RNA–Protein interactions for RNA: ENST00000532542.1

TRIM3-211, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 4,419 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-211ENST00000532542 OS9Q13438 667 aaPredicted RBP13.92□□□□□ -0.18
TRIM3-211ENST00000532542 RSPH6AQ9H0K4 717 aa13.92□□□□□ -0.18
TRIM3-211ENST00000532542 ZNF521Q96K83 1311 aa13.92□□□□□ -0.18
TRIM3-211ENST00000532542 EIF4A2Q14240 407 aaKnown RBP13.91□□□□□ -0.18
TRIM3-211ENST00000532542 ANKRD45Q5TZF3 282 aa13.91□□□□□ -0.18
TRIM3-211ENST00000532542 REREQ9P2R6 1566 aa13.91□□□□□ -0.18
TRIM3-211ENST00000532542 A0A0G2JS52 829 aa13.91□□□□□ -0.18
TRIM3-211ENST00000532542 APBB1O00213 710 aa13.91□□□□□ -0.18
TRIM3-211ENST00000532542 TULP4Q9NRJ4 1543 aa13.91□□□□□ -0.18
TRIM3-211ENST00000532542 NLRP2Q9NX02 1062 aa13.91□□□□□ -0.18
TRIM3-211ENST00000532542 FKBP5Q13451 457 aaPredicted RBP13.9□□□□□ -0.18
TRIM3-211ENST00000532542 SPATA31D1Q6ZQQ2 1576 aa13.9□□□□□ -0.18
TRIM3-211ENST00000532542 IL13P35225 146 aa13.9□□□□□ -0.18
TRIM3-211ENST00000532542 CCDC30Q5VVM6 783 aa13.9□□□□□ -0.18
TRIM3-211ENST00000532542 FLT4P35916 1363 aa13.9□□□□□ -0.18
TRIM3-211ENST00000532542 PTPRMP28827 1452 aa13.9□□□□□ -0.18
TRIM3-211ENST00000532542 XPCQ01831 940 aaPredicted RBP13.9□□□□□ -0.18
TRIM3-211ENST00000532542 DCTN1Q14203 1278 aa13.9□□□□□ -0.18
TRIM3-211ENST00000532542 GNAT3A8MTJ3 354 aa13.89□□□□□ -0.19
TRIM3-211ENST00000532542 MCM10Q7L590 875 aa13.89□□□□□ -0.19
TRIM3-211ENST00000532542 TMEM131LA2VDJ0 1609 aa13.89□□□□□ -0.19
TRIM3-211ENST00000532542 BACH2Q9BYV9 841 aa13.89□□□□□ -0.19
TRIM3-211ENST00000532542 DLC1Q96QB1 1528 aa13.88□□□□□ -0.19
TRIM3-211ENST00000532542 EIF2S2P20042 333 aaKnown RBP13.88□□□□□ -0.19
TRIM3-211ENST00000532542 AATKQ6ZMQ8 1374 aa13.88□□□□□ -0.19
TRIM3-211ENST00000532542 TRMT2AQ8IZ69 625 aaKnown RBP13.88□□□□□ -0.19
TRIM3-211ENST00000532542 DMRT2Q9Y5R5 561 aa13.88□□□□□ -0.19
TRIM3-211ENST00000532542 TMEM57Q8N5G2 664 aa13.87□□□□□ -0.19
TRIM3-211ENST00000532542 PHACTR3Q96KR7 559 aa13.87□□□□□ -0.19
TRIM3-211ENST00000532542 PDZRN3Q9UPQ7 1066 aa13.87□□□□□ -0.19
TRIM3-211ENST00000532542 TRIM27P14373 513 aa13.87□□□□□ -0.19
TRIM3-211ENST00000532542 ZNF530Q6P9A1 599 aaPredicted RBP13.87□□□□□ -0.19
TRIM3-211ENST00000532542 NECTIN2Q92692 538 aa13.87□□□□□ -0.19
TRIM3-211ENST00000532542 PIK3R4Q99570 1358 aa13.87□□□□□ -0.19
TRIM3-211ENST00000532542 SLC4A2P04920 1241 aa13.87□□□□□ -0.19
TRIM3-211ENST00000532542 MBIPQ9NS73 344 aa13.87□□□□□ -0.19
TRIM3-211ENST00000532542 MAP3K19Q56UN5 1328 aa13.86□□□□□ -0.19
TRIM3-211ENST00000532542 TRIM35Q9UPQ4 493 aa13.86□□□□□ -0.19
TRIM3-211ENST00000532542 MFAP1P55081 439 aaKnown RBP13.86□□□□□ -0.19
TRIM3-211ENST00000532542 KRT28Q7Z3Y7 464 aa13.86□□□□□ -0.19
TRIM3-211ENST00000532542 AEBP1Q8IUX7 1158 aa13.86□□□□□ -0.19
TRIM3-211ENST00000532542 ARXQ96QS3 562 aa13.86□□□□□ -0.19
TRIM3-211ENST00000532542 PRR36Q9H6K5 1346 aa13.85□□□□□ -0.19
TRIM3-211ENST00000532542 CADPS2Q86UW7 1296 aa13.85□□□□□ -0.19
TRIM3-211ENST00000532542 FAM83GA6ND36 823 aa13.85□□□□□ -0.19
TRIM3-211ENST00000532542 HSCBQ8IWL3 235 aa13.85□□□□□ -0.19
TRIM3-211ENST00000532542 EVA1CP58658 441 aa13.85□□□□□ -0.19
TRIM3-211ENST00000532542 TTC5Q8N0Z6 440 aa13.85□□□□□ -0.19
TRIM3-211ENST00000532542 GCC1Q96CN9 775 aa13.85□□□□□ -0.19
TRIM3-211ENST00000532542 C19orf44Q9H6X5 657 aa13.85□□□□□ -0.19
TRIM3-211ENST00000532542 MED14O60244 1454 aa13.84□□□□□ -0.19
TRIM3-211ENST00000532542 LNPKQ9C0E8 428 aa13.84□□□□□ -0.19
TRIM3-211ENST00000532542 SBNO1A3KN83 1393 aa13.84□□□□□ -0.19
TRIM3-211ENST00000532542 TATP17735 454 aaPredicted RBP13.84□□□□□ -0.19
TRIM3-211ENST00000532542 ARHGAP45Q92619 1136 aa13.84□□□□□ -0.19
TRIM3-211ENST00000532542 PLEKHF1Q96S99 279 aa13.83□□□□□ -0.19
TRIM3-211ENST00000532542 AMOTQ4VCS5 1084 aa13.83□□□□□ -0.2
TRIM3-211ENST00000532542 HDGFL1Q5TGJ6 251 aa13.83□□□□□ -0.2
TRIM3-211ENST00000532542 GNAI3P08754 354 aa13.83□□□□□ -0.2
TRIM3-211ENST00000532542 CCT4P50991 539 aaKnown RBP13.83□□□□□ -0.2
TRIM3-211ENST00000532542 ZC3H6P61129 1189 aaKnown RBP13.83□□□□□ -0.2
TRIM3-211ENST00000532542 MYO3AQ8NEV4 1616 aa13.82□□□□□ -0.2
TRIM3-211ENST00000532542 DDX58O95786 925 aaKnown RBP13.82□□□□□ -0.2
TRIM3-211ENST00000532542 TAF7Q15545 349 aaPredicted RBP13.82□□□□□ -0.2
TRIM3-211ENST00000532542 USP6P35125 1406 aa13.82□□□□□ -0.2
TRIM3-211ENST00000532542 HTATSF1O43719 755 aaKnown RBP13.82□□□□□ -0.2
TRIM3-211ENST00000532542 HSP90AB1P08238 724 aaKnown RBP13.81□□□□□ -0.2
TRIM3-211ENST00000532542 MIS18AQ9NYP9 233 aa13.81□□□□□ -0.2
TRIM3-211ENST00000532542 USHBP1Q8N6Y0 703 aa13.81□□□□□ -0.2
TRIM3-211ENST00000532542 EYA1Q99502 592 aa13.8□□□□□ -0.2
TRIM3-211ENST00000532542 SPG7Q9UQ90 795 aa13.8□□□□□ -0.2
TRIM3-211ENST00000532542 HOXC9P31274 260 aa13.8□□□□□ -0.2
TRIM3-211ENST00000532542 C1orf115Q9H7X2 142 aa13.8□□□□□ -0.2
TRIM3-211ENST00000532542 MCCP23508 829 aa13.8□□□□□ -0.2
TRIM3-211ENST00000532542 NEXNQ0ZGT2 675 aa13.8□□□□□ -0.2
TRIM3-211ENST00000532542 VAMP4O75379 141 aa13.79□□□□□ -0.2
TRIM3-211ENST00000532542 PTPRCP08575 1304 aa13.79□□□□□ -0.2
TRIM3-211ENST00000532542 C9orf78Q9NZ63 289 aaPredicted RBP13.79□□□□□ -0.2
TRIM3-211ENST00000532542 MSH6P52701 1360 aa13.78□□□□□ -0.2
TRIM3-211ENST00000532542 CDK12Q9NYV4 1490 aaPredicted RBP13.78□□□□□ -0.2
TRIM3-211ENST00000532542 TECPR2O15040 1411 aa13.78□□□□□ -0.2
TRIM3-211ENST00000532542 IGHDP01880 384 aa13.78□□□□□ -0.2
TRIM3-211ENST00000532542 UBTFL1P0CB47 393 aaPredicted RBP13.78□□□□□ -0.2
TRIM3-211ENST00000532542 MTHFSDQ2M296 383 aaKnown RBP13.78□□□□□ -0.2
TRIM3-211ENST00000532542 PRDM11Q9NQV5 511 aa13.78□□□□□ -0.2
TRIM3-211ENST00000532542 NPHP3Q7Z494 1330 aa13.78□□□□□ -0.2
TRIM3-211ENST00000532542 ADAMTS13Q76LX8 1427 aa13.78□□□□□ -0.2
TRIM3-211ENST00000532542 IP6K1Q92551 441 aa13.78□□□□□ -0.2
TRIM3-211ENST00000532542 BTBD11A6QL63 1104 aa13.78□□□□□ -0.2
TRIM3-211ENST00000532542 GNAI2P04899 355 aa13.78□□□□□ -0.2
TRIM3-211ENST00000532542 RLBP1P12271 317 aa13.78□□□□□ -0.2
TRIM3-211ENST00000532542 RPAP2Q8IXW5 612 aaPredicted RBP13.78□□□□□ -0.2
TRIM3-211ENST00000532542 ARHGEF28Q8N1W1 1705 aaKnown RBP13.77□□□□□ -0.2
TRIM3-211ENST00000532542 IFT172Q9UG01 1749 aa13.77□□□□□ -0.2
TRIM3-211ENST00000532542 NPHP4O75161 1426 aaPredicted RBP13.77□□□□□ -0.2
TRIM3-211ENST00000532542 C8orf58Q8NAV2 365 aa13.77□□□□□ -0.2
TRIM3-211ENST00000532542 CPSF1Q10570 1443 aaKnown RBP13.77□□□□□ -0.2
TRIM3-211ENST00000532542 SIGLEC1Q9BZZ2 1709 aa13.77□□□□□ -0.2
TRIM3-211ENST00000532542 MRPL50Q8N5N7 158 aaKnown RBP13.77□□□□□ -0.21
TRIM3-211ENST00000532542 GPATCH3Q96I76 525 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms