RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 HMGN5P82970 282 aaKnown RBP16.33■□□□□ 0.2
USP42-206ENST00000479544 ZFYVE16Q7Z3T8 1539 aa16.33■□□□□ 0.2
USP42-206ENST00000479544 SF3A1Q15459 793 aaKnown RBP16.32■□□□□ 0.2
USP42-206ENST00000479544 CREBRFQ8IUR6 639 aa16.32■□□□□ 0.2
USP42-206ENST00000479544 KIF3AQ9Y496 699 aa16.32■□□□□ 0.2
USP42-206ENST00000479544 NSD3Q9BZ95 1437 aa16.32■□□□□ 0.2
USP42-206ENST00000479544 ERC2O15083 957 aa16.31■□□□□ 0.2
USP42-206ENST00000479544 TPD52L1Q16890 204 aaPredicted RBP16.31■□□□□ 0.2
USP42-206ENST00000479544 GAS2L3Q86XJ1 694 aa16.31■□□□□ 0.2
USP42-206ENST00000479544 COG3Q96JB2 828 aa16.31■□□□□ 0.2
USP42-206ENST00000479544 IL1RAPL2Q9NP60 686 aa16.31■□□□□ 0.2
USP42-206ENST00000479544 KLHL40Q2TBA0 621 aa16.31■□□□□ 0.2
USP42-206ENST00000479544 FERMT3Q86UX7 667 aa16.31■□□□□ 0.2
USP42-206ENST00000479544 HOMER1Q86YM7 354 aa16.31■□□□□ 0.2
USP42-206ENST00000479544 FMNL2Q96PY5 1086 aa16.31■□□□□ 0.2
USP42-206ENST00000479544 ATP10AO60312 1499 aa16.31■□□□□ 0.2
USP42-206ENST00000479544 NINLQ9Y2I6 1382 aa16.3■□□□□ 0.2
USP42-206ENST00000479544 AMPHP49418 695 aa16.3■□□□□ 0.2
USP42-206ENST00000479544 FAM184AQ8NB25 1140 aa16.3■□□□□ 0.2
USP42-206ENST00000479544 CWC22Q9HCG8 908 aaKnown RBP16.3■□□□□ 0.2
USP42-206ENST00000479544 GPRASP1Q5JY77 1395 aa16.3■□□□□ 0.2
USP42-206ENST00000479544 DTNBO60941 627 aa16.3■□□□□ 0.2
USP42-206ENST00000479544 SLC4A2P04920 1241 aa16.3■□□□□ 0.2
USP42-206ENST00000479544 TSC1Q92574 1164 aa16.3■□□□□ 0.2
USP42-206ENST00000479544 TRERF1Q96PN7 1200 aa16.3■□□□□ 0.2
USP42-206ENST00000479544 MIS18AQ9NYP9 233 aa16.3■□□□□ 0.2
USP42-206ENST00000479544 CCDC141Q6ZP82 1450 aa16.3■□□□□ 0.2
USP42-206ENST00000479544 GORABQ5T7V8 394 aa16.3■□□□□ 0.2
USP42-206ENST00000479544 C16orf71Q8IYS4 520 aaPredicted RBP16.29■□□□□ 0.2
USP42-206ENST00000479544 PDCL2Q8N4E4 241 aa16.29■□□□□ 0.2
USP42-206ENST00000479544 ERICH4A6NGS2 130 aa16.29■□□□□ 0.2
USP42-206ENST00000479544 TTC12Q9H892 705 aaPredicted RBP16.29■□□□□ 0.2
USP42-206ENST00000479544 TCOF1Q13428 1488 aaKnown RBP16.29■□□□□ 0.2
USP42-206ENST00000479544 SURF6O75683 361 aaKnown RBP16.29■□□□□ 0.2
USP42-206ENST00000479544 ZGPATQ8N5A5 531 aaKnown RBP16.29■□□□□ 0.2
USP42-206ENST00000479544 CHAMP1Q96JM3 812 aa16.29■□□□□ 0.2
USP42-206ENST00000479544 TSPYL4Q9UJ04 414 aa16.29■□□□□ 0.2
USP42-206ENST00000479544 SASS6Q6UVJ0 657 aa16.28■□□□□ 0.2
USP42-206ENST00000479544 HTATSF1O43719 755 aaKnown RBP16.28■□□□□ 0.2
USP42-206ENST00000479544 HDGFP51858 240 aaKnown RBP16.28■□□□□ 0.2
USP42-206ENST00000479544 CAMK4Q16566 473 aa16.28■□□□□ 0.2
USP42-206ENST00000479544 TULP1O00294 542 aaPredicted RBP16.28■□□□□ 0.2
USP42-206ENST00000479544 ZKSCAN1P17029 563 aaPredicted RBP16.28■□□□□ 0.2
USP42-206ENST00000479544 PLEKHH2Q8IVE3 1493 aa16.28■□□□□ 0.2
USP42-206ENST00000479544 ZNF518AQ6AHZ1 1483 aa16.28■□□□□ 0.2
USP42-206ENST00000479544 CABP1Q9NZU7 370 aa16.27■□□□□ 0.2
USP42-206ENST00000479544 ZNF330Q9Y3S2 320 aaPredicted RBP16.27■□□□□ 0.2
USP42-206ENST00000479544 PPP4R3BQ5MIZ7 849 aa16.27■□□□□ 0.19
USP42-206ENST00000479544 ABCA9Q8IUA7 1624 aa16.27■□□□□ 0.19
USP42-206ENST00000479544 ADGRF5Q8IZF2 1346 aa16.26■□□□□ 0.19
USP42-206ENST00000479544 HCLS1P14317 486 aaPredicted RBP16.26■□□□□ 0.19
USP42-206ENST00000479544 BMP2KLQ5H9B9 411 aa16.26■□□□□ 0.19
USP42-206ENST00000479544 STK3Q13188 491 aa16.25■□□□□ 0.19
USP42-206ENST00000479544 FILIP1Q7Z7B0 1213 aa16.25■□□□□ 0.19
USP42-206ENST00000479544 CGNQ9P2M7 1197 aaKnown RBP16.25■□□□□ 0.19
USP42-206ENST00000479544 SPATA31E1Q6ZUB1 1445 aa16.25■□□□□ 0.19
USP42-206ENST00000479544 OFD1O75665 1012 aa16.25■□□□□ 0.19
USP42-206ENST00000479544 RAB3GAP1Q15042 981 aa16.25■□□□□ 0.19
USP42-206ENST00000479544 RRS1Q15050 365 aaKnown RBP16.25■□□□□ 0.19
USP42-206ENST00000479544 C17orf53Q8N3J3 647 aaPredicted RBP16.24■□□□□ 0.19
USP42-206ENST00000479544 GPATCH3Q96I76 525 aa16.24■□□□□ 0.19
USP42-206ENST00000479544 PRAM1Q96QH2 718 aa16.24■□□□□ 0.19
USP42-206ENST00000479544 CARD14Q9BXL6 1004 aa16.24■□□□□ 0.19
USP42-206ENST00000479544 RBSNQ9H1K0 784 aa16.24■□□□□ 0.19
USP42-206ENST00000479544 RALGAPBQ86X10 1494 aa16.24■□□□□ 0.19
USP42-206ENST00000479544 F6X3S4 739 aa16.24■□□□□ 0.19
USP42-206ENST00000479544 KDM4AO75164 1064 aa16.24■□□□□ 0.19
USP42-206ENST00000479544 SULT6B1Q6IMI4 303 aa16.23■□□□□ 0.19
USP42-206ENST00000479544 NGDNQ8NEJ9 315 aaKnown RBP16.23■□□□□ 0.19
USP42-206ENST00000479544 C16orf45Q96MC5 204 aaPredicted RBP16.23■□□□□ 0.19
USP42-206ENST00000479544 PZPP20742 1482 aa16.23■□□□□ 0.19
USP42-206ENST00000479544 KIF14Q15058 1648 aa16.23■□□□□ 0.19
USP42-206ENST00000479544 NUCB1Q02818 461 aa16.22■□□□□ 0.19
USP42-206ENST00000479544 UBAP1LF5GYI3 381 aa16.22■□□□□ 0.19
USP42-206ENST00000479544 ADCY5O95622 1261 aa16.22■□□□□ 0.19
USP42-206ENST00000479544 C9orf78Q9NZ63 289 aaPredicted RBP16.22■□□□□ 0.19
USP42-206ENST00000479544 WDR33Q9C0J8 1336 aaKnown RBP16.22■□□□□ 0.19
USP42-206ENST00000479544 IFIT2P09913 472 aaKnown RBP16.22■□□□□ 0.19
USP42-206ENST00000479544 SKIDA1Q1XH10 827 aa16.22■□□□□ 0.19
USP42-206ENST00000479544 CCDC112Q8NEF3 446 aa16.22■□□□□ 0.19
USP42-206ENST00000479544 ZKSCAN5Q9Y2L8 839 aa16.22■□□□□ 0.19
USP42-206ENST00000479544 PPRC1Q5VV67 1664 aaKnown RBP16.21■□□□□ 0.19
USP42-206ENST00000479544 SAMD9Q5K651 1589 aa16.21■□□□□ 0.19
USP42-206ENST00000479544 YEATS2Q9ULM3 1422 aa16.21■□□□□ 0.19
USP42-206ENST00000479544 CT47B1P0C2W7 299 aaPredicted RBP16.21■□□□□ 0.19
USP42-206ENST00000479544 NUTM2GQ5VZR2 741 aa16.21■□□□□ 0.19
USP42-206ENST00000479544 PHF23Q9BUL5 403 aaPredicted RBP16.21■□□□□ 0.19
USP42-206ENST00000479544 CWC27Q6UX04 472 aaKnown RBP16.21■□□□□ 0.18
USP42-206ENST00000479544 NUTM1Q86Y26 1132 aa16.21■□□□□ 0.18
USP42-206ENST00000479544 CKAP2LQ8IYA6 745 aa16.21■□□□□ 0.18
USP42-206ENST00000479544 FAM83GA6ND36 823 aa16.2■□□□□ 0.18
USP42-206ENST00000479544 UBTFL1P0CB47 393 aaPredicted RBP16.2■□□□□ 0.18
USP42-206ENST00000479544 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.2■□□□□ 0.18
USP42-206ENST00000479544 SMC5Q8IY18 1101 aa16.2■□□□□ 0.18
USP42-206ENST00000479544 SDF4Q9BRK5 362 aa16.2■□□□□ 0.18
USP42-206ENST00000479544 HDAC1Q13547 482 aaPredicted RBP16.2■□□□□ 0.18
USP42-206ENST00000479544 FAM177A1Q8N128 213 aaPredicted RBP16.2■□□□□ 0.18
USP42-206ENST00000479544 TPM4P67936 248 aa16.19■□□□□ 0.18
USP42-206ENST00000479544 GIMAP6Q6P9H5 292 aa16.19■□□□□ 0.18
USP42-206ENST00000479544 CCDC192P0DO97 292 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms