RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 FAM160A2Q8N612 972 aaPredicted RBP7.35□□□□□ -1.23
CD44-225ENST00000527326 ZNF622Q969S3 477 aaKnown RBP eCLIP7.35□□□□□ -1.23
CD44-225ENST00000527326 GPBP1L1Q9HC44 474 aaPredicted RBP7.35□□□□□ -1.23
CD44-225ENST00000527326 CCDC88BA6NC98 1476 aa7.35□□□□□ -1.23
CD44-225ENST00000527326 ERBB4Q15303 1308 aa7.34□□□□□ -1.23
CD44-225ENST00000527326 ERICH3Q5RHP9 1530 aa7.34□□□□□ -1.23
CD44-225ENST00000527326 TNFRSF10AO00220 468 aa7.34□□□□□ -1.23
CD44-225ENST00000527326 PTMAP06454 111 aaKnown RBP7.34□□□□□ -1.23
CD44-225ENST00000527326 BRICD5Q6PL45 260 aa7.34□□□□□ -1.23
CD44-225ENST00000527326 ZSCAN30Q86W11 494 aa7.34□□□□□ -1.23
CD44-225ENST00000527326 FANCD2Q9BXW9 1451 aa7.34□□□□□ -1.23
CD44-225ENST00000527326 RAB3GAP2Q9H2M9 1393 aa7.33□□□□□ -1.24
CD44-225ENST00000527326 VGLL3A8MV65 326 aa7.33□□□□□ -1.24
CD44-225ENST00000527326 PRR20EP86478 221 aa7.33□□□□□ -1.24
CD44-225ENST00000527326 PRR20CP86479 221 aa7.33□□□□□ -1.24
CD44-225ENST00000527326 PRR20DP86480 221 aa7.33□□□□□ -1.24
CD44-225ENST00000527326 PRR20BP86481 221 aa7.33□□□□□ -1.24
CD44-225ENST00000527326 PRR20AP86496 221 aa7.33□□□□□ -1.24
CD44-225ENST00000527326 CCDC173Q0VFZ6 552 aa7.33□□□□□ -1.24
CD44-225ENST00000527326 CSPP1Q1MSJ5 1256 aa7.33□□□□□ -1.24
CD44-225ENST00000527326 PKDCCQ504Y2 493 aa7.33□□□□□ -1.24
CD44-225ENST00000527326 AK7Q96M32 723 aa7.33□□□□□ -1.24
CD44-225ENST00000527326 ARID3AQ99856 593 aa7.33□□□□□ -1.24
CD44-225ENST00000527326 TSPYL1Q9H0U9 437 aa7.33□□□□□ -1.24
CD44-225ENST00000527326 YY1AP1Q9H869 796 aa7.33□□□□□ -1.24
CD44-225ENST00000527326 GRPEL1Q9HAV7 217 aa7.33□□□□□ -1.24
CD44-225ENST00000527326 PRDM10Q9NQV6 1147 aa7.33□□□□□ -1.24
CD44-225ENST00000527326 FCF1Q9Y324 198 aaKnown RBP7.33□□□□□ -1.24
CD44-225ENST00000527326 SETD5Q9C0A6 1442 aa7.33□□□□□ -1.24
CD44-225ENST00000527326 CCNB3Q8WWL7 1395 aa7.33□□□□□ -1.24
CD44-225ENST00000527326 GDF9O60383 454 aa7.32□□□□□ -1.24
CD44-225ENST00000527326 CD46P15529 392 aa7.32□□□□□ -1.24
CD44-225ENST00000527326 MSNP26038 577 aaKnown RBP7.32□□□□□ -1.24
CD44-225ENST00000527326 RRP1P56182 461 aaKnown RBP7.32□□□□□ -1.24
CD44-225ENST00000527326 FOXC1Q12948 553 aa7.32□□□□□ -1.24
CD44-225ENST00000527326 HS1BP3Q53T59 392 aa7.32□□□□□ -1.24
CD44-225ENST00000527326 ZNF787Q6DD87 383 aa7.32□□□□□ -1.24
CD44-225ENST00000527326 RNF19BQ6ZMZ0 732 aa7.32□□□□□ -1.24
CD44-225ENST00000527326 PANK2Q9BZ23 570 aa7.32□□□□□ -1.24
CD44-225ENST00000527326 MRS2Q9HD23 443 aa7.32□□□□□ -1.24
CD44-225ENST00000527326 KTN1Q86UP2 1357 aaKnown RBP7.32□□□□□ -1.24
CD44-225ENST00000527326 WIZO95785 1651 aa7.32□□□□□ -1.24
CD44-225ENST00000527326 UQCRHLA0A096LP55 91 aa7.31□□□□□ -1.24
CD44-225ENST00000527326 FAM187AA6NFU0 413 aa7.31□□□□□ -1.24
CD44-225ENST00000527326 KDM4AO75164 1064 aa7.31□□□□□ -1.24
CD44-225ENST00000527326 DGAT1O75907 488 aa7.31□□□□□ -1.24
CD44-225ENST00000527326 CD2BP2O95400 341 aaKnown RBP7.31□□□□□ -1.24
CD44-225ENST00000527326 UQCRHP07919 91 aa7.31□□□□□ -1.24
CD44-225ENST00000527326 RPIAP49247 311 aa7.31□□□□□ -1.24
CD44-225ENST00000527326 Q3C1V9 767 aa7.31□□□□□ -1.24
CD44-225ENST00000527326 CCDC102AQ96A19 550 aa7.31□□□□□ -1.24
CD44-225ENST00000527326 PRDM9Q9NQV7 894 aa7.31□□□□□ -1.24
CD44-225ENST00000527326 CFTRP13569 1480 aa7.3□□□□□ -1.24
CD44-225ENST00000527326 SCAPERQ9BY12 1400 aa7.3□□□□□ -1.24
CD44-225ENST00000527326 SASS6Q6UVJ0 657 aa7.3□□□□□ -1.24
CD44-225ENST00000527326 FAM9BQ8IZU0 186 aa7.3□□□□□ -1.24
CD44-225ENST00000527326 KRI1Q8N9T8 703 aaKnown RBP7.3□□□□□ -1.24
CD44-225ENST00000527326 PPP1R9BQ96SB3 815 aa7.3□□□□□ -1.24
CD44-225ENST00000527326 ABCA5Q8WWZ7 1642 aa7.3□□□□□ -1.24
CD44-225ENST00000527326 CCDC144AA2RUR9 1427 aa7.29□□□□□ -1.24
CD44-225ENST00000527326 SOGA1O94964 1423 aa7.29□□□□□ -1.24
CD44-225ENST00000527326 ZNF500O60304 480 aaPredicted RBP7.29□□□□□ -1.24
CD44-225ENST00000527326 MSS51Q4VC12 460 aa7.29□□□□□ -1.24
CD44-225ENST00000527326 CNPY4Q8N129 248 aa7.29□□□□□ -1.24
CD44-225ENST00000527326 PRKRIP1Q9H875 184 aaPredicted RBP7.29□□□□□ -1.24
CD44-225ENST00000527326 PKD2L1Q9P0L9 805 aa7.29□□□□□ -1.24
CD44-225ENST00000527326 HDAC5Q9UQL6 1122 aa7.29□□□□□ -1.24
CD44-225ENST00000527326 RIMBP3CA6NJZ7 1639 aa7.29□□□□□ -1.24
CD44-225ENST00000527326 RIMBP3BA6NNM3 1639 aa7.29□□□□□ -1.24
CD44-225ENST00000527326 RIMBP3Q9UFD9 1639 aa7.29□□□□□ -1.24
CD44-225ENST00000527326 VIRMAQ69YN4 1812 aaKnown RBP7.29□□□□□ -1.24
CD44-225ENST00000527326 CCDC66A2RUB6 948 aa7.28□□□□□ -1.24
CD44-225ENST00000527326 ZBTB24O43167 697 aaPredicted RBP7.28□□□□□ -1.24
CD44-225ENST00000527326 MCM4P33991 863 aa7.28□□□□□ -1.24
CD44-225ENST00000527326 MCM5P33992 734 aa7.28□□□□□ -1.24
CD44-225ENST00000527326 USP46P62068 366 aa7.28□□□□□ -1.24
CD44-225ENST00000527326 KDM4CQ9H3R0 1056 aa7.28□□□□□ -1.24
CD44-225ENST00000527326 GPCPD1Q9NPB8 672 aa7.28□□□□□ -1.24
CD44-225ENST00000527326 GEMIN8Q9NWZ8 242 aaKnown RBP7.28□□□□□ -1.24
CD44-225ENST00000527326 R3HCC1Q9Y3T6 440 aaKnown RBP7.28□□□□□ -1.24
CD44-225ENST00000527326 TONSLQ96HA7 1378 aa7.28□□□□□ -1.24
CD44-225ENST00000527326 NINLQ9Y2I6 1382 aa7.28□□□□□ -1.24
CD44-225ENST00000527326 TRIM66O15016 1216 aa7.27□□□□□ -1.25
CD44-225ENST00000527326 APPP05067 770 aa7.27□□□□□ -1.25
CD44-225ENST00000527326 FAM193AP78312 1265 aa7.27□□□□□ -1.25
CD44-225ENST00000527326 WWC1Q8IX03 1113 aa7.27□□□□□ -1.25
CD44-225ENST00000527326 EXOC6Q8TAG9 804 aa7.27□□□□□ -1.25
CD44-225ENST00000527326 USB1Q9BQ65 265 aaKnown RBP7.27□□□□□ -1.25
CD44-225ENST00000527326 TOP2AP11388 1531 aaKnown RBP7.27□□□□□ -1.25
CD44-225ENST00000527326 IFT140Q96RY7 1462 aa7.26□□□□□ -1.25
CD44-225ENST00000527326 TRAK2O60296 914 aa7.26□□□□□ -1.25
CD44-225ENST00000527326 RALBP1Q15311 655 aa7.26□□□□□ -1.25
CD44-225ENST00000527326 NBPF1Q3BBV0 1214 aa7.26□□□□□ -1.25
CD44-225ENST00000527326 C8orf34Q49A92 452 aa7.26□□□□□ -1.25
CD44-225ENST00000527326 CEP120Q8N960 986 aa7.26□□□□□ -1.25
CD44-225ENST00000527326 HLA-CQ95604 372 aa7.26□□□□□ -1.25
CD44-225ENST00000527326 ANTXR1Q9H6X2 564 aa7.26□□□□□ -1.25
CD44-225ENST00000527326 CGNQ9P2M7 1197 aaKnown RBP7.26□□□□□ -1.25
CD44-225ENST00000527326 MCCP23508 829 aa7.25□□□□□ -1.25
CD44-225ENST00000527326 GABPB1Q06547 395 aaPredicted RBP7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms