RNA–Protein interactions for RNA: ENST00000524330.1

VPS13B-212, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 5

Gene VPS13B, Length 218 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-212ENST00000524330 RBM33Q96EV2 1170 aaKnown RBP12.94□□□□□ -0.34
VPS13B-212ENST00000524330 MAP3K19Q56UN5 1328 aa12.93□□□□□ -0.34
VPS13B-212ENST00000524330 SOX12O15370 315 aa12.93□□□□□ -0.34
VPS13B-212ENST00000524330 EIF4A2Q14240 407 aaKnown RBP12.93□□□□□ -0.34
VPS13B-212ENST00000524330 KRT28Q7Z3Y7 464 aa12.93□□□□□ -0.34
VPS13B-212ENST00000524330 NPHP3Q7Z494 1330 aa12.92□□□□□ -0.34
VPS13B-212ENST00000524330 HMOX1P09601 288 aa12.92□□□□□ -0.34
VPS13B-212ENST00000524330 MS4A1P11836 297 aa12.92□□□□□ -0.34
VPS13B-212ENST00000524330 HAP1P54257 671 aaPredicted RBP12.92□□□□□ -0.34
VPS13B-212ENST00000524330 FOXO3O43524 673 aa12.91□□□□□ -0.34
VPS13B-212ENST00000524330 FBLN1P23142 703 aa12.91□□□□□ -0.34
VPS13B-212ENST00000524330 CANXP27824 592 aaKnown RBP12.91□□□□□ -0.34
VPS13B-212ENST00000524330 SULT6B1Q6IMI4 303 aa12.91□□□□□ -0.34
VPS13B-212ENST00000524330 ORAI2Q96SN7 254 aa12.91□□□□□ -0.34
VPS13B-212ENST00000524330 MST1RQ04912 1400 aa12.9□□□□□ -0.34
VPS13B-212ENST00000524330 GNAI1P63096 354 aa12.9□□□□□ -0.34
VPS13B-212ENST00000524330 HSP90AB2PQ58FF8 381 aa12.9□□□□□ -0.34
VPS13B-212ENST00000524330 LMOD2Q6P5Q4 547 aa12.9□□□□□ -0.34
VPS13B-212ENST00000524330 ZNF428Q96B54 188 aa12.9□□□□□ -0.34
VPS13B-212ENST00000524330 CCDC136Q96JN2 1154 aa12.9□□□□□ -0.34
VPS13B-212ENST00000524330 HOXC9P31274 260 aa12.89□□□□□ -0.35
VPS13B-212ENST00000524330 NUTM2GQ5VZR2 741 aa12.89□□□□□ -0.35
VPS13B-212ENST00000524330 GAS2L2Q8NHY3 880 aa12.89□□□□□ -0.35
VPS13B-212ENST00000524330 IP6K1Q92551 441 aa12.89□□□□□ -0.35
VPS13B-212ENST00000524330 STRCQ7RTU9 1775 aa12.89□□□□□ -0.35
VPS13B-212ENST00000524330 TRIM35Q9UPQ4 493 aa12.88□□□□□ -0.35
VPS13B-212ENST00000524330 AAMPQ13685 434 aa12.87□□□□□ -0.35
VPS13B-212ENST00000524330 RTF1Q92541 710 aaKnown RBP12.87□□□□□ -0.35
VPS13B-212ENST00000524330 IFT57Q9NWB7 429 aa12.87□□□□□ -0.35
VPS13B-212ENST00000524330 IGSF1Q8N6C5 1336 aa12.87□□□□□ -0.35
VPS13B-212ENST00000524330 STRCP1A6NGW2 1772 aa12.86□□□□□ -0.35
VPS13B-212ENST00000524330 PEAK1Q9H792 1746 aa12.86□□□□□ -0.35
VPS13B-212ENST00000524330 HTATSF1O43719 755 aaKnown RBP12.86□□□□□ -0.35
VPS13B-212ENST00000524330 PDE3AQ14432 1141 aa12.86□□□□□ -0.35
VPS13B-212ENST00000524330 SLIT3O75094 1523 aa12.86□□□□□ -0.35
VPS13B-212ENST00000524330 USP19O94966 1318 aa12.86□□□□□ -0.35
VPS13B-212ENST00000524330 GCP02774 474 aa12.85□□□□□ -0.35
VPS13B-212ENST00000524330 SPINK5Q9NQ38 1064 aaPredicted RBP12.85□□□□□ -0.35
VPS13B-212ENST00000524330 FANCIQ9NVI1 1328 aa12.85□□□□□ -0.35
VPS13B-212ENST00000524330 RGPD1P0DJD0 1748 aa12.85□□□□□ -0.35
VPS13B-212ENST00000524330 TRPM3Q9HCF6 1732 aaPredicted RBP12.85□□□□□ -0.35
VPS13B-212ENST00000524330 PHRF1Q9P1Y6 1649 aaKnown RBP12.84□□□□□ -0.35
VPS13B-212ENST00000524330 KDRP35968 1356 aa12.84□□□□□ -0.35
VPS13B-212ENST00000524330 ZBTB7CA1YPR0 619 aa12.84□□□□□ -0.35
VPS13B-212ENST00000524330 IPO8O15397 1037 aaKnown RBP12.84□□□□□ -0.35
VPS13B-212ENST00000524330 PHACTR3Q96KR7 559 aa12.84□□□□□ -0.35
VPS13B-212ENST00000524330 MARF1Q9Y4F3 1742 aaKnown RBP12.84□□□□□ -0.35
VPS13B-212ENST00000524330 LTN1O94822 1766 aa12.84□□□□□ -0.35
VPS13B-212ENST00000524330 NFAT5O94916 1531 aa12.83□□□□□ -0.35
VPS13B-212ENST00000524330 TNS3Q68CZ2 1445 aa12.83□□□□□ -0.36
VPS13B-212ENST00000524330 RARSP54136 660 aaKnown RBP12.83□□□□□ -0.36
VPS13B-212ENST00000524330 ALDH1L2Q3SY69 923 aa12.83□□□□□ -0.36
VPS13B-212ENST00000524330 CFAP44Q96MT7 982 aa12.83□□□□□ -0.36
VPS13B-212ENST00000524330 EYA1Q99502 592 aa12.83□□□□□ -0.36
VPS13B-212ENST00000524330 LAS1LQ9Y4W2 734 aaKnown RBP12.83□□□□□ -0.36
VPS13B-212ENST00000524330 XPCQ01831 940 aaPredicted RBP12.82□□□□□ -0.36
VPS13B-212ENST00000524330 EXOSC9Q06265 439 aaKnown RBP12.82□□□□□ -0.36
VPS13B-212ENST00000524330 ARHGEF25Q86VW2 580 aa12.82□□□□□ -0.36
VPS13B-212ENST00000524330 LTV1Q96GA3 475 aaPredicted RBP12.82□□□□□ -0.36
VPS13B-212ENST00000524330 CHMP4BQ9H444 224 aaKnown RBP12.82□□□□□ -0.36
VPS13B-212ENST00000524330 SLAIN2Q9P270 581 aa12.82□□□□□ -0.36
VPS13B-212ENST00000524330 KIF16BQ96L93 1317 aa12.82□□□□□ -0.36
VPS13B-212ENST00000524330 ZNF335Q9H4Z2 1342 aaPredicted RBP12.82□□□□□ -0.36
VPS13B-212ENST00000524330 B4GALNT3Q6L9W6 998 aa12.81□□□□□ -0.36
VPS13B-212ENST00000524330 AEBP1Q8IUX7 1158 aa12.81□□□□□ -0.36
VPS13B-212ENST00000524330 EXOC6Q8TAG9 804 aa12.81□□□□□ -0.36
VPS13B-212ENST00000524330 CHMP4AQ9BY43 222 aa12.81□□□□□ -0.36
VPS13B-212ENST00000524330 ALS2Q96Q42 1657 aa12.8□□□□□ -0.36
VPS13B-212ENST00000524330 ABCC6O95255 1503 aa12.8□□□□□ -0.36
VPS13B-212ENST00000524330 PLIN1O60240 522 aa12.8□□□□□ -0.36
VPS13B-212ENST00000524330 AMOTQ4VCS5 1084 aa12.8□□□□□ -0.36
VPS13B-212ENST00000524330 ZKSCAN2Q63HK3 967 aa12.8□□□□□ -0.36
VPS13B-212ENST00000524330 CRBNQ96SW2 442 aa12.8□□□□□ -0.36
VPS13B-212ENST00000524330 SMC4Q9NTJ3 1288 aa12.8□□□□□ -0.36
VPS13B-212ENST00000524330 PLEKHO1Q53GL0 409 aaPredicted RBP12.79□□□□□ -0.36
VPS13B-212ENST00000524330 FRAT1Q92837 279 aaPredicted RBP12.79□□□□□ -0.36
VPS13B-212ENST00000524330 TSR2Q969E8 191 aaKnown RBP12.79□□□□□ -0.36
VPS13B-212ENST00000524330 BABAM1Q9NWV8 329 aa12.79□□□□□ -0.36
VPS13B-212ENST00000524330 SPATA31A3Q5VYP0 1347 aa12.79□□□□□ -0.36
VPS13B-212ENST00000524330 DLG5Q8TDM6 1919 aa12.78□□□□□ -0.36
VPS13B-212ENST00000524330 GNAT3A8MTJ3 354 aa12.78□□□□□ -0.36
VPS13B-212ENST00000524330 BCAR3O75815 825 aa12.78□□□□□ -0.36
VPS13B-212ENST00000524330 ZNF853P0CG23 659 aa12.78□□□□□ -0.36
VPS13B-212ENST00000524330 BRINP3Q76B58 766 aa12.78□□□□□ -0.36
VPS13B-212ENST00000524330 FTSJ3Q8IY81 847 aaKnown RBP12.78□□□□□ -0.36
VPS13B-212ENST00000524330 XIRP1Q702N8 1843 aaKnown RBP12.78□□□□□ -0.36
VPS13B-212ENST00000524330 PLEKHG2Q9H7P9 1386 aa12.78□□□□□ -0.36
VPS13B-212ENST00000524330 MTHFSDQ2M296 383 aaKnown RBP12.77□□□□□ -0.37
VPS13B-212ENST00000524330 ANKRD24Q8TF21 1146 aa12.77□□□□□ -0.37
VPS13B-212ENST00000524330 SOS1Q07889 1333 aaPredicted RBP12.77□□□□□ -0.37
VPS13B-212ENST00000524330 PXDNQ92626 1479 aa12.77□□□□□ -0.37
VPS13B-212ENST00000524330 BRPF1P55201 1214 aaPredicted RBP12.76□□□□□ -0.37
VPS13B-212ENST00000524330 MAP3K5Q99683 1374 aa12.76□□□□□ -0.37
VPS13B-212ENST00000524330 MED1Q15648 1581 aaPredicted RBP12.76□□□□□ -0.37
VPS13B-212ENST00000524330 CHL1O00533 1208 aa12.75□□□□□ -0.37
VPS13B-212ENST00000524330 SOS2Q07890 1332 aaPredicted RBP12.75□□□□□ -0.37
VPS13B-212ENST00000524330 TWISTNBQ3B726 338 aaPredicted RBP12.75□□□□□ -0.37
VPS13B-212ENST00000524330 C1orf141Q5JVX7 400 aa12.75□□□□□ -0.37
VPS13B-212ENST00000524330 DZIP1LQ8IYY4 767 aaKnown RBP12.75□□□□□ -0.37
VPS13B-212ENST00000524330 KIAA0232Q92628 1395 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms