RNA–Protein interactions for RNA: ENST00000470588.1

SMARCD3-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 1,755 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-206ENST00000470588 MSH6P52701 1360 aa21.89■■□□□ 1.1
SMARCD3-206ENST00000470588 LRRC7Q96NW7 1537 aa21.89■■□□□ 1.09
SMARCD3-206ENST00000470588 C1orf167Q5SNV9 1468 aa21.89■■□□□ 1.09
SMARCD3-206ENST00000470588 PAK3O75914 559 aaPredicted RBP21.89■■□□□ 1.09
SMARCD3-206ENST00000470588 NFE2L2Q16236 605 aa21.88■■□□□ 1.09
SMARCD3-206ENST00000470588 TCERG1O14776 1098 aaKnown RBP21.87■■□□□ 1.09
SMARCD3-206ENST00000470588 CADPS2Q86UW7 1296 aa21.87■■□□□ 1.09
SMARCD3-206ENST00000470588 FANCIQ9NVI1 1328 aa21.86■■□□□ 1.09
SMARCD3-206ENST00000470588 HMOX1P09601 288 aa21.86■■□□□ 1.09
SMARCD3-206ENST00000470588 CANXP27824 592 aaKnown RBP21.86■■□□□ 1.09
SMARCD3-206ENST00000470588 NLRP6P59044 892 aa21.86■■□□□ 1.09
SMARCD3-206ENST00000470588 ABTB2Q8N961 1025 aa21.86■■□□□ 1.09
SMARCD3-206ENST00000470588 CALD1Q05682 793 aaKnown RBP21.85■■□□□ 1.09
SMARCD3-206ENST00000470588 MST1RQ04912 1400 aa21.85■■□□□ 1.09
SMARCD3-206ENST00000470588 XIRP1Q702N8 1843 aaKnown RBP21.84■■□□□ 1.09
SMARCD3-206ENST00000470588 AAMPQ13685 434 aa21.84■■□□□ 1.09
SMARCD3-206ENST00000470588 CENPQQ7L2Z9 268 aaPredicted RBP21.84■■□□□ 1.09
SMARCD3-206ENST00000470588 PHACTR3Q96KR7 559 aa21.84■■□□□ 1.09
SMARCD3-206ENST00000470588 ORAI2Q96SN7 254 aa21.84■■□□□ 1.09
SMARCD3-206ENST00000470588 KDM2BQ8NHM5 1336 aa21.84■■□□□ 1.09
SMARCD3-206ENST00000470588 EXOSC9Q06265 439 aaKnown RBP21.83■■□□□ 1.09
SMARCD3-206ENST00000470588 MS4A1P11836 297 aa21.82■■□□□ 1.08
SMARCD3-206ENST00000470588 TSR2Q969E8 191 aaKnown RBP21.82■■□□□ 1.08
SMARCD3-206ENST00000470588 MARF1Q9Y4F3 1742 aaKnown RBP21.82■■□□□ 1.08
SMARCD3-206ENST00000470588 FRAT1Q92837 279 aaPredicted RBP21.82■■□□□ 1.08
SMARCD3-206ENST00000470588 LMOD3Q0VAK6 560 aa21.81■■□□□ 1.08
SMARCD3-206ENST00000470588 EIF4A2Q14240 407 aaKnown RBP21.81■■□□□ 1.08
SMARCD3-206ENST00000470588 SOX12O15370 315 aa21.8■■□□□ 1.08
SMARCD3-206ENST00000470588 ZNF335Q9H4Z2 1342 aaPredicted RBP21.8■■□□□ 1.08
SMARCD3-206ENST00000470588 SBNO1A3KN83 1393 aa21.79■■□□□ 1.08
SMARCD3-206ENST00000470588 FOXO3O43524 673 aa21.79■■□□□ 1.08
SMARCD3-206ENST00000470588 PEAK1Q9H792 1746 aa21.78■■□□□ 1.08
SMARCD3-206ENST00000470588 TRPM3Q9HCF6 1732 aaPredicted RBP21.78■■□□□ 1.08
SMARCD3-206ENST00000470588 FLT4P35916 1363 aa21.78■■□□□ 1.08
SMARCD3-206ENST00000470588 PANK1Q8TE04 598 aa21.78■■□□□ 1.08
SMARCD3-206ENST00000470588 KIF24Q5T7B8 1368 aa21.77■■□□□ 1.08
SMARCD3-206ENST00000470588 NUTM2GQ5VZR2 741 aa21.77■■□□□ 1.08
SMARCD3-206ENST00000470588 AMPHP49418 695 aa21.76■■□□□ 1.07
SMARCD3-206ENST00000470588 KRT28Q7Z3Y7 464 aa21.76■■□□□ 1.07
SMARCD3-206ENST00000470588 COG6Q9Y2V7 657 aa21.76■■□□□ 1.07
SMARCD3-206ENST00000470588 MAP3K19Q56UN5 1328 aa21.76■■□□□ 1.07
SMARCD3-206ENST00000470588 ZKSCAN2Q63HK3 967 aa21.76■■□□□ 1.07
SMARCD3-206ENST00000470588 ZNF428Q96B54 188 aa21.76■■□□□ 1.07
SMARCD3-206ENST00000470588 GNAI1P63096 354 aa21.75■■□□□ 1.07
SMARCD3-206ENST00000470588 KCNH5Q8NCM2 988 aa21.75■■□□□ 1.07
SMARCD3-206ENST00000470588 IFT57Q9NWB7 429 aa21.75■■□□□ 1.07
SMARCD3-206ENST00000470588 HSP90AB2PQ58FF8 381 aa21.74■■□□□ 1.07
SMARCD3-206ENST00000470588 CLUAP1Q96AJ1 413 aa21.74■■□□□ 1.07
SMARCD3-206ENST00000470588 ALDH1L2Q3SY69 923 aa21.74■■□□□ 1.07
SMARCD3-206ENST00000470588 SULT6B1Q6IMI4 303 aa21.74■■□□□ 1.07
SMARCD3-206ENST00000470588 BCL2L13Q9BXK5 485 aa21.74■■□□□ 1.07
SMARCD3-206ENST00000470588 LTN1O94822 1766 aa21.73■■□□□ 1.07
SMARCD3-206ENST00000470588 NPHP3Q7Z494 1330 aa21.73■■□□□ 1.07
SMARCD3-206ENST00000470588 ZNF853P0CG23 659 aa21.73■■□□□ 1.07
SMARCD3-206ENST00000470588 SMC4Q9NTJ3 1288 aa21.73■■□□□ 1.07
SMARCD3-206ENST00000470588 RTL1A6NKG5 1358 aa21.73■■□□□ 1.07
SMARCD3-206ENST00000470588 XPCQ01831 940 aaPredicted RBP21.72■■□□□ 1.07
SMARCD3-206ENST00000470588 SSH1Q8WYL5 1049 aa21.72■■□□□ 1.07
SMARCD3-206ENST00000470588 LMOD2Q6P5Q4 547 aa21.71■■□□□ 1.07
SMARCD3-206ENST00000470588 DZIP1LQ8IYY4 767 aaKnown RBP21.71■■□□□ 1.07
SMARCD3-206ENST00000470588 ALS2Q96Q42 1657 aa21.7■■□□□ 1.06
SMARCD3-206ENST00000470588 ARHGEF10O15013 1369 aa21.7■■□□□ 1.06
SMARCD3-206ENST00000470588 IPO8O15397 1037 aaKnown RBP21.7■■□□□ 1.06
SMARCD3-206ENST00000470588 RLBP1P12271 317 aa21.7■■□□□ 1.06
SMARCD3-206ENST00000470588 BRPF1P55201 1214 aaPredicted RBP21.7■■□□□ 1.06
SMARCD3-206ENST00000470588 LAS1LQ9Y4W2 734 aaKnown RBP21.7■■□□□ 1.06
SMARCD3-206ENST00000470588 NFAT5O94916 1531 aa21.7■■□□□ 1.06
SMARCD3-206ENST00000470588 CFAP44Q96MT7 982 aa21.69■■□□□ 1.06
SMARCD3-206ENST00000470588 SLIT3O75094 1523 aa21.69■■□□□ 1.06
SMARCD3-206ENST00000470588 RGPD1P0DJD0 1748 aa21.69■■□□□ 1.06
SMARCD3-206ENST00000470588 AEBP1Q8IUX7 1158 aa21.69■■□□□ 1.06
SMARCD3-206ENST00000470588 MVPQ14764 893 aaKnown RBP21.68■■□□□ 1.06
SMARCD3-206ENST00000470588 THUMPD2Q9BTF0 503 aaKnown RBP21.68■■□□□ 1.06
SMARCD3-206ENST00000470588 TNNQ9UQP3 1299 aa21.68■■□□□ 1.06
SMARCD3-206ENST00000470588 PDE4AP27815 886 aa21.67■■□□□ 1.06
SMARCD3-206ENST00000470588 PHRF1Q9P1Y6 1649 aaKnown RBP21.67■■□□□ 1.06
SMARCD3-206ENST00000470588 HOXC9P31274 260 aa21.66■■□□□ 1.06
SMARCD3-206ENST00000470588 ATF7IPQ6VMQ6 1270 aa21.66■■□□□ 1.06
SMARCD3-206ENST00000470588 FTSJ3Q8IY81 847 aaKnown RBP21.66■■□□□ 1.06
SMARCD3-206ENST00000470588 KIF16BQ96L93 1317 aa21.66■■□□□ 1.06
SMARCD3-206ENST00000470588 VAMP4O75379 141 aa21.66■■□□□ 1.06
SMARCD3-206ENST00000470588 IGHDP01880 384 aa21.66■■□□□ 1.06
SMARCD3-206ENST00000470588 NOB1Q9ULX3 412 aaKnown RBP21.66■■□□□ 1.06
SMARCD3-206ENST00000470588 DLG5Q8TDM6 1919 aa21.66■■□□□ 1.06
SMARCD3-206ENST00000470588 BACH2Q9BYV9 841 aa21.65■■□□□ 1.06
SMARCD3-206ENST00000470588 MBIPQ9NS73 344 aa21.65■■□□□ 1.06
SMARCD3-206ENST00000470588 SLAIN2Q9P270 581 aa21.65■■□□□ 1.06
SMARCD3-206ENST00000470588 USP19O94966 1318 aa21.65■■□□□ 1.06
SMARCD3-206ENST00000470588 TNS3Q68CZ2 1445 aa21.65■■□□□ 1.06
SMARCD3-206ENST00000470588 TRIM27P14373 513 aa21.64■■□□□ 1.05
SMARCD3-206ENST00000470588 PXDNQ92626 1479 aa21.63■■□□□ 1.05
SMARCD3-206ENST00000470588 BRINP3Q76B58 766 aa21.63■■□□□ 1.05
SMARCD3-206ENST00000470588 GCP02774 474 aa21.62■■□□□ 1.05
SMARCD3-206ENST00000470588 EYA1Q99502 592 aa21.62■■□□□ 1.05
SMARCD3-206ENST00000470588 IGSF1Q8N6C5 1336 aa21.62■■□□□ 1.05
SMARCD3-206ENST00000470588 FAM83GA6ND36 823 aa21.61■■□□□ 1.05
SMARCD3-206ENST00000470588 KDRP35968 1356 aa21.61■■□□□ 1.05
SMARCD3-206ENST00000470588 IP6K1Q92551 441 aa21.61■■□□□ 1.05
SMARCD3-206ENST00000470588 DDX19BQ9UMR2 479 aa21.61■■□□□ 1.05
SMARCD3-206ENST00000470588 ZBTB7CA1YPR0 619 aa21.61■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms