RNA–Protein interactions for RNA: ENST00000463727.1

PTPRE-205, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best)

Gene PTPRE, Length 3,944 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-205ENST00000463727 TBC1D9Q6ZT07 1266 aa12.82□□□□□ -0.36
PTPRE-205ENST00000463727 VAMP4O75379 141 aa12.81□□□□□ -0.36
PTPRE-205ENST00000463727 TNPO1Q92973 898 aaKnown RBP12.81□□□□□ -0.36
PTPRE-205ENST00000463727 RNF17Q9BXT8 1623 aaKnown RBP12.81□□□□□ -0.36
PTPRE-205ENST00000463727 PHACTR3Q96KR7 559 aa12.81□□□□□ -0.36
PTPRE-205ENST00000463727 SLC4A2P04920 1241 aa12.81□□□□□ -0.36
PTPRE-205ENST00000463727 IQGAP1P46940 1657 aa12.8□□□□□ -0.36
PTPRE-205ENST00000463727 EFCAB6Q5THR3 1501 aa12.8□□□□□ -0.36
PTPRE-205ENST00000463727 MROH1Q8NDA8 1641 aa12.8□□□□□ -0.36
PTPRE-205ENST00000463727 WASLO00401 505 aaPredicted RBP12.8□□□□□ -0.36
PTPRE-205ENST00000463727 RPAP2Q8IXW5 612 aaPredicted RBP12.8□□□□□ -0.36
PTPRE-205ENST00000463727 TSPYL6Q8N831 410 aa12.8□□□□□ -0.36
PTPRE-205ENST00000463727 PLEKHF1Q96S99 279 aa12.8□□□□□ -0.36
PTPRE-205ENST00000463727 MRPL50Q8N5N7 158 aaKnown RBP12.8□□□□□ -0.36
PTPRE-205ENST00000463727 VWDEQ8N2E2 1590 aa12.8□□□□□ -0.36
PTPRE-205ENST00000463727 XRCC6P12956 609 aaKnown RBP eCLIP12.8□□□□□ -0.36
PTPRE-205ENST00000463727 FKBP5Q13451 457 aaPredicted RBP12.8□□□□□ -0.36
PTPRE-205ENST00000463727 FAM83GA6ND36 823 aa12.79□□□□□ -0.36
PTPRE-205ENST00000463727 KIAA1211Q6ZU35 1233 aa12.79□□□□□ -0.36
PTPRE-205ENST00000463727 NECTIN2Q92692 538 aa12.79□□□□□ -0.36
PTPRE-205ENST00000463727 SNX21Q969T3 373 aa12.79□□□□□ -0.36
PTPRE-205ENST00000463727 LTV1Q96GA3 475 aaPredicted RBP12.79□□□□□ -0.36
PTPRE-205ENST00000463727 EID1Q9Y6B2 187 aa12.79□□□□□ -0.36
PTPRE-205ENST00000463727 YTHDC2Q9H6S0 1430 aaKnown RBP12.78□□□□□ -0.36
PTPRE-205ENST00000463727 ZBTB7BO15156 539 aaPredicted RBP12.78□□□□□ -0.36
PTPRE-205ENST00000463727 NASPP49321 788 aaPredicted RBP12.78□□□□□ -0.36
PTPRE-205ENST00000463727 ABCA6Q8N139 1617 aa12.78□□□□□ -0.36
PTPRE-205ENST00000463727 HECW2Q9P2P5 1572 aa12.78□□□□□ -0.36
PTPRE-205ENST00000463727 MLH3Q9UHC1 1453 aa12.78□□□□□ -0.36
PTPRE-205ENST00000463727 C8orf58Q8NAV2 365 aa12.78□□□□□ -0.36
PTPRE-205ENST00000463727 ANO2Q9NQ90 1003 aa12.78□□□□□ -0.36
PTPRE-205ENST00000463727 RIMBP3CA6NJZ7 1639 aa12.77□□□□□ -0.36
PTPRE-205ENST00000463727 RIMBP3BA6NNM3 1639 aa12.77□□□□□ -0.36
PTPRE-205ENST00000463727 RIMBP3Q9UFD9 1639 aa12.77□□□□□ -0.36
PTPRE-205ENST00000463727 ANTXR1Q9H6X2 564 aa12.77□□□□□ -0.36
PTPRE-205ENST00000463727 RBM25P49756 843 aaKnown RBP12.77□□□□□ -0.37
PTPRE-205ENST00000463727 DNTTIP2Q5QJE6 756 aaKnown RBP12.77□□□□□ -0.37
PTPRE-205ENST00000463727 MCM10Q7L590 875 aa12.77□□□□□ -0.37
PTPRE-205ENST00000463727 SYAP1Q96A49 352 aaPredicted RBP12.77□□□□□ -0.37
PTPRE-205ENST00000463727 ZFYVE9O95405 1425 aa12.77□□□□□ -0.37
PTPRE-205ENST00000463727 NEO1Q92859 1461 aa12.77□□□□□ -0.37
PTPRE-205ENST00000463727 CEP152O94986 1710 aa12.77□□□□□ -0.37
PTPRE-205ENST00000463727 KCNJ4P48050 445 aa12.76□□□□□ -0.37
PTPRE-205ENST00000463727 PANK2Q9BZ23 570 aa12.76□□□□□ -0.37
PTPRE-205ENST00000463727 CAVIN1Q6NZI2 390 aaKnown RBP12.76□□□□□ -0.37
PTPRE-205ENST00000463727 NEK4P51957 841 aa12.76□□□□□ -0.37
PTPRE-205ENST00000463727 PLCB2Q00722 1185 aa12.76□□□□□ -0.37
PTPRE-205ENST00000463727 FRMPD1Q5SYB0 1578 aa12.76□□□□□ -0.37
PTPRE-205ENST00000463727 ESPNB1AK53 854 aa12.75□□□□□ -0.37
PTPRE-205ENST00000463727 SSFA2P28290 1259 aa12.75□□□□□ -0.37
PTPRE-205ENST00000463727 ZRANB1Q9UGI0 708 aa12.75□□□□□ -0.37
PTPRE-205ENST00000463727 ERC2O15083 957 aa12.75□□□□□ -0.37
PTPRE-205ENST00000463727 RBM42Q9BTD8 480 aaKnown RBP12.75□□□□□ -0.37
PTPRE-205ENST00000463727 CWC22Q9HCG8 908 aaKnown RBP12.75□□□□□ -0.37
PTPRE-205ENST00000463727 SMARCA5O60264 1052 aaPredicted RBP12.75□□□□□ -0.37
PTPRE-205ENST00000463727 FOXD4L6Q3SYB3 417 aaPredicted RBP12.75□□□□□ -0.37
PTPRE-205ENST00000463727 FOXD4L3Q6VB84 417 aaPredicted RBP12.75□□□□□ -0.37
PTPRE-205ENST00000463727 PPRC1Q5VV67 1664 aaKnown RBP12.75□□□□□ -0.37
PTPRE-205ENST00000463727 GNAI3P08754 354 aa12.74□□□□□ -0.37
PTPRE-205ENST00000463727 CHMP4AQ9BY43 222 aa12.74□□□□□ -0.37
PTPRE-205ENST00000463727 DNAJC5Q9H3Z4 198 aa12.74□□□□□ -0.37
PTPRE-205ENST00000463727 GNAI2P04899 355 aa12.74□□□□□ -0.37
PTPRE-205ENST00000463727 CCT4P50991 539 aaKnown RBP12.74□□□□□ -0.37
PTPRE-205ENST00000463727 PRPF40AO75400 957 aaKnown RBP12.74□□□□□ -0.37
PTPRE-205ENST00000463727 LMOD2Q6P5Q4 547 aa12.74□□□□□ -0.37
PTPRE-205ENST00000463727 MIS18AQ9NYP9 233 aa12.74□□□□□ -0.37
PTPRE-205ENST00000463727 GAS2L2Q8NHY3 880 aa12.73□□□□□ -0.37
PTPRE-205ENST00000463727 HSP90AA2PQ14568 343 aaPredicted RBP12.73□□□□□ -0.37
PTPRE-205ENST00000463727 TTC22Q5TAA0 569 aa12.72□□□□□ -0.37
PTPRE-205ENST00000463727 CCDC173Q0VFZ6 552 aa12.72□□□□□ -0.37
PTPRE-205ENST00000463727 CCDC30Q5VVM6 783 aa12.72□□□□□ -0.37
PTPRE-205ENST00000463727 KIAA1210Q9ULL0 1709 aa12.72□□□□□ -0.37
PTPRE-205ENST00000463727 RAB3GAP1Q15042 981 aa12.71□□□□□ -0.37
PTPRE-205ENST00000463727 EIF2S2P20042 333 aaKnown RBP12.71□□□□□ -0.37
PTPRE-205ENST00000463727 IL13P35225 146 aa12.71□□□□□ -0.37
PTPRE-205ENST00000463727 NLRP6P59044 892 aa12.71□□□□□ -0.37
PTPRE-205ENST00000463727 ANKRD44Q8N8A2 993 aa12.71□□□□□ -0.37
PTPRE-205ENST00000463727 DCTPP1Q9H773 170 aa12.71□□□□□ -0.37
PTPRE-205ENST00000463727 PPIP5K1Q6PFW1 1433 aa12.71□□□□□ -0.37
PTPRE-205ENST00000463727 SETBP1Q9Y6X0 1596 aa12.71□□□□□ -0.37
PTPRE-205ENST00000463727 MCM2P49736 904 aa12.71□□□□□ -0.38
PTPRE-205ENST00000463727 C16orf71Q8IYS4 520 aaPredicted RBP12.71□□□□□ -0.38
PTPRE-205ENST00000463727 EXOC6BQ9Y2D4 811 aa12.71□□□□□ -0.38
PTPRE-205ENST00000463727 ADGRB3O60242 1522 aa12.7□□□□□ -0.38
PTPRE-205ENST00000463727 UBTFL1P0CB47 393 aaPredicted RBP12.7□□□□□ -0.38
PTPRE-205ENST00000463727 LRRCC1Q9C099 1032 aa12.7□□□□□ -0.38
PTPRE-205ENST00000463727 PPP6R1Q9UPN7 881 aa12.7□□□□□ -0.38
PTPRE-205ENST00000463727 YEATS2Q9ULM3 1422 aa12.7□□□□□ -0.38
PTPRE-205ENST00000463727 PTPRCP08575 1304 aa12.7□□□□□ -0.38
PTPRE-205ENST00000463727 LMTK2Q8IWU2 1503 aa12.7□□□□□ -0.38
PTPRE-205ENST00000463727 PHF14O94880 888 aa12.7□□□□□ -0.38
PTPRE-205ENST00000463727 BAG4O95429 457 aaKnown RBP12.7□□□□□ -0.38
PTPRE-205ENST00000463727 AEBP1Q8IUX7 1158 aa12.7□□□□□ -0.38
PTPRE-205ENST00000463727 F6X3S4 739 aa12.7□□□□□ -0.38
PTPRE-205ENST00000463727 PLEKHM2Q8IWE5 1019 aa12.7□□□□□ -0.38
PTPRE-205ENST00000463727 MEIS3Q99687 375 aa12.69□□□□□ -0.38
PTPRE-205ENST00000463727 DIP2CQ9Y2E4 1556 aa12.69□□□□□ -0.38
PTPRE-205ENST00000463727 SDSP20132 328 aa12.69□□□□□ -0.38
PTPRE-205ENST00000463727 KRT24Q2M2I5 525 aa12.69□□□□□ -0.38
PTPRE-205ENST00000463727 NUTM2GQ5VZR2 741 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms