RNA–Protein interactions for RNA: ENST00000498325.5

HMGXB4-208, Transcript of HMG-box containing 4, humanhuman

TSL 3

Gene HMGXB4, Length 867 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB4-208ENST00000498325 PRR7Q8TB68 274 aa8.74□□□□□ -1.01
HMGXB4-208ENST00000498325 FAM174AQ8TBP5 190 aa8.73□□□□□ -1.01
HMGXB4-208ENST00000498325 KLF16Q9BXK1 252 aaPredicted RBP8.73□□□□□ -1.01
HMGXB4-208ENST00000498325 C6orf118Q5T5N4 469 aa8.72□□□□□ -1.01
HMGXB4-208ENST00000498325 PPRC1Q5VV67 1664 aaKnown RBP8.72□□□□□ -1.01
HMGXB4-208ENST00000498325 CUX1P39880 1505 aa8.71□□□□□ -1.01
HMGXB4-208ENST00000498325 SPATA31D1Q6ZQQ2 1576 aa8.71□□□□□ -1.02
HMGXB4-208ENST00000498325 NDUFV2P19404 249 aa8.71□□□□□ -1.02
HMGXB4-208ENST00000498325 DESI1Q6ICB0 168 aa8.71□□□□□ -1.02
HMGXB4-208ENST00000498325 SPIRE2Q8WWL2 714 aa8.71□□□□□ -1.02
HMGXB4-208ENST00000498325 PPFIA3O75145 1194 aa8.7□□□□□ -1.02
HMGXB4-208ENST00000498325 ZIC2O95409 532 aaPredicted RBP8.7□□□□□ -1.02
HMGXB4-208ENST00000498325 CTHP32929 405 aa8.7□□□□□ -1.02
HMGXB4-208ENST00000498325 ARID5BQ14865 1188 aa8.7□□□□□ -1.02
HMGXB4-208ENST00000498325 ZFAND3Q9H8U3 227 aa8.7□□□□□ -1.02
HMGXB4-208ENST00000498325 ABCA5Q8WWZ7 1642 aa8.69□□□□□ -1.02
HMGXB4-208ENST00000498325 MOXD2PA6NHM9 499 aa8.69□□□□□ -1.02
HMGXB4-208ENST00000498325 SPDYE5A6NIY4 337 aa8.69□□□□□ -1.02
HMGXB4-208ENST00000498325 GSK3AP49840 483 aa8.69□□□□□ -1.02
HMGXB4-208ENST00000498325 MTMR2Q13614 643 aa8.69□□□□□ -1.02
HMGXB4-208ENST00000498325 ITPKCQ96DU7 683 aa8.69□□□□□ -1.02
HMGXB4-208ENST00000498325 CDK15Q96Q40 435 aa8.69□□□□□ -1.02
HMGXB4-208ENST00000498325 TOP2BQ02880 1626 aa8.69□□□□□ -1.02
HMGXB4-208ENST00000498325 UPP2O95045 317 aa8.68□□□□□ -1.02
HMGXB4-208ENST00000498325 SSTR3P32745 418 aaPredicted RBP8.68□□□□□ -1.02
HMGXB4-208ENST00000498325 PLCB2Q00722 1185 aa8.68□□□□□ -1.02
HMGXB4-208ENST00000498325 TMEM151AQ8N4L1 468 aa8.68□□□□□ -1.02
HMGXB4-208ENST00000498325 BMP2P12643 396 aa8.67□□□□□ -1.02
HMGXB4-208ENST00000498325 ADAMTS12P58397 1594 aa8.67□□□□□ -1.02
HMGXB4-208ENST00000498325 NR5A1Q13285 461 aa8.66□□□□□ -1.02
HMGXB4-208ENST00000498325 FOXJ1Q92949 421 aa8.66□□□□□ -1.02
HMGXB4-208ENST00000498325 ABCA10Q8WWZ4 1543 aa8.65□□□□□ -1.02
HMGXB4-208ENST00000498325 GDF11O95390 407 aa8.65□□□□□ -1.02
HMGXB4-208ENST00000498325 NR3C2P08235 984 aa8.65□□□□□ -1.02
HMGXB4-208ENST00000498325 RASSF7Q02833 373 aa8.65□□□□□ -1.02
HMGXB4-208ENST00000498325 LYPD8Q6UX82 237 aa8.65□□□□□ -1.02
HMGXB4-208ENST00000498325 LINC00528Q8N1L1 170 aa8.65□□□□□ -1.02
HMGXB4-208ENST00000498325 AGERQ15109 404 aa8.64□□□□□ -1.03
HMGXB4-208ENST00000498325 KDM2AQ9Y2K7 1162 aa8.64□□□□□ -1.03
HMGXB4-208ENST00000498325 GLI2P10070 1586 aa8.64□□□□□ -1.03
HMGXB4-208ENST00000498325 FHAD1B1AJZ9 1412 aa8.63□□□□□ -1.03
HMGXB4-208ENST00000498325 RNF225M0QZC1 329 aaPredicted RBP8.63□□□□□ -1.03
HMGXB4-208ENST00000498325 GRM5P41594 1212 aa8.63□□□□□ -1.03
HMGXB4-208ENST00000498325 PTPRMP28827 1452 aa8.63□□□□□ -1.03
HMGXB4-208ENST00000498325 SOS2Q07890 1332 aaPredicted RBP8.62□□□□□ -1.03
HMGXB4-208ENST00000498325 SPTLC1O15269 473 aa8.62□□□□□ -1.03
HMGXB4-208ENST00000498325 HSPA2P54652 639 aa8.62□□□□□ -1.03
HMGXB4-208ENST00000498325 MEIOBQ8N635 442 aa8.62□□□□□ -1.03
HMGXB4-208ENST00000498325 CNTNAP3BQ96NU0 1288 aa8.62□□□□□ -1.03
HMGXB4-208ENST00000498325 CNTNAP3Q9BZ76 1288 aa8.62□□□□□ -1.03
HMGXB4-208ENST00000498325 MAP10Q9P2G4 905 aa8.62□□□□□ -1.03
HMGXB4-208ENST00000498325 DNMT3LQ9UJW3 386 aa8.62□□□□□ -1.03
HMGXB4-208ENST00000498325 ASXL2Q76L83 1435 aa8.62□□□□□ -1.03
HMGXB4-208ENST00000498325 PCF11O94913 1555 aaKnown RBP8.61□□□□□ -1.03
HMGXB4-208ENST00000498325 KRT76Q01546 638 aa8.61□□□□□ -1.03
HMGXB4-208ENST00000498325 TTLL12Q14166 644 aaPredicted RBP8.61□□□□□ -1.03
HMGXB4-208ENST00000498325 ADAMTS8Q9UP79 889 aa8.61□□□□□ -1.03
HMGXB4-208ENST00000498325 C4orf48Q5BLP8 95 aa8.6□□□□□ -1.03
HMGXB4-208ENST00000498325 BPHLQ86WA6 291 aaPredicted RBP8.6□□□□□ -1.03
HMGXB4-208ENST00000498325 CFAP99D6REC4 459 aa8.59□□□□□ -1.03
HMGXB4-208ENST00000498325 F12P00748 615 aaPredicted RBP8.59□□□□□ -1.03
HMGXB4-208ENST00000498325 GPR161Q8N6U8 529 aaKnown RBP8.59□□□□□ -1.03
HMGXB4-208ENST00000498325 WRNQ14191 1432 aaPredicted RBP eCLIP8.59□□□□□ -1.03
HMGXB4-208ENST00000498325 GJA5P36382 358 aa8.58□□□□□ -1.04
HMGXB4-208ENST00000498325 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.58□□□□□ -1.042e-6■□□□□ 8.6
HMGXB4-208ENST00000498325 TSEN34Q9BSV6 310 aaKnown RBP8.58□□□□□ -1.04
HMGXB4-208ENST00000498325 PLB1Q6P1J6 1458 aa8.57□□□□□ -1.04
HMGXB4-208ENST00000498325 RSBN1LQ6PCB5 846 aaPredicted RBP8.57□□□□□ -1.04
HMGXB4-208ENST00000498325 BEGAINQ9BUH8 593 aa8.57□□□□□ -1.04
HMGXB4-208ENST00000498325 RUSC2Q8N2Y8 1516 aa8.57□□□□□ -1.04
HMGXB4-208ENST00000498325 KIF21BO75037 1637 aa8.57□□□□□ -1.04
HMGXB4-208ENST00000498325 MAP3K4Q9Y6R4 1608 aa8.57□□□□□ -1.04
HMGXB4-208ENST00000498325 TTBK1Q5TCY1 1321 aaPredicted RBP8.56□□□□□ -1.04
HMGXB4-208ENST00000498325 EPRSP07814 1512 aaKnown RBP8.56□□□□□ -1.04
HMGXB4-208ENST00000498325 ABCC2Q92887 1545 aa8.56□□□□□ -1.04
HMGXB4-208ENST00000498325 FSHRP23945 695 aa8.56□□□□□ -1.04
HMGXB4-208ENST00000498325 HAP1P54257 671 aaPredicted RBP8.56□□□□□ -1.04
HMGXB4-208ENST00000498325 DIXDC1Q155Q3 683 aa8.56□□□□□ -1.04
HMGXB4-208ENST00000498325 COL25A1Q9BXS0 654 aaPredicted RBP8.56□□□□□ -1.04
HMGXB4-208ENST00000498325 TBC1D2Q9BYX2 928 aa8.56□□□□□ -1.04
HMGXB4-208ENST00000498325 ZBTB3Q9H5J0 574 aa8.56□□□□□ -1.04
HMGXB4-208ENST00000498325 PCDHB15Q9Y5E8 787 aa8.56□□□□□ -1.04
HMGXB4-208ENST00000498325 TEX14Q8IWB6 1497 aa8.56□□□□□ -1.04
HMGXB4-208ENST00000498325 TTLL8A6PVC2 850 aa8.55□□□□□ -1.04
HMGXB4-208ENST00000498325 PTSQ03393 145 aa8.55□□□□□ -1.04
HMGXB4-208ENST00000498325 GIGYF2Q6Y7W6 1299 aaKnown RBP8.55□□□□□ -1.04
HMGXB4-208ENST00000498325 SVOPQ8N4V2 548 aa8.55□□□□□ -1.04
HMGXB4-208ENST00000498325 ADAMTSL3P82987 1691 aa8.54□□□□□ -1.04
HMGXB4-208ENST00000498325 HRCP23327 699 aa8.54□□□□□ -1.04
HMGXB4-208ENST00000498325 EMILIN1Q9Y6C2 1016 aa8.54□□□□□ -1.04
HMGXB4-208ENST00000498325 PTPRGP23470 1445 aa8.54□□□□□ -1.04
HMGXB4-208ENST00000498325 FIGNL2A6NMB9 653 aa8.53□□□□□ -1.04
HMGXB4-208ENST00000498325 ZNF385CQ66K41 422 aaPredicted RBP8.53□□□□□ -1.04
HMGXB4-208ENST00000498325 VASH1Q7L8A9 365 aaPredicted RBP8.53□□□□□ -1.04
HMGXB4-208ENST00000498325 NANOS1Q8WY41 292 aaKnown RBP8.53□□□□□ -1.04
HMGXB4-208ENST00000498325 C1QTNF2Q9BXJ5 285 aa8.53□□□□□ -1.04
HMGXB4-208ENST00000498325 IRS1P35568 1242 aa8.52□□□□□ -1.05
HMGXB4-208ENST00000498325 AMHR2Q16671 573 aa8.52□□□□□ -1.05
HMGXB4-208ENST00000498325 GPAT2Q6NUI2 795 aa8.52□□□□□ -1.05
HMGXB4-208ENST00000498325 CCDC116Q8IYX3 515 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 134.9 ms