RNA–Protein interactions for RNA: ENST00000528865.5

CSTF3-208, Transcript of cleavage stimulation factor subunit 3, human

TSL 5

Gene CSTF3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSTF3-208	ENST00000528865	FAM69C	Q0P6D2	419 aa		10.54	□□□□□ -0.72
CSTF3-208	ENST00000528865	BMP2KL	Q5H9B9	411 aa		10.54	□□□□□ -0.72
CSTF3-208	ENST00000528865	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	10.54	□□□□□ -0.72
CSTF3-208	ENST00000528865	NUDT16	Q96DE0	195 aa	Known RBP	10.54	□□□□□ -0.72
CSTF3-208	ENST00000528865	CFAP44	Q96MT7	982 aa		10.54	□□□□□ -0.72
CSTF3-208	ENST00000528865	ZNF692	Q9BU19	519 aa	Predicted RBP	10.54	□□□□□ -0.72
CSTF3-208	ENST00000528865	CHMP5	Q9NZZ3	219 aa		10.54	□□□□□ -0.72
CSTF3-208	ENST00000528865	CCDC61	Q9Y6R9	512 aa		10.54	□□□□□ -0.72
CSTF3-208	ENST00000528865	ABCC4	O15439	1325 aa		10.54	□□□□□ -0.72
CSTF3-208	ENST00000528865	FBLN1	P23142	703 aa		10.53	□□□□□ -0.72
CSTF3-208	ENST00000528865	DDIT3	P35638	169 aa		10.53	□□□□□ -0.72
CSTF3-208	ENST00000528865	API5	Q9BZZ5	524 aa	Known RBP	10.53	□□□□□ -0.72
CSTF3-208	ENST00000528865	SLK	Q9H2G2	1235 aa	Predicted RBP	10.53	□□□□□ -0.72
CSTF3-208	ENST00000528865	MBIP	Q9NS73	344 aa		10.53	□□□□□ -0.72
CSTF3-208	ENST00000528865	NRXN3	Q9Y4C0	1643 aa		10.53	□□□□□ -0.72
CSTF3-208	ENST00000528865	DIP2B	Q9P265	1576 aa		10.52	□□□□□ -0.72
CSTF3-208	ENST00000528865	NCOA3	Q9Y6Q9	1424 aa		10.52	□□□□□ -0.73
CSTF3-208	ENST00000528865	MCM4	P33991	863 aa		10.52	□□□□□ -0.73
CSTF3-208	ENST00000528865	MFAP1	P55081	439 aa	Known RBP	10.52	□□□□□ -0.73
CSTF3-208	ENST00000528865	NME9	Q86XW9	330 aa		10.52	□□□□□ -0.73
CSTF3-208	ENST00000528865	TSPYL6	Q8N831	410 aa		10.52	□□□□□ -0.73
CSTF3-208	ENST00000528865	BRPF3	Q9ULD4	1205 aa		10.52	□□□□□ -0.73
CSTF3-208	ENST00000528865	EMILIN1	Q9Y6C2	1016 aa		10.52	□□□□□ -0.73
CSTF3-208	ENST00000528865	MET	P08581	1390 aa		10.52	□□□□□ -0.73
CSTF3-208	ENST00000528865	MAP2	P11137	1827 aa	Known RBP	10.51	□□□□□ -0.73
CSTF3-208	ENST00000528865	KNDC1	Q76NI1	1749 aa		10.51	□□□□□ -0.73
CSTF3-208	ENST00000528865	HMOX1	P09601	288 aa		10.51	□□□□□ -0.73
CSTF3-208	ENST00000528865	L1TD1	Q5T7N2	865 aa	Known RBP	10.51	□□□□□ -0.73
CSTF3-208	ENST00000528865	CYB5RL	Q6IPT4	315 aa		10.51	□□□□□ -0.73
CSTF3-208	ENST00000528865	SIRT2	Q8IXJ6	389 aa		10.51	□□□□□ -0.73
CSTF3-208	ENST00000528865	COG3	Q96JB2	828 aa		10.51	□□□□□ -0.73
CSTF3-208	ENST00000528865	CPS1	P31327	1500 aa		10.5	□□□□□ -0.73
CSTF3-208	ENST00000528865	EIF5B	O60841	1220 aa	Known RBP	10.5	□□□□□ -0.73
CSTF3-208	ENST00000528865	TWISTNB	Q3B726	338 aa	Predicted RBP	10.5	□□□□□ -0.73
CSTF3-208	ENST00000528865	LNPK	Q9C0E8	428 aa		10.5	□□□□□ -0.73
CSTF3-208	ENST00000528865	ZRANB1	Q9UGI0	708 aa		10.5	□□□□□ -0.73
CSTF3-208	ENST00000528865	CIZ1	Q9ULV3	898 aa	Predicted RBP	10.5	□□□□□ -0.73
CSTF3-208	ENST00000528865	PLEKHG3	A1L390	1219 aa		10.49	□□□□□ -0.73
CSTF3-208	ENST00000528865	FSD2	A1L4K1	749 aa		10.49	□□□□□ -0.73
CSTF3-208	ENST00000528865	INTS3	Q68E01	1043 aa	Known RBP	10.49	□□□□□ -0.73
CSTF3-208	ENST00000528865	PLPPR3	Q6T4P5	718 aa		10.49	□□□□□ -0.73
CSTF3-208	ENST00000528865	TXNDC2	Q86VQ3	553 aa		10.49	□□□□□ -0.73
CSTF3-208	ENST00000528865	HSCB	Q8IWL3	235 aa		10.49	□□□□□ -0.73
CSTF3-208	ENST00000528865	C8orf58	Q8NAV2	365 aa		10.49	□□□□□ -0.73
CSTF3-208	ENST00000528865	THUMPD2	Q9BTF0	503 aa	Known RBP	10.49	□□□□□ -0.73
CSTF3-208	ENST00000528865	DCTPP1	Q9H773	170 aa		10.49	□□□□□ -0.73
CSTF3-208	ENST00000528865	MON2	Q7Z3U7	1717 aa		10.49	□□□□□ -0.73
CSTF3-208	ENST00000528865	CHL1	O00533	1208 aa		10.48	□□□□□ -0.73
CSTF3-208	ENST00000528865	HAP1	P54257	671 aa	Predicted RBP	10.48	□□□□□ -0.73
CSTF3-208	ENST00000528865	ANKRD45	Q5TZF3	282 aa		10.48	□□□□□ -0.73
CSTF3-208	ENST00000528865	FAM43A	Q8N2R8	423 aa		10.48	□□□□□ -0.73
CSTF3-208	ENST00000528865	KIF2C	Q99661	725 aa		10.48	□□□□□ -0.73
CSTF3-208	ENST00000528865	PRR36	Q9H6K5	1346 aa		10.48	□□□□□ -0.73
CSTF3-208	ENST00000528865	KIAA0232	Q92628	1395 aa		10.48	□□□□□ -0.73
CSTF3-208	ENST00000528865	C3	P01024	1663 aa		10.47	□□□□□ -0.73
CSTF3-208	ENST00000528865	AKAP12	Q02952	1782 aa		10.47	□□□□□ -0.73
CSTF3-208	ENST00000528865	NRK	Q7Z2Y5	1582 aa		10.47	□□□□□ -0.73
CSTF3-208	ENST00000528865	RPAP2	Q8IXW5	612 aa	Predicted RBP	10.46	□□□□□ -0.73
CSTF3-208	ENST00000528865	TTC21B	Q7Z4L5	1316 aa		10.46	□□□□□ -0.73
CSTF3-208	ENST00000528865	USP31	Q70CQ4	1352 aa		10.46	□□□□□ -0.74
CSTF3-208	ENST00000528865	TMEM2	Q9UHN6	1383 aa		10.45	□□□□□ -0.74
CSTF3-208	ENST00000528865	TRAK2	O60296	914 aa		10.45	□□□□□ -0.74
CSTF3-208	ENST00000528865	EIF4A2	Q14240	407 aa	Known RBP	10.45	□□□□□ -0.74
CSTF3-208	ENST00000528865	RRS1	Q15050	365 aa	Known RBP	10.45	□□□□□ -0.74
CSTF3-208	ENST00000528865	TBC1D9	Q6ZT07	1266 aa		10.45	□□□□□ -0.74
CSTF3-208	ENST00000528865	PLEKHM2	Q8IWE5	1019 aa		10.45	□□□□□ -0.74
CSTF3-208	ENST00000528865	ANKRD44	Q8N8A2	993 aa		10.45	□□□□□ -0.74
CSTF3-208	ENST00000528865	ISY1	Q9ULR0	285 aa	Known RBP	10.45	□□□□□ -0.74
CSTF3-208	ENST00000528865	OVOS2	A0A0J9YW53	1432 aa		10.44	□□□□□ -0.74
CSTF3-208	ENST00000528865	OVOS2	Q6IE36	1432 aa		10.44	□□□□□ -0.74
CSTF3-208	ENST00000528865	SSH2	Q76I76	1423 aa		10.44	□□□□□ -0.74
CSTF3-208	ENST00000528865	ADAMTS13	Q76LX8	1427 aa		10.44	□□□□□ -0.74
CSTF3-208	ENST00000528865	TNR	Q92752	1358 aa		10.44	□□□□□ -0.74
CSTF3-208	ENST00000528865	NCKAP5L	Q9HCH0	1330 aa		10.44	□□□□□ -0.74
CSTF3-208	ENST00000528865	DDX11L8	A8MPP1	907 aa		10.44	□□□□□ -0.74
CSTF3-208	ENST00000528865	ELL2	O00472	640 aa	Predicted RBP	10.44	□□□□□ -0.74
CSTF3-208	ENST00000528865	CDC45	O75419	566 aa		10.44	□□□□□ -0.74
CSTF3-208	ENST00000528865	C1orf115	Q9H7X2	142 aa		10.44	□□□□□ -0.74
CSTF3-208	ENST00000528865	DLG5	Q8TDM6	1919 aa		10.44	□□□□□ -0.74
CSTF3-208	ENST00000528865	RGS12	O14924	1447 aa		10.43	□□□□□ -0.74
CSTF3-208	ENST00000528865	ROBO2	Q9HCK4	1378 aa		10.43	□□□□□ -0.74
CSTF3-208	ENST00000528865	PTPRC	P08575	1304 aa		10.43	□□□□□ -0.74
CSTF3-208	ENST00000528865	FAM83G	A6ND36	823 aa		10.43	□□□□□ -0.74
CSTF3-208	ENST00000528865	PTMS	P20962	102 aa		10.43	□□□□□ -0.74
CSTF3-208	ENST00000528865	RAB3GAP1	Q15042	981 aa		10.43	□□□□□ -0.74
CSTF3-208	ENST00000528865	CLEC17A	Q6ZS10	378 aa		10.43	□□□□□ -0.74
CSTF3-208	ENST00000528865	CRB1	P82279	1406 aa		10.42	□□□□□ -0.74
CSTF3-208	ENST00000528865	PLEKHG1	Q9ULL1	1385 aa		10.42	□□□□□ -0.74
CSTF3-208	ENST00000528865	GOLGA6L3	A6NEY3	463 aa		10.42	□□□□□ -0.74
CSTF3-208	ENST00000528865	XRCC6	P12956	609 aa	Known RBP eCLIP	10.42	□□□□□ -0.74
CSTF3-208	ENST00000528865	MLEC	Q14165	292 aa		10.42	□□□□□ -0.74
CSTF3-208	ENST00000528865	DCTN1	Q14203	1278 aa		10.42	□□□□□ -0.74
CSTF3-208	ENST00000528865	SULT6B1	Q6IMI4	303 aa		10.42	□□□□□ -0.74
CSTF3-208	ENST00000528865	SPRYD3	Q8NCJ5	442 aa		10.42	□□□□□ -0.74
CSTF3-208	ENST00000528865	RTN4	Q9NQC3	1192 aa	Known RBP	10.42	□□□□□ -0.74
CSTF3-208	ENST00000528865	ACE	P12821	1306 aa		10.41	□□□□□ -0.74
CSTF3-208	ENST00000528865		K7ELQ4	463 aa	Predicted RBP	10.41	□□□□□ -0.74
CSTF3-208	ENST00000528865	GSPT1	P15170	499 aa	Known RBP	10.41	□□□□□ -0.74
CSTF3-208	ENST00000528865	TTC22	Q5TAA0	569 aa		10.41	□□□□□ -0.74
CSTF3-208	ENST00000528865	AEBP1	Q8IUX7	1158 aa		10.41	□□□□□ -0.74

Retrieved 100 of 20,778 RNA–protein pairs in 71 ms