RNA–Protein interactions for RNA: ENST00000514439.1

CPNE4-211, Transcript of copine 4, humanhuman

TSL 1 (best)

Gene CPNE4, Length 2,312 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-211ENST00000514439 DIP2AQ14689 1571 aa10.52□□□□□ -0.73
CPNE4-211ENST00000514439 MVPQ14764 893 aaKnown RBP10.51□□□□□ -0.73
CPNE4-211ENST00000514439 FTSJ3Q8IY81 847 aaKnown RBP10.51□□□□□ -0.73
CPNE4-211ENST00000514439 DZIP1LQ8IYY4 767 aaKnown RBP10.51□□□□□ -0.73
CPNE4-211ENST00000514439 PCDHB15Q9Y5E8 787 aa10.51□□□□□ -0.73
CPNE4-211ENST00000514439 TRIM27P14373 513 aa10.51□□□□□ -0.73
CPNE4-211ENST00000514439 FAM161AQ3B820 660 aa10.51□□□□□ -0.73
CPNE4-211ENST00000514439 C8orf34Q49A92 452 aa10.51□□□□□ -0.73
CPNE4-211ENST00000514439 PMFBP1Q8TBY8 1022 aa10.51□□□□□ -0.73
CPNE4-211ENST00000514439 ZBTB47Q9UFB7 747 aaPredicted RBP10.5□□□□□ -0.73
CPNE4-211ENST00000514439 THUMPD2Q9BTF0 503 aaKnown RBP10.5□□□□□ -0.73
CPNE4-211ENST00000514439 SSH2Q76I76 1423 aa10.5□□□□□ -0.73
CPNE4-211ENST00000514439 CALD1Q05682 793 aaKnown RBP10.49□□□□□ -0.73
CPNE4-211ENST00000514439 ATF7IPQ6VMQ6 1270 aa10.49□□□□□ -0.73
CPNE4-211ENST00000514439 LAS1LQ9Y4W2 734 aaKnown RBP10.49□□□□□ -0.73
CPNE4-211ENST00000514439 KIF16BQ96L93 1317 aa10.49□□□□□ -0.73
CPNE4-211ENST00000514439 XRN1Q8IZH2 1706 aaKnown RBP10.49□□□□□ -0.73
CPNE4-211ENST00000514439 EIF4A2Q14240 407 aaKnown RBP10.49□□□□□ -0.73
CPNE4-211ENST00000514439 NOB1Q9ULX3 412 aaKnown RBP10.49□□□□□ -0.73
CPNE4-211ENST00000514439 NALCNQ8IZF0 1738 aa10.48□□□□□ -0.73
CPNE4-211ENST00000514439 CEP170BQ9Y4F5 1589 aaPredicted RBP10.48□□□□□ -0.73
CPNE4-211ENST00000514439 USP31Q70CQ4 1352 aa10.48□□□□□ -0.73
CPNE4-211ENST00000514439 ALDH1L2Q3SY69 923 aa10.48□□□□□ -0.73
CPNE4-211ENST00000514439 IFT57Q9NWB7 429 aa10.47□□□□□ -0.73
CPNE4-211ENST00000514439 TTC21AQ8NDW8 1320 aa10.47□□□□□ -0.73
CPNE4-211ENST00000514439 ZNF853P0CG23 659 aa10.47□□□□□ -0.73
CPNE4-211ENST00000514439 GNAI1P63096 354 aa10.47□□□□□ -0.73
CPNE4-211ENST00000514439 LMOD3Q0VAK6 560 aa10.47□□□□□ -0.73
CPNE4-211ENST00000514439 AEBP1Q8IUX7 1158 aa10.47□□□□□ -0.73
CPNE4-211ENST00000514439 ITPRIPQ8IWB1 547 aa10.47□□□□□ -0.73
CPNE4-211ENST00000514439 PEAK1Q9H792 1746 aa10.47□□□□□ -0.73
CPNE4-211ENST00000514439 KCNA6P17658 529 aa10.46□□□□□ -0.73
CPNE4-211ENST00000514439 ZNF428Q96B54 188 aa10.46□□□□□ -0.73
CPNE4-211ENST00000514439 RWDD1Q9H446 243 aaPredicted RBP10.46□□□□□ -0.73
CPNE4-211ENST00000514439 MBIPQ9NS73 344 aa10.46□□□□□ -0.73
CPNE4-211ENST00000514439 DDX19BQ9UMR2 479 aa10.46□□□□□ -0.73
CPNE4-211ENST00000514439 SOX12O15370 315 aa10.46□□□□□ -0.74
CPNE4-211ENST00000514439 IPO8O15397 1037 aaKnown RBP10.46□□□□□ -0.74
CPNE4-211ENST00000514439 TMEM57Q8N5G2 664 aa10.46□□□□□ -0.74
CPNE4-211ENST00000514439 NGDNQ8NEJ9 315 aaKnown RBP10.46□□□□□ -0.74
CPNE4-211ENST00000514439 FAM83GA6ND36 823 aa10.45□□□□□ -0.74
CPNE4-211ENST00000514439 HSP90AB2PQ58FF8 381 aa10.45□□□□□ -0.74
CPNE4-211ENST00000514439 SULT6B1Q6IMI4 303 aa10.45□□□□□ -0.74
CPNE4-211ENST00000514439 PIK3R4Q99570 1358 aa10.45□□□□□ -0.74
CPNE4-211ENST00000514439 VAMP4O75379 141 aa10.45□□□□□ -0.74
CPNE4-211ENST00000514439 BRPF1P55201 1214 aaPredicted RBP10.45□□□□□ -0.74
CPNE4-211ENST00000514439 TSPYL6Q8N831 410 aa10.45□□□□□ -0.74
CPNE4-211ENST00000514439 CFAP44Q96MT7 982 aa10.45□□□□□ -0.74
CPNE4-211ENST00000514439 ANKARQ7Z5J8 1434 aa10.45□□□□□ -0.74
CPNE4-211ENST00000514439 DLG5Q8TDM6 1919 aa10.45□□□□□ -0.74
CPNE4-211ENST00000514439 RIMS1Q86UR5 1692 aaKnown RBP10.44□□□□□ -0.74
CPNE4-211ENST00000514439 PDZRN3Q9UPQ7 1066 aa10.44□□□□□ -0.74
CPNE4-211ENST00000514439 MAP3K19Q56UN5 1328 aa10.44□□□□□ -0.74
CPNE4-211ENST00000514439 DCTN1Q14203 1278 aa10.44□□□□□ -0.74
CPNE4-211ENST00000514439 DDRGK1Q96HY6 314 aa10.44□□□□□ -0.74
CPNE4-211ENST00000514439 RGPD8O14715 1765 aaPredicted RBP10.43□□□□□ -0.74
CPNE4-211ENST00000514439 RGPD1P0DJD0 1748 aa10.43□□□□□ -0.74
CPNE4-211ENST00000514439 MRPL50Q8N5N7 158 aaKnown RBP10.43□□□□□ -0.74
CPNE4-211ENST00000514439 ELL2O00472 640 aaPredicted RBP10.42□□□□□ -0.74
CPNE4-211ENST00000514439 TWISTNBQ3B726 338 aaPredicted RBP10.42□□□□□ -0.74
CPNE4-211ENST00000514439 ZBTB40Q9NUA8 1239 aa10.42□□□□□ -0.74
CPNE4-211ENST00000514439 SBNO1A3KN83 1393 aa10.42□□□□□ -0.74
CPNE4-211ENST00000514439 FLT4P35916 1363 aa10.42□□□□□ -0.74
CPNE4-211ENST00000514439 PIK3C2AO00443 1686 aa10.42□□□□□ -0.74
CPNE4-211ENST00000514439 HDAC1Q13547 482 aaPredicted RBP10.42□□□□□ -0.74
CPNE4-211ENST00000514439 ARHGEF10O15013 1369 aa10.42□□□□□ -0.74
CPNE4-211ENST00000514439 FMN2Q9NZ56 1722 aa10.42□□□□□ -0.74
CPNE4-211ENST00000514439 C8orf58Q8NAV2 365 aa10.41□□□□□ -0.74
CPNE4-211ENST00000514439 VIRMAQ69YN4 1812 aaKnown RBP10.41□□□□□ -0.74
CPNE4-211ENST00000514439 ANKLE2Q86XL3 938 aa10.41□□□□□ -0.74
CPNE4-211ENST00000514439 ARHGAP45Q92619 1136 aa10.41□□□□□ -0.74
CPNE4-211ENST00000514439 NBR1Q14596 966 aa10.4□□□□□ -0.74
CPNE4-211ENST00000514439 ZNF142P52746 1687 aaPredicted RBP10.4□□□□□ -0.74
CPNE4-211ENST00000514439 AMPHP49418 695 aa10.4□□□□□ -0.74
CPNE4-211ENST00000514439 NLRP6P59044 892 aa10.4□□□□□ -0.74
CPNE4-211ENST00000514439 MCM10Q7L590 875 aa10.4□□□□□ -0.74
CPNE4-211ENST00000514439 ABCC4O15439 1325 aa10.39□□□□□ -0.75
CPNE4-211ENST00000514439 USP19O94966 1318 aa10.39□□□□□ -0.75
CPNE4-211ENST00000514439 KDRP35968 1356 aa10.38□□□□□ -0.75
CPNE4-211ENST00000514439 CHL1O00533 1208 aa10.38□□□□□ -0.75
CPNE4-211ENST00000514439 SEC24BO95487 1268 aa10.38□□□□□ -0.75
CPNE4-211ENST00000514439 NUTM2GQ5VZR2 741 aa10.38□□□□□ -0.75
CPNE4-211ENST00000514439 SMC5Q8IY18 1101 aa10.38□□□□□ -0.75
CPNE4-211ENST00000514439 IGSF1Q8N6C5 1336 aa10.38□□□□□ -0.75
CPNE4-211ENST00000514439 ADAMTSL3P82987 1691 aa10.38□□□□□ -0.75
CPNE4-211ENST00000514439 EYA1Q99502 592 aa10.38□□□□□ -0.75
CPNE4-211ENST00000514439 CHD2O14647 1828 aaKnown RBP10.37□□□□□ -0.75
CPNE4-211ENST00000514439 MARF1Q9Y4F3 1742 aaKnown RBP10.37□□□□□ -0.75
CPNE4-211ENST00000514439 ZBTB7BO15156 539 aaPredicted RBP10.37□□□□□ -0.75
CPNE4-211ENST00000514439 FOXO3O43524 673 aa10.37□□□□□ -0.75
CPNE4-211ENST00000514439 MTHFSDQ2M296 383 aaKnown RBP10.37□□□□□ -0.75
CPNE4-211ENST00000514439 KRT24Q2M2I5 525 aa10.37□□□□□ -0.75
CPNE4-211ENST00000514439 CRB1P82279 1406 aa10.37□□□□□ -0.75
CPNE4-211ENST00000514439 USP54Q70EL1 1684 aa10.36□□□□□ -0.75
CPNE4-211ENST00000514439 ABTB2Q8N961 1025 aa10.36□□□□□ -0.75
CPNE4-211ENST00000514439 RBM33Q96EV2 1170 aaKnown RBP10.36□□□□□ -0.75
CPNE4-211ENST00000514439 CHMP4BQ9H444 224 aaKnown RBP10.36□□□□□ -0.75
CPNE4-211ENST00000514439 PHF8Q9UPP1 1060 aa10.36□□□□□ -0.75
CPNE4-211ENST00000514439 KIF24Q5T7B8 1368 aa10.36□□□□□ -0.75
CPNE4-211ENST00000514439 HOXC9P31274 260 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms