RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 NUTM2BA6NNL0 878 aaPredicted RBP15.79■□□□□ 0.12
TCOF1-213ENST00000514442 NUTM2EB1AL46 878 aaPredicted RBP15.79■□□□□ 0.12
TCOF1-213ENST00000514442 K7ELQ4 463 aaPredicted RBP15.79■□□□□ 0.12
TCOF1-213ENST00000514442 NUTM2AQ8IVF1 878 aaPredicted RBP15.79■□□□□ 0.12
TCOF1-213ENST00000514442 PDCL2Q8N4E4 241 aa15.79■□□□□ 0.12
TCOF1-213ENST00000514442 PLCH2O75038 1416 aa15.79■□□□□ 0.12
TCOF1-213ENST00000514442 NFE2L2Q16236 605 aa15.79■□□□□ 0.12
TCOF1-213ENST00000514442 MCM10Q7L590 875 aa15.79■□□□□ 0.12
TCOF1-213ENST00000514442 KDM5BQ9UGL1 1544 aa15.79■□□□□ 0.12
TCOF1-213ENST00000514442 AMOTL2Q9Y2J4 779 aa15.79■□□□□ 0.12
TCOF1-213ENST00000514442 KIAA0556O60303 1618 aa15.79■□□□□ 0.12
TCOF1-213ENST00000514442 OFD1O75665 1012 aa15.79■□□□□ 0.12
TCOF1-213ENST00000514442 SCAF11Q99590 1463 aaKnown RBP15.78■□□□□ 0.12
TCOF1-213ENST00000514442 MYL6BP14649 208 aa15.78■□□□□ 0.12
TCOF1-213ENST00000514442 MCM5P33992 734 aa15.78■□□□□ 0.12
TCOF1-213ENST00000514442 FOSBP53539 338 aa15.78■□□□□ 0.12
TCOF1-213ENST00000514442 MVPQ14764 893 aaKnown RBP15.78■□□□□ 0.12
TCOF1-213ENST00000514442 FBXW7Q969H0 707 aa15.78■□□□□ 0.12
TCOF1-213ENST00000514442 GNAI2P04899 355 aa15.78■□□□□ 0.12
TCOF1-213ENST00000514442 PRDM11Q9NQV5 511 aa15.78■□□□□ 0.12
TCOF1-213ENST00000514442 CABP4P57796 275 aa15.78■□□□□ 0.12
TCOF1-213ENST00000514442 USHBP1Q8N6Y0 703 aa15.78■□□□□ 0.12
TCOF1-213ENST00000514442 CLASRPQ8N2M8 674 aaKnown RBP15.77■□□□□ 0.12
TCOF1-213ENST00000514442 WASHC4Q2M389 1173 aa15.77■□□□□ 0.12
TCOF1-213ENST00000514442 RNF20Q5VTR2 975 aa15.77■□□□□ 0.12
TCOF1-213ENST00000514442 TNPO1Q92973 898 aaKnown RBP15.77■□□□□ 0.11
TCOF1-213ENST00000514442 ATP6V1DQ9Y5K8 247 aa15.77■□□□□ 0.11
TCOF1-213ENST00000514442 C14orf93Q9H972 538 aaKnown RBP15.77■□□□□ 0.11
TCOF1-213ENST00000514442 WASLO00401 505 aaPredicted RBP15.76■□□□□ 0.11
TCOF1-213ENST00000514442 RAD21O60216 631 aa15.76■□□□□ 0.11
TCOF1-213ENST00000514442 TBC1D32Q96NH3 1257 aa15.76■□□□□ 0.11
TCOF1-213ENST00000514442 SYNE3Q6ZMZ3 975 aa15.76■□□□□ 0.11
TCOF1-213ENST00000514442 FSD1Q9BTV5 496 aa15.76■□□□□ 0.11
TCOF1-213ENST00000514442 IFT57Q9NWB7 429 aa15.76■□□□□ 0.11
TCOF1-213ENST00000514442 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.76■□□□□ 0.11
TCOF1-213ENST00000514442 VPS37CA5D8V6 355 aaPredicted RBP15.76■□□□□ 0.11
TCOF1-213ENST00000514442 TPM4P67936 248 aa15.76■□□□□ 0.11
TCOF1-213ENST00000514442 AKAP17AQ02040 695 aaKnown RBP15.76■□□□□ 0.11
TCOF1-213ENST00000514442 DNAJC2Q99543 621 aaKnown RBP15.76■□□□□ 0.11
TCOF1-213ENST00000514442 GPS2Q13227 327 aa15.75■□□□□ 0.11
TCOF1-213ENST00000514442 VPS53Q5VIR6 699 aa15.75■□□□□ 0.11
TCOF1-213ENST00000514442 SIL1Q9H173 461 aa15.75■□□□□ 0.11
TCOF1-213ENST00000514442 TRAPPC8Q9Y2L5 1435 aa15.75■□□□□ 0.11
TCOF1-213ENST00000514442 CPLX1O14810 134 aa15.75■□□□□ 0.11
TCOF1-213ENST00000514442 WDR62O43379 1518 aa15.74■□□□□ 0.11
TCOF1-213ENST00000514442 CCDC34Q96HJ3 373 aa15.74■□□□□ 0.11
TCOF1-213ENST00000514442 BTBD11A6QL63 1104 aa15.74■□□□□ 0.11
TCOF1-213ENST00000514442 GCC1Q96CN9 775 aa15.74■□□□□ 0.11
TCOF1-213ENST00000514442 NOL10Q9BSC4 688 aaKnown RBP15.74■□□□□ 0.11
TCOF1-213ENST00000514442 LETM1O95202 739 aaPredicted RBP15.74■□□□□ 0.11
TCOF1-213ENST00000514442 SPG7Q9UQ90 795 aa15.74■□□□□ 0.11
TCOF1-213ENST00000514442 ITSN2Q9NZM3 1697 aa15.74■□□□□ 0.11
TCOF1-213ENST00000514442 FBLN1P23142 703 aa15.74■□□□□ 0.11
TCOF1-213ENST00000514442 RABEP1Q15276 862 aa15.74■□□□□ 0.11
TCOF1-213ENST00000514442 CNTROBQ8N137 903 aa15.74■□□□□ 0.11
TCOF1-213ENST00000514442 GTPBP4Q9BZE4 634 aaKnown RBP15.74■□□□□ 0.11
TCOF1-213ENST00000514442 SRCIN1Q9C0H9 1055 aa15.74■□□□□ 0.11
TCOF1-213ENST00000514442 MARCH6O60337 910 aa15.73■□□□□ 0.11
TCOF1-213ENST00000514442 CT47B1P0C2W7 299 aaPredicted RBP15.73■□□□□ 0.11
TCOF1-213ENST00000514442 TRDNQ13061 729 aa15.73■□□□□ 0.11
TCOF1-213ENST00000514442 TMEM57Q8N5G2 664 aa15.73■□□□□ 0.11
TCOF1-213ENST00000514442 CGNQ9P2M7 1197 aaKnown RBP15.73■□□□□ 0.11
TCOF1-213ENST00000514442 FYB1O15117 783 aa15.73■□□□□ 0.11
TCOF1-213ENST00000514442 CCDC94Q9BW85 323 aaPredicted RBP15.73■□□□□ 0.11
TCOF1-213ENST00000514442 CWC22Q9HCG8 908 aaKnown RBP15.73■□□□□ 0.11
TCOF1-213ENST00000514442 FOXO3O43524 673 aa15.73■□□□□ 0.11
TCOF1-213ENST00000514442 CCT4P50991 539 aaKnown RBP15.73■□□□□ 0.11
TCOF1-213ENST00000514442 KIF6Q6ZMV9 814 aa15.73■□□□□ 0.11
TCOF1-213ENST00000514442 EIF4G3O43432 1585 aaKnown RBP15.73■□□□□ 0.11
TCOF1-213ENST00000514442 SMC3Q9UQE7 1217 aa15.73■□□□□ 0.11
TCOF1-213ENST00000514442 MAP4K4O95819 1239 aaPredicted RBP15.72■□□□□ 0.11
TCOF1-213ENST00000514442 PPP4R3BQ5MIZ7 849 aa15.72■□□□□ 0.11
TCOF1-213ENST00000514442 NFXL1Q6ZNB6 911 aa15.72■□□□□ 0.11
TCOF1-213ENST00000514442 NOM1Q5C9Z4 860 aaKnown RBP15.72■□□□□ 0.11
TCOF1-213ENST00000514442 CPLX2Q6PUV4 134 aaKnown RBP15.72■□□□□ 0.11
TCOF1-213ENST00000514442 GNAT3A8MTJ3 354 aa15.71■□□□□ 0.11
TCOF1-213ENST00000514442 PIP4K2BP78356 416 aa15.71■□□□□ 0.11
TCOF1-213ENST00000514442 CCDC27Q2M243 656 aa15.71■□□□□ 0.11
TCOF1-213ENST00000514442 DUOX2Q9NRD8 1548 aa15.71■□□□□ 0.1
TCOF1-213ENST00000514442 PHF8Q9UPP1 1060 aa15.7■□□□□ 0.1
TCOF1-213ENST00000514442 WDR7Q9Y4E6 1490 aa15.7■□□□□ 0.1
TCOF1-213ENST00000514442 AMOTL1Q8IY63 956 aa15.7■□□□□ 0.1
TCOF1-213ENST00000514442 GOLGA6L19H0YKK7 550 aa15.7■□□□□ 0.1
TCOF1-213ENST00000514442 TERF1P54274 439 aa15.7■□□□□ 0.1
TCOF1-213ENST00000514442 SSH1Q8WYL5 1049 aa15.7■□□□□ 0.1
TCOF1-213ENST00000514442 CWC15Q9P013 229 aaKnown RBP15.7■□□□□ 0.1
TCOF1-213ENST00000514442 ARGLU1Q9NWB6 273 aaPredicted RBP15.69■□□□□ 0.1
TCOF1-213ENST00000514442 KDM4AO75164 1064 aa15.69■□□□□ 0.1
TCOF1-213ENST00000514442 TRIM29Q14134 588 aa15.69■□□□□ 0.1
TCOF1-213ENST00000514442 DUSP27Q5VZP5 1158 aa15.69■□□□□ 0.1
TCOF1-213ENST00000514442 CFAP43Q8NDM7 1665 aa15.69■□□□□ 0.1
TCOF1-213ENST00000514442 A2MP01023 1474 aa15.69■□□□□ 0.1
TCOF1-213ENST00000514442 PRIMPOLQ96LW4 560 aa15.69■□□□□ 0.1
TCOF1-213ENST00000514442 LRRCC1Q9C099 1032 aa15.69■□□□□ 0.1
TCOF1-213ENST00000514442 HS1BP3Q53T59 392 aa15.68■□□□□ 0.1
TCOF1-213ENST00000514442 RARSP54136 660 aaKnown RBP15.68■□□□□ 0.1
TCOF1-213ENST00000514442 KCNH5Q8NCM2 988 aa15.68■□□□□ 0.1
TCOF1-213ENST00000514442 NEK4P51957 841 aa15.68■□□□□ 0.1
TCOF1-213ENST00000514442 RALYLQ86SE5 291 aaKnown RBP15.68■□□□□ 0.1
TCOF1-213ENST00000514442 CHD1LQ86WJ1 897 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms