RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 C1orf141Q5JVX7 400 aa12.64□□□□□ -0.39
MCF2-209ENST00000520602 IL13P35225 146 aa12.63□□□□□ -0.39
MCF2-209ENST00000520602 CHD1LQ86WJ1 897 aa12.63□□□□□ -0.39
MCF2-209ENST00000520602 USP35Q9P2H5 1018 aa12.63□□□□□ -0.39
MCF2-209ENST00000520602 TMEM2Q9UHN6 1383 aa12.62□□□□□ -0.39
MCF2-209ENST00000520602 FOXO3O43524 673 aa12.62□□□□□ -0.39
MCF2-209ENST00000520602 KCNA6P17658 529 aa12.62□□□□□ -0.39
MCF2-209ENST00000520602 PLEKHF1Q96S99 279 aa12.62□□□□□ -0.39
MCF2-209ENST00000520602 NCLP19338 710 aaKnown RBP12.62□□□□□ -0.39
MCF2-209ENST00000520602 VAMP4O75379 141 aa12.62□□□□□ -0.39
MCF2-209ENST00000520602 PHF8Q9UPP1 1060 aa12.61□□□□□ -0.39
MCF2-209ENST00000520602 DIP2CQ9Y2E4 1556 aa12.61□□□□□ -0.39
MCF2-209ENST00000520602 VWDEQ8N2E2 1590 aa12.61□□□□□ -0.39
MCF2-209ENST00000520602 GLI2P10070 1586 aa12.61□□□□□ -0.39
MCF2-209ENST00000520602 F6X3S4 739 aa12.6□□□□□ -0.39
MCF2-209ENST00000520602 TPRNQ4KMQ1 711 aa12.6□□□□□ -0.39
MCF2-209ENST00000520602 GCC1Q96CN9 775 aa12.6□□□□□ -0.39
MCF2-209ENST00000520602 IQGAP1P46940 1657 aa12.6□□□□□ -0.39
MCF2-209ENST00000520602 FRAT2O75474 233 aaPredicted RBP12.6□□□□□ -0.39
MCF2-209ENST00000520602 SEC24BO95487 1268 aa12.6□□□□□ -0.39
MCF2-209ENST00000520602 RILPL2Q969X0 211 aa12.6□□□□□ -0.39
MCF2-209ENST00000520602 ZFYVE9O95405 1425 aa12.6□□□□□ -0.39
MCF2-209ENST00000520602 EIF5BO60841 1220 aaKnown RBP12.6□□□□□ -0.39
MCF2-209ENST00000520602 EDC4Q6P2E9 1401 aaKnown RBP12.6□□□□□ -0.39
MCF2-209ENST00000520602 NLRP2Q9NX02 1062 aa12.59□□□□□ -0.39
MCF2-209ENST00000520602 GOLGA6L22H0YM25 854 aa12.59□□□□□ -0.39
MCF2-209ENST00000520602 DEPDC5O75140 1603 aa12.59□□□□□ -0.39
MCF2-209ENST00000520602 CCDC30Q5VVM6 783 aa12.59□□□□□ -0.39
MCF2-209ENST00000520602 MAP3K19Q56UN5 1328 aa12.58□□□□□ -0.39
MCF2-209ENST00000520602 ATF3P18847 181 aa12.58□□□□□ -0.39
MCF2-209ENST00000520602 HDGFL1Q5TGJ6 251 aa12.58□□□□□ -0.39
MCF2-209ENST00000520602 TBX22Q9Y458 520 aa12.58□□□□□ -0.39
MCF2-209ENST00000520602 FRMPD1Q5SYB0 1578 aa12.58□□□□□ -0.4
MCF2-209ENST00000520602 GNAT3A8MTJ3 354 aa12.58□□□□□ -0.4
MCF2-209ENST00000520602 MRPL50Q8N5N7 158 aaKnown RBP12.58□□□□□ -0.4
MCF2-209ENST00000520602 MROH1Q8NDA8 1641 aa12.58□□□□□ -0.4
MCF2-209ENST00000520602 PRR36Q9H6K5 1346 aa12.58□□□□□ -0.4
MCF2-209ENST00000520602 NOL8Q76FK4 1167 aaKnown RBP12.58□□□□□ -0.4
MCF2-209ENST00000520602 ZNF330Q9Y3S2 320 aaPredicted RBP12.58□□□□□ -0.4
MCF2-209ENST00000520602 CAMSAP1Q5T5Y3 1602 aa12.58□□□□□ -0.4
MCF2-209ENST00000520602 ZC3H6P61129 1189 aaKnown RBP12.57□□□□□ -0.4
MCF2-209ENST00000520602 ZNF530Q6P9A1 599 aaPredicted RBP12.57□□□□□ -0.4
MCF2-209ENST00000520602 A2ML1A8K2U0 1454 aa12.57□□□□□ -0.4
MCF2-209ENST00000520602 MTHFSDQ2M296 383 aaKnown RBP12.57□□□□□ -0.4
MCF2-209ENST00000520602 ZBTB40Q9NUA8 1239 aa12.57□□□□□ -0.4
MCF2-209ENST00000520602 ROBO2Q9HCK4 1378 aa12.57□□□□□ -0.4
MCF2-209ENST00000520602 SETBP1Q9Y6X0 1596 aa12.56□□□□□ -0.4
MCF2-209ENST00000520602 TULP4Q9NRJ4 1543 aa12.56□□□□□ -0.4
MCF2-209ENST00000520602 QRICH2Q9H0J4 1663 aa12.56□□□□□ -0.4
MCF2-209ENST00000520602 NRXN1Q9ULB1 1477 aa12.56□□□□□ -0.4
MCF2-209ENST00000520602 AIMP1Q12904 312 aaKnown RBP12.56□□□□□ -0.4
MCF2-209ENST00000520602 GSE1Q14687 1217 aa12.56□□□□□ -0.4
MCF2-209ENST00000520602 CHMP4AQ9BY43 222 aa12.56□□□□□ -0.4
MCF2-209ENST00000520602 HDAC1Q13547 482 aaPredicted RBP12.56□□□□□ -0.4
MCF2-209ENST00000520602 EYA1Q99502 592 aa12.56□□□□□ -0.4
MCF2-209ENST00000520602 C9orf78Q9NZ63 289 aaPredicted RBP12.56□□□□□ -0.4
MCF2-209ENST00000520602 MROH2AA6NES4 1674 aa12.55□□□□□ -0.4
MCF2-209ENST00000520602 SMARCA5O60264 1052 aaPredicted RBP12.55□□□□□ -0.4
MCF2-209ENST00000520602 KCNJ4P48050 445 aa12.55□□□□□ -0.4
MCF2-209ENST00000520602 RAPGEF4Q8WZA2 1011 aa12.55□□□□□ -0.4
MCF2-209ENST00000520602 NEXMIFQ5QGS0 1516 aa12.55□□□□□ -0.4
MCF2-209ENST00000520602 UBTFL1P0CB47 393 aaPredicted RBP12.55□□□□□ -0.4
MCF2-209ENST00000520602 CDC45O75419 566 aa12.55□□□□□ -0.4
MCF2-209ENST00000520602 MCCP23508 829 aa12.55□□□□□ -0.4
MCF2-209ENST00000520602 PLEKHO1Q53GL0 409 aaPredicted RBP12.55□□□□□ -0.4
MCF2-209ENST00000520602 TTC21AQ8NDW8 1320 aa12.54□□□□□ -0.4
MCF2-209ENST00000520602 ADGRB1O14514 1584 aa12.54□□□□□ -0.4
MCF2-209ENST00000520602 ALKQ9UM73 1620 aa12.54□□□□□ -0.4
MCF2-209ENST00000520602 GNAI2P04899 355 aa12.54□□□□□ -0.4
MCF2-209ENST00000520602 ANP32BQ92688 251 aaKnown RBP12.54□□□□□ -0.4
MCF2-209ENST00000520602 EXOC6BQ9Y2D4 811 aa12.54□□□□□ -0.4
MCF2-209ENST00000520602 PLEKHG3A1L390 1219 aa12.54□□□□□ -0.4
MCF2-209ENST00000520602 GNAI3P08754 354 aa12.53□□□□□ -0.4
MCF2-209ENST00000520602 PHF23Q9BUL5 403 aaPredicted RBP12.53□□□□□ -0.4
MCF2-209ENST00000520602 CCT4P50991 539 aaKnown RBP12.53□□□□□ -0.4
MCF2-209ENST00000520602 ARHGAP45Q92619 1136 aa12.53□□□□□ -0.4
MCF2-209ENST00000520602 SIRT1Q96EB6 747 aa12.53□□□□□ -0.4
MCF2-209ENST00000520602 MPRIPQ6WCQ1 1025 aa12.53□□□□□ -0.4
MCF2-209ENST00000520602 TAF7Q15545 349 aaPredicted RBP12.52□□□□□ -0.4
MCF2-209ENST00000520602 SURF6O75683 361 aaKnown RBP12.52□□□□□ -0.41
MCF2-209ENST00000520602 KIAA1211Q6ZU35 1233 aa12.52□□□□□ -0.41
MCF2-209ENST00000520602 RPAP2Q8IXW5 612 aaPredicted RBP12.52□□□□□ -0.41
MCF2-209ENST00000520602 MEIS3Q99687 375 aa12.52□□□□□ -0.41
MCF2-209ENST00000520602 KIAA1210Q9ULL0 1709 aa12.52□□□□□ -0.41
MCF2-209ENST00000520602 ZBTB7BO15156 539 aaPredicted RBP12.52□□□□□ -0.41
MCF2-209ENST00000520602 FOXD4L5Q5VV16 416 aaPredicted RBP12.52□□□□□ -0.41
MCF2-209ENST00000520602 INTS3Q68E01 1043 aaKnown RBP12.52□□□□□ -0.41
MCF2-209ENST00000520602 FOXD4L4Q8WXT5 416 aaPredicted RBP12.52□□□□□ -0.41
MCF2-209ENST00000520602 CHMP5Q9NZZ3 219 aa12.52□□□□□ -0.41
MCF2-209ENST00000520602 CHMP3Q9Y3E7 222 aa12.52□□□□□ -0.41
MCF2-209ENST00000520602 NUCB1Q02818 461 aa12.51□□□□□ -0.41
MCF2-209ENST00000520602 NCBP3Q53F19 620 aaKnown RBP12.51□□□□□ -0.41
MCF2-209ENST00000520602 GBP4Q96PP9 640 aa12.51□□□□□ -0.41
MCF2-209ENST00000520602 PIK3C2BO00750 1634 aa12.51□□□□□ -0.41
MCF2-209ENST00000520602 PTPRMP28827 1452 aa12.51□□□□□ -0.41
MCF2-209ENST00000520602 FLT4P35916 1363 aa12.51□□□□□ -0.41
MCF2-209ENST00000520602 SMC5Q8IY18 1101 aa12.51□□□□□ -0.41
MCF2-209ENST00000520602 BTBD11A6QL63 1104 aa12.5□□□□□ -0.41
MCF2-209ENST00000520602 KCNH5Q8NCM2 988 aa12.5□□□□□ -0.41
MCF2-209ENST00000520602 TBC1D2Q9BYX2 928 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms