RNA–Protein interactions for RNA: ENST00000457745.1

RIF1-208, Transcript of replication timing regulatory factor 1, humanhuman

TSL 1 (best)

Gene RIF1, Length 1,006 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-208ENST00000457745 SPDYE4A6NLX3 237 aa11.74□□□□□ -0.53
RIF1-208ENST00000457745 COG3Q96JB2 828 aa11.74□□□□□ -0.53
RIF1-208ENST00000457745 PHRF1Q9P1Y6 1649 aaKnown RBP11.74□□□□□ -0.53
RIF1-208ENST00000457745 PAK3O75914 559 aaPredicted RBP11.73□□□□□ -0.53
RIF1-208ENST00000457745 PLEKHG5O94827 1062 aa11.73□□□□□ -0.53
RIF1-208ENST00000457745 INSRP06213 1382 aa11.73□□□□□ -0.53
RIF1-208ENST00000457745 MAP3K19Q56UN5 1328 aa11.73□□□□□ -0.53
RIF1-208ENST00000457745 KRT28Q7Z3Y7 464 aa11.73□□□□□ -0.53
RIF1-208ENST00000457745 ABCA3Q99758 1704 aa11.72□□□□□ -0.53
RIF1-208ENST00000457745 NLRP6P59044 892 aa11.72□□□□□ -0.53
RIF1-208ENST00000457745 CADPS2Q86UW7 1296 aa11.72□□□□□ -0.53
RIF1-208ENST00000457745 ROBO1Q9Y6N7 1651 aa11.71□□□□□ -0.53
RIF1-208ENST00000457745 PSME1Q06323 249 aa11.71□□□□□ -0.53
RIF1-208ENST00000457745 SALL2Q9Y467 1007 aaPredicted RBP11.71□□□□□ -0.53
RIF1-208ENST00000457745 RGPD2P0DJD1 1756 aa11.71□□□□□ -0.54
RIF1-208ENST00000457745 RGPD5Q99666 1765 aa11.7□□□□□ -0.54
RIF1-208ENST00000457745 USP19O94966 1318 aa11.7□□□□□ -0.54
RIF1-208ENST00000457745 ZBED9Q6R2W3 1325 aa11.7□□□□□ -0.54
RIF1-208ENST00000457745 PPM1GO15355 546 aaPredicted RBP11.7□□□□□ -0.54
RIF1-208ENST00000457745 IL13P35225 146 aa11.7□□□□□ -0.54
RIF1-208ENST00000457745 HSP90AB2PQ58FF8 381 aa11.7□□□□□ -0.54
RIF1-208ENST00000457745 ABTB2Q8N961 1025 aa11.7□□□□□ -0.54
RIF1-208ENST00000457745 SLAIN2Q9P270 581 aa11.7□□□□□ -0.54
RIF1-208ENST00000457745 SSUH2Q9Y2M2 353 aa11.7□□□□□ -0.54
RIF1-208ENST00000457745 TNS3Q68CZ2 1445 aa11.69□□□□□ -0.54
RIF1-208ENST00000457745 COL18A1P39060 1754 aa11.69□□□□□ -0.54
RIF1-208ENST00000457745 PITPNM1O00562 1244 aa11.69□□□□□ -0.54
RIF1-208ENST00000457745 EIF4A2Q14240 407 aaKnown RBP11.68□□□□□ -0.54
RIF1-208ENST00000457745 WDR43Q15061 677 aaKnown RBP eCLIP11.68□□□□□ -0.54
RIF1-208ENST00000457745 AEBP1Q8IUX7 1158 aa11.68□□□□□ -0.54
RIF1-208ENST00000457745 CABLES1Q8TDN4 633 aa11.68□□□□□ -0.54
RIF1-208ENST00000457745 SBNO1A3KN83 1393 aa11.67□□□□□ -0.54
RIF1-208ENST00000457745 ZNF521Q96K83 1311 aa11.67□□□□□ -0.54
RIF1-208ENST00000457745 APAF1O14727 1248 aa11.67□□□□□ -0.54
RIF1-208ENST00000457745 CDCA7LQ96GN5 454 aa11.67□□□□□ -0.54
RIF1-208ENST00000457745 PLEKHF1Q96S99 279 aa11.67□□□□□ -0.54
RIF1-208ENST00000457745 RRP7AQ9Y3A4 280 aaKnown RBP11.67□□□□□ -0.54
RIF1-208ENST00000457745 SOS2Q07890 1332 aaPredicted RBP11.66□□□□□ -0.54
RIF1-208ENST00000457745 SPATA31A3Q5VYP0 1347 aa11.66□□□□□ -0.54
RIF1-208ENST00000457745 U2SURPO15042 1029 aaKnown RBP11.66□□□□□ -0.54
RIF1-208ENST00000457745 DIAPH1O60610 1272 aaKnown RBP11.66□□□□□ -0.54
RIF1-208ENST00000457745 CENPBP07199 599 aaPredicted RBP11.66□□□□□ -0.54
RIF1-208ENST00000457745 U2AF1L5P0DN76 240 aaPredicted RBP11.66□□□□□ -0.54
RIF1-208ENST00000457745 U2AF1Q01081 240 aaKnown RBP eCLIP11.66□□□□□ -0.54
RIF1-208ENST00000457745 AHDC1Q5TGY3 1603 aaPredicted RBP11.65□□□□□ -0.54
RIF1-208ENST00000457745 HMOX1P09601 288 aa11.65□□□□□ -0.54
RIF1-208ENST00000457745 HOXC9P31274 260 aa11.65□□□□□ -0.54
RIF1-208ENST00000457745 FXR2P51116 673 aaKnown RBP eCLIP11.65□□□□□ -0.54
RIF1-208ENST00000457745 LMOD2Q6P5Q4 547 aa11.65□□□□□ -0.54
RIF1-208ENST00000457745 CFAP53Q96M91 514 aa11.65□□□□□ -0.54
RIF1-208ENST00000457745 RSPH6AQ9H0K4 717 aa11.65□□□□□ -0.54
RIF1-208ENST00000457745 DLG5Q8TDM6 1919 aa11.64□□□□□ -0.55
RIF1-208ENST00000457745 COL16A1Q07092 1604 aaPredicted RBP11.64□□□□□ -0.55
RIF1-208ENST00000457745 NPHP3Q7Z494 1330 aa11.64□□□□□ -0.55
RIF1-208ENST00000457745 PHACTR3Q96KR7 559 aa11.64□□□□□ -0.55
RIF1-208ENST00000457745 FLT4P35916 1363 aa11.64□□□□□ -0.55
RIF1-208ENST00000457745 CAMTA1Q9Y6Y1 1673 aa11.63□□□□□ -0.55
RIF1-208ENST00000457745 GCP02774 474 aa11.63□□□□□ -0.55
RIF1-208ENST00000457745 FKBP8Q14318 412 aa11.63□□□□□ -0.55
RIF1-208ENST00000457745 ARHGEF25Q86VW2 580 aa11.63□□□□□ -0.55
RIF1-208ENST00000457745 AXIN2Q9Y2T1 843 aa11.63□□□□□ -0.55
RIF1-208ENST00000457745 LMO7Q8WWI1 1683 aa11.62□□□□□ -0.55
RIF1-208ENST00000457745 ZBTB7CA1YPR0 619 aa11.62□□□□□ -0.55
RIF1-208ENST00000457745 PRKAR2BP31323 418 aa11.62□□□□□ -0.55
RIF1-208ENST00000457745 TCP11L2Q8N4U5 519 aa11.62□□□□□ -0.55
RIF1-208ENST00000457745 ZC3H6P61129 1189 aaKnown RBP11.61□□□□□ -0.55
RIF1-208ENST00000457745 EVX2Q03828 476 aa11.61□□□□□ -0.55
RIF1-208ENST00000457745 USHBP1Q8N6Y0 703 aa11.61□□□□□ -0.55
RIF1-208ENST00000457745 RUNDC1Q96C34 613 aa11.61□□□□□ -0.55
RIF1-208ENST00000457745 LTV1Q96GA3 475 aaPredicted RBP11.61□□□□□ -0.55
RIF1-208ENST00000457745 FAM208AQ9UK61 1670 aaKnown RBP11.61□□□□□ -0.55
RIF1-208ENST00000457745 PHLPP1O60346 1717 aa11.6□□□□□ -0.55
RIF1-208ENST00000457745 RTL1A6NKG5 1358 aa11.6□□□□□ -0.55
RIF1-208ENST00000457745 AMPHP49418 695 aa11.6□□□□□ -0.55
RIF1-208ENST00000457745 CHRNA2Q15822 529 aa11.6□□□□□ -0.55
RIF1-208ENST00000457745 LRRC59Q96AG4 307 aaKnown RBP11.6□□□□□ -0.55
RIF1-208ENST00000457745 EYA1Q99502 592 aa11.6□□□□□ -0.55
RIF1-208ENST00000457745 IGSF1Q8N6C5 1336 aa11.6□□□□□ -0.55
RIF1-208ENST00000457745 NEUROD2Q15784 382 aa11.59□□□□□ -0.55
RIF1-208ENST00000457745 IP6K1Q92551 441 aa11.59□□□□□ -0.55
RIF1-208ENST00000457745 TRIM35Q9UPQ4 493 aa11.59□□□□□ -0.55
RIF1-208ENST00000457745 COL22A1Q8NFW1 1626 aaPredicted RBP11.59□□□□□ -0.55
RIF1-208ENST00000457745 ARHGEF10O15013 1369 aa11.58□□□□□ -0.56
RIF1-208ENST00000457745 KIAA0232Q92628 1395 aa11.58□□□□□ -0.56
RIF1-208ENST00000457745 TMPOP42166 694 aaKnown RBP11.58□□□□□ -0.56
RIF1-208ENST00000457745 SULT6B1Q6IMI4 303 aa11.58□□□□□ -0.56
RIF1-208ENST00000457745 THUMPD2Q9BTF0 503 aaKnown RBP11.58□□□□□ -0.56
RIF1-208ENST00000457745 NCAPD2Q15021 1401 aa11.58□□□□□ -0.56
RIF1-208ENST00000457745 KDRP35968 1356 aa11.57□□□□□ -0.56
RIF1-208ENST00000457745 NBPF6Q5VWK0 638 aa11.57□□□□□ -0.56
RIF1-208ENST00000457745 NBPF4Q96M43 638 aa11.57□□□□□ -0.56
RIF1-208ENST00000457745 CLEC11AQ9Y240 323 aa11.57□□□□□ -0.56
RIF1-208ENST00000457745 NUDCQ9Y266 331 aa11.57□□□□□ -0.56
RIF1-208ENST00000457745 KIF24Q5T7B8 1368 aa11.56□□□□□ -0.56
RIF1-208ENST00000457745 PIP4K2BP78356 416 aa11.56□□□□□ -0.56
RIF1-208ENST00000457745 WWC1Q8IX03 1113 aa11.56□□□□□ -0.56
RIF1-208ENST00000457745 KCNH5Q8NCM2 988 aa11.56□□□□□ -0.56
RIF1-208ENST00000457745 SPDYE1Q8NFV5 336 aaPredicted RBP11.56□□□□□ -0.56
RIF1-208ENST00000457745 FAM83GA6ND36 823 aa11.55□□□□□ -0.56
RIF1-208ENST00000457745 FCHSD2O94868 740 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms