□□ 2.1
AP004608.1-202ENST00000533390 IP6K1Q92551 441 aa28.18■■■□□ 2.1
AP004608.1-202ENST00000533390 THUMPD2Q9BTF0 503 aaKnown RBP28.17■■■□□ 2.1
AP004608.1-202ENST00000533390 FRAT1Q92837 279 aaPredicted RBP28.17■■■□□ 2.1
AP004608.1-202ENST00000533390 ALS2Q96Q42 1657 aa28.16■■■□□ 2.1
AP004608.1-202ENST00000533390 TSHZ2Q9NRE2 1034 aa28.15■■■□□ 2.1
AP004608.1-202ENST00000533390 GCP02774 474 aa28.14■■■□□ 2.1
AP004608.1-202ENST00000533390 LTV1Q96GA3 475 aaPredicted RBP28.14■■■□□ 2.1
AP004608.1-202ENST00000533390 USP19O94966 1318 aa28.14■■■□□ 2.09
AP004608.1-202ENST00000533390 BCL2L13Q9BXK5 485 aa28.13■■■□□ 2.09
AP004608.1-202ENST00000533390 NPHP3Q7Z494 1330 aa28.13■■■□□ 2.09
AP004608.1-202ENST00000533390 ZBTB7CA1YPR0 619 aa28.12■■■□□ 2.09
AP004608.1-202ENST00000533390 FAM83GA6ND36 823 aa28.12■■■□□ 2.09
AP004608.1-202ENST00000533390 CFAP44Q96MT7 982 aa28.12■■■□□ 2.09
AP004608.1-202ENST00000533390 ZNF853P0CG23 659 aa28.12■■■□□ 2.09
AP004608.1-202ENST00000533390 GAS2L2Q8NHY3 880 aa28.1■■■□□ 2.09
AP004608.1-202ENST00000533390 SMC4Q9NTJ3 1288 aa28.1■■■□□ 2.09
AP004608.1-202ENST00000533390 ZNF335Q9H4Z2 1342 aaPredicted RBP28.1■■■□□ 2.09
AP004608.1-202ENST00000533390 DCTN1Q14203 1278 aa28.1■■■□□ 2.09
AP004608.1-202ENST00000533390 ZNF428Q96B54 188 aa28.09■■■□□ 2.09
AP004608.1-202ENST00000533390 ARHGEF25Q86VW2 580 aa28.08■■■□□ 2.09
AP004608.1-202ENST00000533390 MBIPQ9NS73 344 aa28.08■■■□□ 2.09
AP004608.1-202ENST00000533390 PLEKHG5O94827 1062 aa28.08■■■□□ 2.09
AP004608.1-202ENST00000533390 MTHFSDQ2M296 383 aaKnown RBP28.08■■■□□ 2.09
AP004608.1-202ENST00000533390 ZKSCAN2Q63HK3 967 aa28.06■■■□□ 2.08
AP004608.1-202ENST00000533390 RTF1Q92541 710 aaKnown RBP28.06■■■□□ 2.08
AP004608.1-202ENST00000533390 MS4A1P11836 297 aa28.06■■■□□ 2.08
AP004608.1-202ENST00000533390 ALDH1L2Q3SY69 923 aa28.06■■■□□ 2.08
AP004608.1-202ENST00000533390 PANK1Q8TE04 598 aa28.06■■■□□ 2.08
AP004608.1-202ENST00000533390 SSH1Q8WYL5 1049 aa28.06■■■□□ 2.08
AP004608.1-202ENST00000533390 DDX17Q92841 729 aaKnown RBP28.05■■■□□ 2.08
AP004608.1-202ENST00000533390 MCM10Q7L590 875 aa28.04■■■□□ 2.08
AP004608.1-202ENST00000533390 TNS3Q68CZ2 1445 aa28.03■■■□□ 2.08
AP004608.1-202ENST00000533390 COG6Q9Y2V7 657 aa28.03■■■□□ 2.08
AP004608.1-202ENST00000533390 MED1Q15648 1581 aaPredicted RBP28.02■■■□□ 2.08
AP004608.1-202ENST00000533390 RGPD2P0DJD1 1756 aa28.02■■■□□ 2.08
AP004608.1-202ENST00000533390 KIF16BQ96L93 1317 aa28.02■■■□□ 2.08
AP004608.1-202ENST00000533390 PXDNQ92626 1479 aa28.01■■■□□ 2.08
AP004608.1-202ENST00000533390 HTATSF1O43719 755 aaKnown RBP28.01■■■□□ 2.07
AP004608.1-202ENST00000533390 USHBP1Q8N6Y0 703 aa28■■■□□ 2.07
AP004608.1-202ENST00000533390 VAMP4O75379 141 aa28■■■□□ 2.07
AP004608.1-202ENST00000533390 NBPF6Q5VWK0 638 aa28■■■□□ 2.07
AP004608.1-202ENST00000533390 FTSJ3Q8IY81 847 aaKnown RBP28■■■□□ 2.07
AP004608.1-202ENST00000533390 NBPF4Q96M43 638 aa28■■■□□ 2.07
AP004608.1-202ENST00000533390 AAMPQ13685 434 aa27.99■■■□□ 2.07
AP004608.1-202ENST00000533390 BRINP3Q76B58 766 aa27.99■■■□□ 2.07
AP004608.1-202ENST00000533390 IPO8O15397 1037 aaKnown RBP27.98■■■□□ 2.07
AP004608.1-202ENST00000533390 TWISTNBQ3B726 338 aaPredicted RBP27.98■■■□□ 2.07
AP004608.1-202ENST00000533390 DZIP1LQ8IYY4 767 aaKnown RBP27.98■■■□□ 2.07
AP004608.1-202ENST00000533390 GNAT3A8MTJ3 354 aa27.98■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms