RNA–Protein interactions for RNA: ENST00000456174.6

HDAC9-218, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,307 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-218ENST00000456174 PAXIP1Q6ZW49 1069 aaPredicted RBP9.68□□□□□ -0.86
HDAC9-218ENST00000456174 C14orf37Q86TY3 774 aa9.68□□□□□ -0.86
HDAC9-218ENST00000456174 CCDC146Q8IYE0 955 aa9.68□□□□□ -0.86
HDAC9-218ENST00000456174 PIK3R4Q99570 1358 aa9.68□□□□□ -0.86
HDAC9-218ENST00000456174 EDC4Q6P2E9 1401 aaKnown RBP9.68□□□□□ -0.86
HDAC9-218ENST00000456174 DMTNQ08495 405 aa9.68□□□□□ -0.86
HDAC9-218ENST00000456174 RGPD8O14715 1765 aaPredicted RBP9.67□□□□□ -0.86
HDAC9-218ENST00000456174 MAP2P11137 1827 aaKnown RBP9.67□□□□□ -0.86
HDAC9-218ENST00000456174 MTERF4Q7Z6M4 381 aaKnown RBP9.67□□□□□ -0.86
HDAC9-218ENST00000456174 CDCA7LQ96GN5 454 aa9.67□□□□□ -0.86
HDAC9-218ENST00000456174 NUTM2FA1L443 756 aa9.66□□□□□ -0.86
HDAC9-218ENST00000456174 RRP1P56182 461 aaKnown RBP9.66□□□□□ -0.86
HDAC9-218ENST00000456174 RIPK4P57078 832 aa9.66□□□□□ -0.86
HDAC9-218ENST00000456174 ZNF692Q9BU19 519 aaPredicted RBP9.66□□□□□ -0.86
HDAC9-218ENST00000456174 ERBB4Q15303 1308 aa9.66□□□□□ -0.86
HDAC9-218ENST00000456174 APAF1O14727 1248 aa9.66□□□□□ -0.86
HDAC9-218ENST00000456174 KCNA6P17658 529 aa9.66□□□□□ -0.86
HDAC9-218ENST00000456174 HOXD11P31277 338 aaPredicted RBP9.65□□□□□ -0.86
HDAC9-218ENST00000456174 EXOC6Q8TAG9 804 aa9.65□□□□□ -0.86
HDAC9-218ENST00000456174 TMEM51Q9NW97 253 aa9.65□□□□□ -0.86
HDAC9-218ENST00000456174 VIRMAQ69YN4 1812 aaKnown RBP9.65□□□□□ -0.86
HDAC9-218ENST00000456174 MRE11P49959 708 aa9.65□□□□□ -0.87
HDAC9-218ENST00000456174 KIAA1211Q6ZU35 1233 aa9.65□□□□□ -0.87
HDAC9-218ENST00000456174 PANK2Q9BZ23 570 aa9.65□□□□□ -0.87
HDAC9-218ENST00000456174 NRKQ7Z2Y5 1582 aa9.64□□□□□ -0.87
HDAC9-218ENST00000456174 COL3A1P02461 1466 aaPredicted RBP9.64□□□□□ -0.87
HDAC9-218ENST00000456174 NKTRP30414 1462 aaKnown RBP9.64□□□□□ -0.87
HDAC9-218ENST00000456174 ACEP12821 1306 aa9.64□□□□□ -0.87
HDAC9-218ENST00000456174 ZNF521Q96K83 1311 aa9.64□□□□□ -0.87
HDAC9-218ENST00000456174 PLEKHG3A1L390 1219 aa9.64□□□□□ -0.87
HDAC9-218ENST00000456174 NME9Q86XW9 330 aa9.64□□□□□ -0.87
HDAC9-218ENST00000456174 ZHX1Q9UKY1 873 aaPredicted RBP9.64□□□□□ -0.87
HDAC9-218ENST00000456174 ISY1Q9ULR0 285 aaKnown RBP9.64□□□□□ -0.87
HDAC9-218ENST00000456174 NPHP4O75161 1426 aaPredicted RBP9.64□□□□□ -0.87
HDAC9-218ENST00000456174 NGEFQ8N5V2 710 aa9.64□□□□□ -0.87
HDAC9-218ENST00000456174 RUNDC1Q96C34 613 aa9.64□□□□□ -0.87
HDAC9-218ENST00000456174 FMN2Q9NZ56 1722 aa9.63□□□□□ -0.87
HDAC9-218ENST00000456174 NALCNQ8IZF0 1738 aa9.63□□□□□ -0.87
HDAC9-218ENST00000456174 GOLGA2Q08379 1002 aa9.63□□□□□ -0.87
HDAC9-218ENST00000456174 OFD1O75665 1012 aa9.62□□□□□ -0.87
HDAC9-218ENST00000456174 U2AF1L5P0DN76 240 aaPredicted RBP9.62□□□□□ -0.87
HDAC9-218ENST00000456174 U2AF1Q01081 240 aaKnown RBP eCLIP9.62□□□□□ -0.87
HDAC9-218ENST00000456174 PPP4R3BQ5MIZ7 849 aa9.62□□□□□ -0.87
HDAC9-218ENST00000456174 ZRANB1Q9UGI0 708 aa9.62□□□□□ -0.87
HDAC9-218ENST00000456174 RCAN3Q9UKA8 241 aa9.62□□□□□ -0.87
HDAC9-218ENST00000456174 FBLN1P23142 703 aa9.62□□□□□ -0.87
HDAC9-218ENST00000456174 HAP1P54257 671 aaPredicted RBP9.62□□□□□ -0.87
HDAC9-218ENST00000456174 FTSJ3Q8IY81 847 aaKnown RBP9.62□□□□□ -0.87
HDAC9-218ENST00000456174 COG3Q96JB2 828 aa9.62□□□□□ -0.87
HDAC9-218ENST00000456174 PNPLA6Q8IY17 1366 aa9.62□□□□□ -0.87
HDAC9-218ENST00000456174 TTC21BQ7Z4L5 1316 aa9.61□□□□□ -0.87
HDAC9-218ENST00000456174 KIF20AO95235 890 aa9.61□□□□□ -0.87
HDAC9-218ENST00000456174 FAM161AQ3B820 660 aa9.61□□□□□ -0.87
HDAC9-218ENST00000456174 POLKQ9UBT6 870 aa9.61□□□□□ -0.87
HDAC9-218ENST00000456174 USP6P35125 1406 aa9.61□□□□□ -0.87
HDAC9-218ENST00000456174 IQSEC2Q5JU85 1478 aa9.61□□□□□ -0.87
HDAC9-218ENST00000456174 U2SURPO15042 1029 aaKnown RBP9.61□□□□□ -0.87
HDAC9-218ENST00000456174 DIAPH1O60610 1272 aaKnown RBP9.61□□□□□ -0.87
HDAC9-218ENST00000456174 CHRM1P11229 460 aaPredicted RBP9.61□□□□□ -0.87
HDAC9-218ENST00000456174 TCP11L2Q8N4U5 519 aa9.61□□□□□ -0.87
HDAC9-218ENST00000456174 PMFBP1Q8TBY8 1022 aa9.61□□□□□ -0.87
HDAC9-218ENST00000456174 BRD2P25440 801 aaKnown RBP9.6□□□□□ -0.87
HDAC9-218ENST00000456174 SLFN5Q08AF3 891 aa9.6□□□□□ -0.87
HDAC9-218ENST00000456174 C8orf34Q49A92 452 aa9.6□□□□□ -0.87
HDAC9-218ENST00000456174 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.6□□□□□ -0.87
HDAC9-218ENST00000456174 ANKARQ7Z5J8 1434 aa9.6□□□□□ -0.87
HDAC9-218ENST00000456174 MYH16Q9H6N6 1097 aa9.6□□□□□ -0.87
HDAC9-218ENST00000456174 AATKQ6ZMQ8 1374 aa9.6□□□□□ -0.87
HDAC9-218ENST00000456174 ZSCAN20P17040 1043 aaPredicted RBP9.6□□□□□ -0.87
HDAC9-218ENST00000456174 NEUROD2Q15784 382 aa9.6□□□□□ -0.87
HDAC9-218ENST00000456174 DUSP27Q5VZP5 1158 aa9.6□□□□□ -0.87
HDAC9-218ENST00000456174 NGDNQ8NEJ9 315 aaKnown RBP9.6□□□□□ -0.87
HDAC9-218ENST00000456174 ZNF830Q96NB3 372 aaPredicted RBP9.6□□□□□ -0.87
HDAC9-218ENST00000456174 TEX2Q8IWB9 1127 aa9.59□□□□□ -0.87
HDAC9-218ENST00000456174 WWC1Q8IX03 1113 aa9.59□□□□□ -0.87
HDAC9-218ENST00000456174 GTPBP4Q9BZE4 634 aaKnown RBP9.59□□□□□ -0.87
HDAC9-218ENST00000456174 RRP7AQ9Y3A4 280 aaKnown RBP9.59□□□□□ -0.87
HDAC9-218ENST00000456174 EMILIN1Q9Y6C2 1016 aa9.59□□□□□ -0.87
HDAC9-218ENST00000456174 SSH2Q76I76 1423 aa9.59□□□□□ -0.87
HDAC9-218ENST00000456174 TMEM132AQ24JP5 1023 aa9.59□□□□□ -0.87
HDAC9-218ENST00000456174 TRMT2AQ8IZ69 625 aaKnown RBP9.59□□□□□ -0.87
HDAC9-218ENST00000456174 CDK12Q9NYV4 1490 aaPredicted RBP9.58□□□□□ -0.88
HDAC9-218ENST00000456174 E9PSI1 815 aa9.58□□□□□ -0.88
HDAC9-218ENST00000456174 RBM33Q96EV2 1170 aaKnown RBP9.58□□□□□ -0.88
HDAC9-218ENST00000456174 SPINK5Q9NQ38 1064 aaPredicted RBP9.58□□□□□ -0.88
HDAC9-218ENST00000456174 OVOS2A0A0J9YW53 1432 aa9.58□□□□□ -0.88
HDAC9-218ENST00000456174 OVOS2Q6IE36 1432 aa9.58□□□□□ -0.88
HDAC9-218ENST00000456174 TTC21AQ8NDW8 1320 aa9.58□□□□□ -0.88
HDAC9-218ENST00000456174 NWD1Q149M9 1564 aa9.58□□□□□ -0.88
HDAC9-218ENST00000456174 RRS1Q15050 365 aaKnown RBP9.57□□□□□ -0.88
HDAC9-218ENST00000456174 PLEKHF1Q96S99 279 aa9.57□□□□□ -0.88
HDAC9-218ENST00000456174 ANTXR1Q9H6X2 564 aa9.57□□□□□ -0.88
HDAC9-218ENST00000456174 DMRT2Q9Y5R5 561 aa9.57□□□□□ -0.88
HDAC9-218ENST00000456174 ADGRL3Q9HAR2 1447 aa9.57□□□□□ -0.88
HDAC9-218ENST00000456174 TAF3Q5VWG9 929 aa9.57□□□□□ -0.88
HDAC9-218ENST00000456174 GRPEL1Q9HAV7 217 aa9.57□□□□□ -0.88
HDAC9-218ENST00000456174 KDM2BQ8NHM5 1336 aa9.57□□□□□ -0.88
HDAC9-218ENST00000456174 LETM1O95202 739 aaPredicted RBP9.56□□□□□ -0.88
HDAC9-218ENST00000456174 CCDC27Q2M243 656 aa9.56□□□□□ -0.88
HDAC9-218ENST00000456174 PIK3C2AO00443 1686 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms