RNA–Protein interactions for RNA: ENST00000524023.1

HDAC9-228, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,199 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-228ENST00000524023 METP08581 1390 aa13.96□□□□□ -0.17
HDAC9-228ENST00000524023 ZNF853P0CG23 659 aa13.96□□□□□ -0.17
HDAC9-228ENST00000524023 ZRANB1Q9UGI0 708 aa13.96□□□□□ -0.17
HDAC9-228ENST00000524023 PTCH1Q13635 1447 aa13.96□□□□□ -0.17
HDAC9-228ENST00000524023 MON2Q7Z3U7 1717 aa13.96□□□□□ -0.17
HDAC9-228ENST00000524023 PIK3R4Q99570 1358 aa13.96□□□□□ -0.17
HDAC9-228ENST00000524023 TSPYL6Q8N831 410 aa13.96□□□□□ -0.18
HDAC9-228ENST00000524023 ZBTB7BO15156 539 aaPredicted RBP13.95□□□□□ -0.18
HDAC9-228ENST00000524023 MLECQ14165 292 aa13.95□□□□□ -0.18
HDAC9-228ENST00000524023 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.95□□□□□ -0.18
HDAC9-228ENST00000524023 NUDT16Q96DE0 195 aaKnown RBP13.95□□□□□ -0.18
HDAC9-228ENST00000524023 CPS1P31327 1500 aa13.95□□□□□ -0.18
HDAC9-228ENST00000524023 KNDC1Q76NI1 1749 aa13.95□□□□□ -0.18
HDAC9-228ENST00000524023 TXNDC2Q86VQ3 553 aa13.95□□□□□ -0.18
HDAC9-228ENST00000524023 CHD1LQ86WJ1 897 aa13.95□□□□□ -0.18
HDAC9-228ENST00000524023 LNPKQ9C0E8 428 aa13.95□□□□□ -0.18
HDAC9-228ENST00000524023 MBIPQ9NS73 344 aa13.95□□□□□ -0.18
HDAC9-228ENST00000524023 COG3Q96JB2 828 aa13.94□□□□□ -0.18
HDAC9-228ENST00000524023 CHMP4BQ9H444 224 aaKnown RBP13.94□□□□□ -0.18
HDAC9-228ENST00000524023 AKAP12Q02952 1782 aa13.94□□□□□ -0.18
HDAC9-228ENST00000524023 RTN4Q9NQC3 1192 aaKnown RBP13.93□□□□□ -0.18
HDAC9-228ENST00000524023 CCDC61Q9Y6R9 512 aa13.93□□□□□ -0.18
HDAC9-228ENST00000524023 C3P01024 1663 aa13.93□□□□□ -0.18
HDAC9-228ENST00000524023 LMOD3Q0VAK6 560 aa13.93□□□□□ -0.18
HDAC9-228ENST00000524023 SIRT1Q96EB6 747 aa13.93□□□□□ -0.18
HDAC9-228ENST00000524023 NCKAP5LQ9HCH0 1330 aa13.93□□□□□ -0.18
HDAC9-228ENST00000524023 ITSN1Q15811 1721 aa13.93□□□□□ -0.18
HDAC9-228ENST00000524023 TECPR2O15040 1411 aa13.93□□□□□ -0.18
HDAC9-228ENST00000524023 RRS1Q15050 365 aaKnown RBP13.92□□□□□ -0.18
HDAC9-228ENST00000524023 GCC1Q96CN9 775 aa13.92□□□□□ -0.18
HDAC9-228ENST00000524023 CFAP44Q96MT7 982 aa13.92□□□□□ -0.18
HDAC9-228ENST00000524023 ABCC4O15439 1325 aa13.92□□□□□ -0.18
HDAC9-228ENST00000524023 ELL2O00472 640 aaPredicted RBP13.92□□□□□ -0.18
HDAC9-228ENST00000524023 TWISTNBQ3B726 338 aaPredicted RBP13.92□□□□□ -0.18
HDAC9-228ENST00000524023 SPRYD3Q8NCJ5 442 aa13.92□□□□□ -0.18
HDAC9-228ENST00000524023 RBM25P49756 843 aaKnown RBP13.9□□□□□ -0.18
HDAC9-228ENST00000524023 BMP2KLQ5H9B9 411 aa13.9□□□□□ -0.18
HDAC9-228ENST00000524023 C8orf58Q8NAV2 365 aa13.9□□□□□ -0.18
HDAC9-228ENST00000524023 C1orf115Q9H7X2 142 aa13.9□□□□□ -0.18
HDAC9-228ENST00000524023 ANKRD45Q5TZF3 282 aa13.9□□□□□ -0.18
HDAC9-228ENST00000524023 ZNF692Q9BU19 519 aaPredicted RBP13.9□□□□□ -0.18
HDAC9-228ENST00000524023 FAM83GA6ND36 823 aa13.89□□□□□ -0.19
HDAC9-228ENST00000524023 HDGFP51858 240 aaKnown RBP13.89□□□□□ -0.19
HDAC9-228ENST00000524023 HSCBQ8IWL3 235 aa13.89□□□□□ -0.19
HDAC9-228ENST00000524023 SIRT2Q8IXJ6 389 aa13.89□□□□□ -0.19
HDAC9-228ENST00000524023 CHMP5Q9NZZ3 219 aa13.89□□□□□ -0.19
HDAC9-228ENST00000524023 PRR36Q9H6K5 1346 aa13.88□□□□□ -0.19
HDAC9-228ENST00000524023 API5Q9BZZ5 524 aaKnown RBP13.88□□□□□ -0.19
HDAC9-228ENST00000524023 NRKQ7Z2Y5 1582 aa13.88□□□□□ -0.19
HDAC9-228ENST00000524023 ESF1Q9H501 851 aaKnown RBP13.88□□□□□ -0.19
HDAC9-228ENST00000524023 MCM4P33991 863 aa13.87□□□□□ -0.19
HDAC9-228ENST00000524023 DCTN1Q14203 1278 aa13.87□□□□□ -0.19
HDAC9-228ENST00000524023 SNX21Q969T3 373 aa13.86□□□□□ -0.19
HDAC9-228ENST00000524023 NCOA3Q9Y6Q9 1424 aa13.86□□□□□ -0.19
HDAC9-228ENST00000524023 KIF24Q5T7B8 1368 aa13.86□□□□□ -0.19
HDAC9-228ENST00000524023 EIF4A2Q14240 407 aaKnown RBP13.85□□□□□ -0.19
HDAC9-228ENST00000524023 ROBO2Q9HCK4 1378 aa13.85□□□□□ -0.19
HDAC9-228ENST00000524023 AEBP1Q8IUX7 1158 aa13.85□□□□□ -0.19
HDAC9-228ENST00000524023 TNRQ92752 1358 aa13.84□□□□□ -0.19
HDAC9-228ENST00000524023 UBR1Q8IWV7 1749 aa13.84□□□□□ -0.19
HDAC9-228ENST00000524023 TTC21BQ7Z4L5 1316 aa13.84□□□□□ -0.19
HDAC9-228ENST00000524023 SULT6B1Q6IMI4 303 aa13.84□□□□□ -0.19
HDAC9-228ENST00000524023 TMEM2Q9UHN6 1383 aa13.84□□□□□ -0.19
HDAC9-228ENST00000524023 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.83□□□□□ -0.19
HDAC9-228ENST00000524023 DDIT3P35638 169 aa13.83□□□□□ -0.19
HDAC9-228ENST00000524023 TOPAZ1Q8N9V7 1692 aa13.83□□□□□ -0.2
HDAC9-228ENST00000524023 TBC1D9Q6ZT07 1266 aa13.83□□□□□ -0.2
HDAC9-228ENST00000524023 KIF2CQ99661 725 aa13.83□□□□□ -0.2
HDAC9-228ENST00000524023 OVOS2A0A0J9YW53 1432 aa13.83□□□□□ -0.2
HDAC9-228ENST00000524023 OVOS2Q6IE36 1432 aa13.83□□□□□ -0.2
HDAC9-228ENST00000524023 ADAMTS13Q76LX8 1427 aa13.83□□□□□ -0.2
HDAC9-228ENST00000524023 L1TD1Q5T7N2 865 aaKnown RBP13.82□□□□□ -0.2
HDAC9-228ENST00000524023 INTS3Q68E01 1043 aaKnown RBP13.82□□□□□ -0.2
HDAC9-228ENST00000524023 ACEP12821 1306 aa13.82□□□□□ -0.2
HDAC9-228ENST00000524023 NALCNQ8IZF0 1738 aa13.81□□□□□ -0.2
HDAC9-228ENST00000524023 PLEKHG3A1L390 1219 aa13.81□□□□□ -0.2
HDAC9-228ENST00000524023 CHL1O00533 1208 aa13.81□□□□□ -0.2
HDAC9-228ENST00000524023 HAP1P54257 671 aaPredicted RBP13.81□□□□□ -0.2
HDAC9-228ENST00000524023 PEAK1Q9H792 1746 aa13.81□□□□□ -0.2
HDAC9-228ENST00000524023 DCTPP1Q9H773 170 aa13.81□□□□□ -0.2
HDAC9-228ENST00000524023 RGS12O14924 1447 aa13.8□□□□□ -0.2
HDAC9-228ENST00000524023 RGPD1P0DJD0 1748 aa13.8□□□□□ -0.2
HDAC9-228ENST00000524023 KRT24Q2M2I5 525 aa13.8□□□□□ -0.2
HDAC9-228ENST00000524023 KIF13AQ9H1H9 1805 aa13.8□□□□□ -0.2
HDAC9-228ENST00000524023 KIAA0232Q92628 1395 aa13.8□□□□□ -0.2
HDAC9-228ENST00000524023 USP6P35125 1406 aa13.79□□□□□ -0.2
HDAC9-228ENST00000524023 TRAK2O60296 914 aa13.79□□□□□ -0.2
HDAC9-228ENST00000524023 CDC45O75419 566 aa13.79□□□□□ -0.2
HDAC9-228ENST00000524023 MCM10Q7L590 875 aa13.79□□□□□ -0.2
HDAC9-228ENST00000524023 PLEKHM2Q8IWE5 1019 aa13.79□□□□□ -0.2
HDAC9-228ENST00000524023 HSP90AB1P08238 724 aaKnown RBP13.79□□□□□ -0.2
HDAC9-228ENST00000524023 GSPT1P15170 499 aaKnown RBP13.79□□□□□ -0.2
HDAC9-228ENST00000524023 HSP90AB2PQ58FF8 381 aa13.79□□□□□ -0.2
HDAC9-228ENST00000524023 CIZ1Q9ULV3 898 aaPredicted RBP13.79□□□□□ -0.2
HDAC9-228ENST00000524023 USP31Q70CQ4 1352 aa13.79□□□□□ -0.2
HDAC9-228ENST00000524023 ATP10DQ9P241 1426 aa13.78□□□□□ -0.2
HDAC9-228ENST00000524023 ANKRD44Q8N8A2 993 aa13.78□□□□□ -0.2
HDAC9-228ENST00000524023 NUTM2FA1L443 756 aa13.78□□□□□ -0.2
HDAC9-228ENST00000524023 FSD2A1L4K1 749 aa13.78□□□□□ -0.2
HDAC9-228ENST00000524023 DDX11L8A8MPP1 907 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms