RNA–Protein interactions for RNA: ENST00000462730.5

HDAC6-213, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 1,999 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-213ENST00000462730 PNNQ9H307 717 aaKnown RBP18.9■□□□□ 0.62
HDAC6-213ENST00000462730 CADPS2Q86UW7 1296 aa18.89■□□□□ 0.61
HDAC6-213ENST00000462730 MAP3K19Q56UN5 1328 aa18.88■□□□□ 0.61
HDAC6-213ENST00000462730 PRKCSHP14314 528 aaPredicted RBP18.88■□□□□ 0.61
HDAC6-213ENST00000462730 XPCQ01831 940 aaPredicted RBP18.88■□□□□ 0.61
HDAC6-213ENST00000462730 TMPOP42166 694 aaKnown RBP18.88■□□□□ 0.61
HDAC6-213ENST00000462730 EXOC6Q8TAG9 804 aa18.88■□□□□ 0.61
HDAC6-213ENST00000462730 FCHSD2O94868 740 aa18.87■□□□□ 0.61
HDAC6-213ENST00000462730 SBNO1A3KN83 1393 aa18.87■□□□□ 0.61
HDAC6-213ENST00000462730 RSPH6AQ9H0K4 717 aa18.86■□□□□ 0.61
HDAC6-213ENST00000462730 FLT4P35916 1363 aa18.86■□□□□ 0.61
HDAC6-213ENST00000462730 LTN1O94822 1766 aa18.85■□□□□ 0.61
HDAC6-213ENST00000462730 RGPD1P0DJD0 1748 aa18.85■□□□□ 0.61
HDAC6-213ENST00000462730 PRKAR2BP31323 418 aa18.85■□□□□ 0.61
HDAC6-213ENST00000462730 HSP90AB2PQ58FF8 381 aa18.85■□□□□ 0.61
HDAC6-213ENST00000462730 CCDC136Q96JN2 1154 aa18.85■□□□□ 0.61
HDAC6-213ENST00000462730 NFAT5O94916 1531 aa18.85■□□□□ 0.61
HDAC6-213ENST00000462730 HMOX1P09601 288 aa18.84■□□□□ 0.61
HDAC6-213ENST00000462730 EIF4A2Q14240 407 aaKnown RBP18.84■□□□□ 0.61
HDAC6-213ENST00000462730 ALS2Q96Q42 1657 aa18.84■□□□□ 0.61
HDAC6-213ENST00000462730 NEFMP07197 916 aa18.82■□□□□ 0.6
HDAC6-213ENST00000462730 KRT28Q7Z3Y7 464 aa18.82■□□□□ 0.6
HDAC6-213ENST00000462730 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.82■□□□□ 0.6
HDAC6-213ENST00000462730 TRIM35Q9UPQ4 493 aa18.82■□□□□ 0.6
HDAC6-213ENST00000462730 AMPHP49418 695 aa18.82■□□□□ 0.6
HDAC6-213ENST00000462730 RIPK4P57078 832 aa18.82■□□□□ 0.6
HDAC6-213ENST00000462730 CRBNQ96SW2 442 aa18.82■□□□□ 0.6
HDAC6-213ENST00000462730 MYH16Q9H6N6 1097 aa18.82■□□□□ 0.6
HDAC6-213ENST00000462730 SLIT3O75094 1523 aa18.82■□□□□ 0.6
HDAC6-213ENST00000462730 KIF24Q5T7B8 1368 aa18.81■□□□□ 0.6
HDAC6-213ENST00000462730 ERICH6Q7L0X2 663 aa18.81■□□□□ 0.6
HDAC6-213ENST00000462730 C20orf194Q5TEA3 1177 aa18.8■□□□□ 0.6
HDAC6-213ENST00000462730 DDX17Q92841 729 aaKnown RBP18.8■□□□□ 0.6
HDAC6-213ENST00000462730 FANCIQ9NVI1 1328 aa18.8■□□□□ 0.6
HDAC6-213ENST00000462730 LMOD2Q6P5Q4 547 aa18.79■□□□□ 0.6
HDAC6-213ENST00000462730 RTL1A6NKG5 1358 aa18.79■□□□□ 0.6
HDAC6-213ENST00000462730 PHRF1Q9P1Y6 1649 aaKnown RBP18.79■□□□□ 0.6
HDAC6-213ENST00000462730 BCAR3O75815 825 aa18.79■□□□□ 0.6
HDAC6-213ENST00000462730 HOXC9P31274 260 aa18.79■□□□□ 0.6
HDAC6-213ENST00000462730 NPHP3Q7Z494 1330 aa18.79■□□□□ 0.6
HDAC6-213ENST00000462730 NFE2L2Q16236 605 aa18.78■□□□□ 0.6
HDAC6-213ENST00000462730 PHACTR3Q96KR7 559 aa18.78■□□□□ 0.6
HDAC6-213ENST00000462730 PXDNQ92626 1479 aa18.78■□□□□ 0.6
HDAC6-213ENST00000462730 KCNH5Q8NCM2 988 aa18.77■□□□□ 0.6
HDAC6-213ENST00000462730 IL16Q14005 1332 aa18.77■□□□□ 0.6
HDAC6-213ENST00000462730 ARHGEF10O15013 1369 aa18.77■□□□□ 0.59
HDAC6-213ENST00000462730 MSH5O43196 834 aa18.77■□□□□ 0.59
HDAC6-213ENST00000462730 USP19O94966 1318 aa18.77■□□□□ 0.59
HDAC6-213ENST00000462730 AEBP1Q8IUX7 1158 aa18.77■□□□□ 0.59
HDAC6-213ENST00000462730 SULT6B1Q6IMI4 303 aa18.76■□□□□ 0.59
HDAC6-213ENST00000462730 BRINP3Q76B58 766 aa18.76■□□□□ 0.59
HDAC6-213ENST00000462730 MED1Q15648 1581 aaPredicted RBP18.75■□□□□ 0.59
HDAC6-213ENST00000462730 TNS3Q68CZ2 1445 aa18.75■□□□□ 0.59
HDAC6-213ENST00000462730 TSR2Q969E8 191 aaKnown RBP18.75■□□□□ 0.59
HDAC6-213ENST00000462730 DLG5Q8TDM6 1919 aa18.74■□□□□ 0.59
HDAC6-213ENST00000462730 PLEKHG5O94827 1062 aa18.74■□□□□ 0.59
HDAC6-213ENST00000462730 GCP02774 474 aa18.73■□□□□ 0.59
HDAC6-213ENST00000462730 RARSP54136 660 aaKnown RBP18.73■□□□□ 0.59
HDAC6-213ENST00000462730 IGSF1Q8N6C5 1336 aa18.73■□□□□ 0.59
HDAC6-213ENST00000462730 SLAIN2Q9P270 581 aa18.73■□□□□ 0.59
HDAC6-213ENST00000462730 KDRP35968 1356 aa18.72■□□□□ 0.59
HDAC6-213ENST00000462730 CRYBG1Q9Y4K1 1723 aa18.71■□□□□ 0.59
HDAC6-213ENST00000462730 ZBTB7CA1YPR0 619 aa18.71■□□□□ 0.59
HDAC6-213ENST00000462730 CANXP27824 592 aaKnown RBP18.71■□□□□ 0.59
HDAC6-213ENST00000462730 IP6K1Q92551 441 aa18.71■□□□□ 0.59
HDAC6-213ENST00000462730 EYA1Q99502 592 aa18.71■□□□□ 0.59
HDAC6-213ENST00000462730 EXOSC9Q06265 439 aaKnown RBP18.7■□□□□ 0.58
HDAC6-213ENST00000462730 CT47B1P0C2W7 299 aaPredicted RBP18.7■□□□□ 0.58
HDAC6-213ENST00000462730 ARHGEF25Q86VW2 580 aa18.69■□□□□ 0.58
HDAC6-213ENST00000462730 LTV1Q96GA3 475 aaPredicted RBP18.69■□□□□ 0.58
HDAC6-213ENST00000462730 SPATA31A3Q5VYP0 1347 aa18.69■□□□□ 0.58
HDAC6-213ENST00000462730 LMOD3Q0VAK6 560 aa18.68■□□□□ 0.58
HDAC6-213ENST00000462730 NHSL1Q5SYE7 1610 aa18.68■□□□□ 0.58
HDAC6-213ENST00000462730 LTBP4Q8N2S1 1624 aa18.68■□□□□ 0.58
HDAC6-213ENST00000462730 CALD1Q05682 793 aaKnown RBP18.68■□□□□ 0.58
HDAC6-213ENST00000462730 THUMPD2Q9BTF0 503 aaKnown RBP18.68■□□□□ 0.58
HDAC6-213ENST00000462730 FRAT1Q92837 279 aaPredicted RBP18.67■□□□□ 0.58
HDAC6-213ENST00000462730 BCL2L13Q9BXK5 485 aa18.67■□□□□ 0.58
HDAC6-213ENST00000462730 PDE3AQ14432 1141 aa18.66■□□□□ 0.58
HDAC6-213ENST00000462730 LAS1LQ9Y4W2 734 aaKnown RBP18.66■□□□□ 0.58
HDAC6-213ENST00000462730 RGPD2P0DJD1 1756 aa18.66■□□□□ 0.58
HDAC6-213ENST00000462730 SOS2Q07890 1332 aaPredicted RBP18.65■□□□□ 0.58
HDAC6-213ENST00000462730 RGPD5Q99666 1765 aa18.65■□□□□ 0.58
HDAC6-213ENST00000462730 ZC3H6P61129 1189 aaKnown RBP18.63■□□□□ 0.57
HDAC6-213ENST00000462730 CABLES1Q8TDN4 633 aa18.63■□□□□ 0.57
HDAC6-213ENST00000462730 PANK1Q8TE04 598 aa18.63■□□□□ 0.57
HDAC6-213ENST00000462730 IFT57Q9NWB7 429 aa18.63■□□□□ 0.57
HDAC6-213ENST00000462730 FAM83GA6ND36 823 aa18.62■□□□□ 0.57
HDAC6-213ENST00000462730 GNAI1P63096 354 aa18.62■□□□□ 0.57
HDAC6-213ENST00000462730 CAMTA1Q9Y6Y1 1673 aa18.62■□□□□ 0.57
HDAC6-213ENST00000462730 USHBP1Q8N6Y0 703 aa18.62■□□□□ 0.57
HDAC6-213ENST00000462730 SMC4Q9NTJ3 1288 aa18.62■□□□□ 0.57
HDAC6-213ENST00000462730 ROBO1Q9Y6N7 1651 aa18.61■□□□□ 0.57
HDAC6-213ENST00000462730 ABCA3Q99758 1704 aa18.61■□□□□ 0.57
HDAC6-213ENST00000462730 ZNF853P0CG23 659 aa18.61■□□□□ 0.57
HDAC6-213ENST00000462730 DCTN1Q14203 1278 aa18.61■□□□□ 0.57
HDAC6-213ENST00000462730 NBPF6Q5VWK0 638 aa18.61■□□□□ 0.57
HDAC6-213ENST00000462730 NBPF4Q96M43 638 aa18.61■□□□□ 0.57
HDAC6-213ENST00000462730 AXIN2Q9Y2T1 843 aa18.61■□□□□ 0.57
HDAC6-213ENST00000462730 COL18A1P39060 1754 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms