RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 DCAF8Q5TAQ9 597 aa14.06□□□□□ -0.16
SKA1-204ENST00000488454 COG3Q96JB2 828 aa14.06□□□□□ -0.16
SKA1-204ENST00000488454 NUTM2BA6NNL0 878 aaPredicted RBP14.05□□□□□ -0.16
SKA1-204ENST00000488454 NUTM2EB1AL46 878 aaPredicted RBP14.05□□□□□ -0.16
SKA1-204ENST00000488454 FYB1O15117 783 aa14.05□□□□□ -0.16
SKA1-204ENST00000488454 NUTM2AQ8IVF1 878 aaPredicted RBP14.05□□□□□ -0.16
SKA1-204ENST00000488454 PER1O15534 1290 aaPredicted RBP14.04□□□□□ -0.16
SKA1-204ENST00000488454 GGNBP2Q9H3C7 697 aa14.04□□□□□ -0.16
SKA1-204ENST00000488454 SPATA31A6Q5VVP1 1343 aa14.04□□□□□ -0.16
SKA1-204ENST00000488454 PNPLA6Q8IY17 1366 aa14.04□□□□□ -0.16
SKA1-204ENST00000488454 CNGB1Q14028 1251 aaPredicted RBP14.03□□□□□ -0.16
SKA1-204ENST00000488454 KCNH5Q8NCM2 988 aa14.03□□□□□ -0.16
SKA1-204ENST00000488454 CABLES1Q8TDN4 633 aa14.03□□□□□ -0.16
SKA1-204ENST00000488454 COL16A1Q07092 1604 aaPredicted RBP14.03□□□□□ -0.16
SKA1-204ENST00000488454 MYOM1P52179 1685 aa14.02□□□□□ -0.16
SKA1-204ENST00000488454 AKAP12Q02952 1782 aa14.01□□□□□ -0.17
SKA1-204ENST00000488454 USP31Q70CQ4 1352 aa14.01□□□□□ -0.17
SKA1-204ENST00000488454 SOX12O15370 315 aa14.01□□□□□ -0.17
SKA1-204ENST00000488454 GCP02774 474 aa14.01□□□□□ -0.17
SKA1-204ENST00000488454 CC2D1BQ5T0F9 858 aaKnown RBP14.01□□□□□ -0.17
SKA1-204ENST00000488454 MORC1Q86VD1 984 aa14.01□□□□□ -0.17
SKA1-204ENST00000488454 KIF12Q96FN5 646 aa14.01□□□□□ -0.17
SKA1-204ENST00000488454 ADAMTS2O95450 1211 aa14□□□□□ -0.17
SKA1-204ENST00000488454 GSE1Q14687 1217 aa14□□□□□ -0.17
SKA1-204ENST00000488454 AMER1Q5JTC6 1135 aaPredicted RBP14□□□□□ -0.17
SKA1-204ENST00000488454 MEX3CQ5U5Q3 659 aaKnown RBP14□□□□□ -0.17
SKA1-204ENST00000488454 MON2Q7Z3U7 1717 aa14□□□□□ -0.17
SKA1-204ENST00000488454 NSD2O96028 1365 aa13.99□□□□□ -0.17
SKA1-204ENST00000488454 TRPM3Q9HCF6 1732 aaPredicted RBP13.99□□□□□ -0.17
SKA1-204ENST00000488454 GALR2O43603 387 aaPredicted RBP13.99□□□□□ -0.17
SKA1-204ENST00000488454 USP19O94966 1318 aa13.98□□□□□ -0.17
SKA1-204ENST00000488454 ZBTB7CA1YPR0 619 aa13.98□□□□□ -0.17
SKA1-204ENST00000488454 ZC3H6P61129 1189 aaKnown RBP13.98□□□□□ -0.17
SKA1-204ENST00000488454 TNNT2P45379 298 aaPredicted RBP13.97□□□□□ -0.17
SKA1-204ENST00000488454 NPC1L1Q9UHC9 1359 aa13.96□□□□□ -0.17
SKA1-204ENST00000488454 ALS2Q96Q42 1657 aa13.96□□□□□ -0.17
SKA1-204ENST00000488454 MS4A3Q96HJ5 214 aa13.96□□□□□ -0.17
SKA1-204ENST00000488454 PRDM11Q9NQV5 511 aa13.96□□□□□ -0.17
SKA1-204ENST00000488454 MAP3K13O43283 966 aa13.95□□□□□ -0.18
SKA1-204ENST00000488454 NGLY1Q96IV0 654 aa13.95□□□□□ -0.18
SKA1-204ENST00000488454 CIZ1Q9ULV3 898 aaPredicted RBP13.95□□□□□ -0.18
SKA1-204ENST00000488454 OVOS2A0A0J9YW53 1432 aa13.95□□□□□ -0.18
SKA1-204ENST00000488454 OVOS2Q6IE36 1432 aa13.95□□□□□ -0.18
SKA1-204ENST00000488454 NRKQ7Z2Y5 1582 aa13.95□□□□□ -0.18
SKA1-204ENST00000488454 AMPHP49418 695 aa13.94□□□□□ -0.18
SKA1-204ENST00000488454 C8orf37Q96NL8 207 aa13.94□□□□□ -0.18
SKA1-204ENST00000488454 PIK3C2AO00443 1686 aa13.94□□□□□ -0.18
SKA1-204ENST00000488454 SHPRHQ149N8 1683 aa13.94□□□□□ -0.18
SKA1-204ENST00000488454 FAM83GA6ND36 823 aa13.93□□□□□ -0.18
SKA1-204ENST00000488454 PPM1GO15355 546 aaPredicted RBP13.93□□□□□ -0.18
SKA1-204ENST00000488454 ARHGEF25Q86VW2 580 aa13.93□□□□□ -0.18
SKA1-204ENST00000488454 KIAA0232Q92628 1395 aa13.93□□□□□ -0.18
SKA1-204ENST00000488454 COL22A1Q8NFW1 1626 aaPredicted RBP13.93□□□□□ -0.18
SKA1-204ENST00000488454 MED1Q15648 1581 aaPredicted RBP13.92□□□□□ -0.18
SKA1-204ENST00000488454 ANP32CO43423 234 aa13.92□□□□□ -0.18
SKA1-204ENST00000488454 PYGBP11216 843 aa13.92□□□□□ -0.18
SKA1-204ENST00000488454 FBLN1P23142 703 aa13.92□□□□□ -0.18
SKA1-204ENST00000488454 EVA1CP58658 441 aa13.92□□□□□ -0.18
SKA1-204ENST00000488454 RRS1Q15050 365 aaKnown RBP13.92□□□□□ -0.18
SKA1-204ENST00000488454 RALBP1Q15311 655 aa13.92□□□□□ -0.18
SKA1-204ENST00000488454 CHRNA2Q15822 529 aa13.92□□□□□ -0.18
SKA1-204ENST00000488454 CPDO75976 1380 aa13.91□□□□□ -0.18
SKA1-204ENST00000488454 MAP3K19Q56UN5 1328 aa13.9□□□□□ -0.18
SKA1-204ENST00000488454 SLIT3O75094 1523 aa13.9□□□□□ -0.18
SKA1-204ENST00000488454 AATKQ6ZMQ8 1374 aa13.9□□□□□ -0.18
SKA1-204ENST00000488454 IP6K1Q92551 441 aa13.89□□□□□ -0.19
SKA1-204ENST00000488454 BTG4Q9NY30 223 aa13.89□□□□□ -0.19
SKA1-204ENST00000488454 POLKQ9UBT6 870 aa13.89□□□□□ -0.19
SKA1-204ENST00000488454 KIF20BQ96Q89 1820 aa13.88□□□□□ -0.19
SKA1-204ENST00000488454 FNBP4Q8N3X1 1017 aaPredicted RBP13.88□□□□□ -0.19
SKA1-204ENST00000488454 USP21Q9UK80 565 aa13.88□□□□□ -0.19
SKA1-204ENST00000488454 PCDHB13Q9Y5F0 798 aa13.88□□□□□ -0.19
SKA1-204ENST00000488454 EMILIN1Q9Y6C2 1016 aa13.88□□□□□ -0.19
SKA1-204ENST00000488454 LRP6O75581 1613 aa13.87□□□□□ -0.19
SKA1-204ENST00000488454 CSB-PGBD3P0DP91 1061 aa13.87□□□□□ -0.19
SKA1-204ENST00000488454 HOXC9P31274 260 aa13.87□□□□□ -0.19
SKA1-204ENST00000488454 MTHFSP49914 203 aa13.87□□□□□ -0.19
SKA1-204ENST00000488454 DIEXFQ68CQ4 756 aaKnown RBP13.87□□□□□ -0.19
SKA1-204ENST00000488454 SGIP1Q9BQI5 828 aa13.87□□□□□ -0.19
SKA1-204ENST00000488454 PRKRIP1Q9H875 184 aaPredicted RBP13.87□□□□□ -0.19
SKA1-204ENST00000488454 STRN4Q9NRL3 753 aa13.87□□□□□ -0.19
SKA1-204ENST00000488454 AFF2P51816 1311 aa13.87□□□□□ -0.19
SKA1-204ENST00000488454 PPP2R1AP30153 589 aa13.86□□□□□ -0.19
SKA1-204ENST00000488454 ZNF772Q68DY9 489 aaPredicted RBP13.86□□□□□ -0.19
SKA1-204ENST00000488454 UNC5CLQ8IV45 518 aa13.86□□□□□ -0.19
SKA1-204ENST00000488454 LTV1Q96GA3 475 aaPredicted RBP13.86□□□□□ -0.19
SKA1-204ENST00000488454 CFAP53Q96M91 514 aa13.86□□□□□ -0.19
SKA1-204ENST00000488454 AXIN2Q9Y2T1 843 aa13.86□□□□□ -0.19
SKA1-204ENST00000488454 PHRF1Q9P1Y6 1649 aaKnown RBP13.86□□□□□ -0.19
SKA1-204ENST00000488454 NFAT5O94916 1531 aa13.85□□□□□ -0.19
SKA1-204ENST00000488454 KIF24Q5T7B8 1368 aa13.85□□□□□ -0.19
SKA1-204ENST00000488454 PARD3Q8TEW0 1356 aa13.85□□□□□ -0.19
SKA1-204ENST00000488454 CHRM1P11229 460 aaPredicted RBP13.85□□□□□ -0.19
SKA1-204ENST00000488454 CCDC9Q9Y3X0 531 aaKnown RBP13.85□□□□□ -0.19
SKA1-204ENST00000488454 USP54Q70EL1 1684 aa13.85□□□□□ -0.19
SKA1-204ENST00000488454 RTL1A6NKG5 1358 aa13.84□□□□□ -0.19
SKA1-204ENST00000488454 FLT4P35916 1363 aa13.84□□□□□ -0.19
SKA1-204ENST00000488454 POTEIP0CG38 1075 aa13.84□□□□□ -0.19
SKA1-204ENST00000488454 HSP90AB2PQ58FF8 381 aa13.84□□□□□ -0.19
SKA1-204ENST00000488454 ANKRD24Q8TF21 1146 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms