RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 DDX54Q8TDD1 881 aaKnown RBP13.26□□□□□ -0.29
MSH5-SAPCD1-207ENST00000493662 KIF16BQ96L93 1317 aa13.26□□□□□ -0.29
MSH5-SAPCD1-207ENST00000493662 RAPGEF4Q8WZA2 1011 aa13.25□□□□□ -0.29
MSH5-SAPCD1-207ENST00000493662 NKTRP30414 1462 aaKnown RBP13.25□□□□□ -0.29
MSH5-SAPCD1-207ENST00000493662 PIP4K2AP48426 406 aaPredicted RBP13.25□□□□□ -0.29
MSH5-SAPCD1-207ENST00000493662 CLTCL1P53675 1640 aa13.25□□□□□ -0.29
MSH5-SAPCD1-207ENST00000493662 ESPNB1AK53 854 aa13.24□□□□□ -0.29
MSH5-SAPCD1-207ENST00000493662 SMARCA5O60264 1052 aaPredicted RBP13.24□□□□□ -0.29
MSH5-SAPCD1-207ENST00000493662 KCNJ4P48050 445 aa13.24□□□□□ -0.29
MSH5-SAPCD1-207ENST00000493662 MYL6BP14649 208 aa13.24□□□□□ -0.29
MSH5-SAPCD1-207ENST00000493662 HDGFL1Q5TGJ6 251 aa13.24□□□□□ -0.29
MSH5-SAPCD1-207ENST00000493662 MAP7D2Q96T17 732 aa13.23□□□□□ -0.29
MSH5-SAPCD1-207ENST00000493662 DDX11L8A8MPP1 907 aa13.23□□□□□ -0.29
MSH5-SAPCD1-207ENST00000493662 TSHZ3Q63HK5 1081 aa13.23□□□□□ -0.29
MSH5-SAPCD1-207ENST00000493662 NAP1L2Q9ULW6 460 aaPredicted RBP13.23□□□□□ -0.29
MSH5-SAPCD1-207ENST00000493662 CROCC2H7BZ55 1655 aa13.23□□□□□ -0.29
MSH5-SAPCD1-207ENST00000493662 R3HCC1Q9Y3T6 440 aaKnown RBP13.22□□□□□ -0.29
MSH5-SAPCD1-207ENST00000493662 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.22□□□□□ -0.29
MSH5-SAPCD1-207ENST00000493662 API5Q9BZZ5 524 aaKnown RBP13.22□□□□□ -0.29
MSH5-SAPCD1-207ENST00000493662 C9orf78Q9NZ63 289 aaPredicted RBP13.22□□□□□ -0.29
MSH5-SAPCD1-207ENST00000493662 MAP4K4O95819 1239 aaPredicted RBP13.22□□□□□ -0.29
MSH5-SAPCD1-207ENST00000493662 PLCB2Q00722 1185 aa13.22□□□□□ -0.29
MSH5-SAPCD1-207ENST00000493662 CHMP4BQ9H444 224 aaKnown RBP13.22□□□□□ -0.29
MSH5-SAPCD1-207ENST00000493662 EXOC6BQ9Y2D4 811 aa13.22□□□□□ -0.29
MSH5-SAPCD1-207ENST00000493662 EIF2AK4Q9P2K8 1649 aaKnown RBP13.22□□□□□ -0.29
MSH5-SAPCD1-207ENST00000493662 MAP3K19Q56UN5 1328 aa13.22□□□□□ -0.29
MSH5-SAPCD1-207ENST00000493662 CASC1Q6TDU7 716 aa13.22□□□□□ -0.29
MSH5-SAPCD1-207ENST00000493662 KIAA1211Q6ZU35 1233 aa13.22□□□□□ -0.29
MSH5-SAPCD1-207ENST00000493662 JARID2Q92833 1246 aaPredicted RBP13.22□□□□□ -0.29
MSH5-SAPCD1-207ENST00000493662 TRIM35Q9UPQ4 493 aa13.22□□□□□ -0.29
MSH5-SAPCD1-207ENST00000493662 NEO1Q92859 1461 aa13.21□□□□□ -0.29
MSH5-SAPCD1-207ENST00000493662 TRPM2O94759 1503 aa13.21□□□□□ -0.29
MSH5-SAPCD1-207ENST00000493662 MLH3Q9UHC1 1453 aa13.21□□□□□ -0.29
MSH5-SAPCD1-207ENST00000493662 FAM177BA6PVY3 158 aa13.21□□□□□ -0.29
MSH5-SAPCD1-207ENST00000493662 PDCL3Q9H2J4 239 aa13.21□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 IL1RAPL2Q9NP60 686 aa13.21□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 NUTM2BA6NNL0 878 aaPredicted RBP13.2□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 NUTM2EB1AL46 878 aaPredicted RBP13.2□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 MTHFSDQ2M296 383 aaKnown RBP13.2□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 NUTM2AQ8IVF1 878 aaPredicted RBP13.2□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 POLR3AO14802 1390 aaPredicted RBP13.2□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 PTCD1O75127 700 aaKnown RBP13.2□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 PRR36Q9H6K5 1346 aa13.19□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 TRAK2O60296 914 aa13.19□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 EYA1Q99502 592 aa13.19□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 TTC5Q8N0Z6 440 aa13.19□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 GAS2L2Q8NHY3 880 aa13.19□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 PRDM11Q9NQV5 511 aa13.19□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 PPP6R1Q9UPN7 881 aa13.19□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 NPHP1O15259 732 aa13.19□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 PIP4K2BP78356 416 aa13.19□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 E9PCH4 1651 aa13.18□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 PDE4CQ08493 712 aa13.18□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 CHAF1AQ13111 956 aaPredicted RBP13.18□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 TOM1L2Q6ZVM7 507 aa13.18□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 CCDC85AQ96PX6 553 aaPredicted RBP13.18□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 HMMRO75330 724 aa13.18□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 SIL1Q9H173 461 aa13.18□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 RRAGDQ9NQL2 400 aaPredicted RBP13.18□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 CHMP5Q9NZZ3 219 aa13.18□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 PIK3C2GO75747 1445 aa13.18□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 SEC24BO95487 1268 aa13.17□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 PTMSP20962 102 aa13.17□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 SLC39A6Q13433 755 aa13.17□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 KRT28Q7Z3Y7 464 aa13.17□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 ROBO2Q9HCK4 1378 aa13.17□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 ABCC3O15438 1527 aa13.17□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 IQGAP3Q86VI3 1631 aa13.17□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 TMEM2Q9UHN6 1383 aa13.16□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 GNAT3A8MTJ3 354 aa13.16□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 SURF6O75683 361 aaKnown RBP13.16□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 CLCN1P35523 988 aa13.16□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 KIAA2012Q0VF49 1180 aa13.16□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 SHROOM2Q13796 1616 aa13.16□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 BTBD11A6QL63 1104 aa13.16□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 PLXNC1O60486 1568 aa13.16□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 HECW2Q9P2P5 1572 aa13.16□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 RIC3Q7Z5B4 369 aa13.15□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 C22orf23Q9BZE7 217 aa13.15□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 IL13P35225 146 aa13.15□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 CFAP44Q96MT7 982 aa13.15□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 EFCAB6Q5THR3 1501 aa13.15□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 UBTFL1P0CB47 393 aaPredicted RBP13.15□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 DDX49Q9Y6V7 483 aaKnown RBP13.15□□□□□ -0.3
MSH5-SAPCD1-207ENST00000493662 C16orf71Q8IYS4 520 aaPredicted RBP13.14□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 MEIS3Q99687 375 aa13.14□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 MTERF4Q7Z6M4 381 aaKnown RBP13.14□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 GRPEL1Q9HAV7 217 aa13.14□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 CEP152O94986 1710 aa13.14□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 FGD1P98174 961 aa13.14□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 G2E3Q7L622 706 aa13.14□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 ADAMTS2O95450 1211 aa13.13□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 ANO2Q9NQ90 1003 aa13.13□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 TRPM1Q7Z4N2 1603 aa13.13□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 VAMP4O75379 141 aa13.13□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 PLEKHO1Q53GL0 409 aaPredicted RBP13.13□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 CCDC30Q5VVM6 783 aa13.13□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 RBM42Q9BTD8 480 aaKnown RBP13.13□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 UNC13BO14795 1591 aa13.13□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 SKOR2Q2VWA4 1001 aaPredicted RBP13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms