RNA–Protein interactions for RNA: ENST00000442201.6

CCDC39-201, Transcript of coiled-coil domain containing 39, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CCDC39, Length 3,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-201ENST00000442201 EIF4A2Q14240 407 aaKnown RBP10.59□□□□□ -0.71
CCDC39-201ENST00000442201 XIRP1Q702N8 1843 aaKnown RBP10.59□□□□□ -0.71
CCDC39-201ENST00000442201 ZNF521Q96K83 1311 aa10.59□□□□□ -0.71
CCDC39-201ENST00000442201 DDX17Q92841 729 aaKnown RBP10.59□□□□□ -0.71
CCDC39-201ENST00000442201 GOLGA2Q08379 1002 aa10.59□□□□□ -0.71
CCDC39-201ENST00000442201 NEUROD2Q15784 382 aa10.59□□□□□ -0.71
CCDC39-201ENST00000442201 PLEKHF1Q96S99 279 aa10.59□□□□□ -0.71
CCDC39-201ENST00000442201 USP54Q70EL1 1684 aa10.58□□□□□ -0.72
CCDC39-201ENST00000442201 NCBP3Q53F19 620 aaKnown RBP10.58□□□□□ -0.72
CCDC39-201ENST00000442201 CDCA7LQ96GN5 454 aa10.58□□□□□ -0.72
CCDC39-201ENST00000442201 RSPH6AQ9H0K4 717 aa10.58□□□□□ -0.72
CCDC39-201ENST00000442201 GCP02774 474 aa10.58□□□□□ -0.72
CCDC39-201ENST00000442201 HMOX1P09601 288 aa10.58□□□□□ -0.72
CCDC39-201ENST00000442201 PRKAR2BP31323 418 aa10.58□□□□□ -0.72
CCDC39-201ENST00000442201 RRP7AQ9Y3A4 280 aaKnown RBP10.58□□□□□ -0.72
CCDC39-201ENST00000442201 IQSEC2Q5JU85 1478 aa10.57□□□□□ -0.72
CCDC39-201ENST00000442201 USP19O94966 1318 aa10.57□□□□□ -0.72
CCDC39-201ENST00000442201 HOXC9P31274 260 aa10.57□□□□□ -0.72
CCDC39-201ENST00000442201 RTL1A6NKG5 1358 aa10.57□□□□□ -0.72
CCDC39-201ENST00000442201 NEFLP07196 543 aa10.57□□□□□ -0.72
CCDC39-201ENST00000442201 WWC1Q8IX03 1113 aa10.57□□□□□ -0.72
CCDC39-201ENST00000442201 CCDC27Q2M243 656 aa10.56□□□□□ -0.72
CCDC39-201ENST00000442201 TMPOP42166 694 aaKnown RBP10.56□□□□□ -0.72
CCDC39-201ENST00000442201 TRPM3Q9HCF6 1732 aaPredicted RBP10.56□□□□□ -0.72
CCDC39-201ENST00000442201 SPATA31A3Q5VYP0 1347 aa10.56□□□□□ -0.72
CCDC39-201ENST00000442201 TNS3Q68CZ2 1445 aa10.55□□□□□ -0.72
CCDC39-201ENST00000442201 PHF23Q9BUL5 403 aaPredicted RBP10.55□□□□□ -0.72
CCDC39-201ENST00000442201 PXDNQ92626 1479 aa10.55□□□□□ -0.72
CCDC39-201ENST00000442201 PEAK1Q9H792 1746 aa10.55□□□□□ -0.72
CCDC39-201ENST00000442201 SULT6B1Q6IMI4 303 aa10.55□□□□□ -0.72
CCDC39-201ENST00000442201 IP6K1Q92551 441 aa10.55□□□□□ -0.72
CCDC39-201ENST00000442201 NFAT5O94916 1531 aa10.55□□□□□ -0.72
CCDC39-201ENST00000442201 MARF1Q9Y4F3 1742 aaKnown RBP10.55□□□□□ -0.72
CCDC39-201ENST00000442201 ARHGEF10O15013 1369 aa10.55□□□□□ -0.72
CCDC39-201ENST00000442201 ZBTB7CA1YPR0 619 aa10.55□□□□□ -0.72
CCDC39-201ENST00000442201 ARHGEF25Q86VW2 580 aa10.55□□□□□ -0.72
CCDC39-201ENST00000442201 SLIT3O75094 1523 aa10.55□□□□□ -0.72
CCDC39-201ENST00000442201 E9PSI1 815 aa10.54□□□□□ -0.72
CCDC39-201ENST00000442201 SLFN5Q08AF3 891 aa10.54□□□□□ -0.72
CCDC39-201ENST00000442201 SOS2Q07890 1332 aaPredicted RBP10.54□□□□□ -0.72
CCDC39-201ENST00000442201 WDR63Q8IWG1 891 aa10.54□□□□□ -0.72
CCDC39-201ENST00000442201 LTBP4Q8N2S1 1624 aa10.54□□□□□ -0.72
CCDC39-201ENST00000442201 RIPK4P57078 832 aa10.53□□□□□ -0.72
CCDC39-201ENST00000442201 DUSP27Q5VZP5 1158 aa10.53□□□□□ -0.72
CCDC39-201ENST00000442201 AEBP1Q8IUX7 1158 aa10.53□□□□□ -0.72
CCDC39-201ENST00000442201 PHACTR3Q96KR7 559 aa10.53□□□□□ -0.72
CCDC39-201ENST00000442201 NFE2L2Q16236 605 aa10.53□□□□□ -0.72
CCDC39-201ENST00000442201 LTV1Q96GA3 475 aaPredicted RBP10.53□□□□□ -0.72
CCDC39-201ENST00000442201 EYA1Q99502 592 aa10.53□□□□□ -0.72
CCDC39-201ENST00000442201 IGSF1Q8N6C5 1336 aa10.53□□□□□ -0.72
CCDC39-201ENST00000442201 ALS2Q96Q42 1657 aa10.52□□□□□ -0.72
CCDC39-201ENST00000442201 TRMT2AQ8IZ69 625 aaKnown RBP10.52□□□□□ -0.73
CCDC39-201ENST00000442201 ZC3H6P61129 1189 aaKnown RBP10.52□□□□□ -0.73
CCDC39-201ENST00000442201 SPINK5Q9NQ38 1064 aaPredicted RBP10.52□□□□□ -0.73
CCDC39-201ENST00000442201 RCAN3Q9UKA8 241 aa10.52□□□□□ -0.73
CCDC39-201ENST00000442201 FKBP8Q14318 412 aa10.51□□□□□ -0.73
CCDC39-201ENST00000442201 TRIM35Q9UPQ4 493 aa10.51□□□□□ -0.73
CCDC39-201ENST00000442201 KDRP35968 1356 aa10.51□□□□□ -0.73
CCDC39-201ENST00000442201 CABLES1Q8TDN4 633 aa10.51□□□□□ -0.73
CCDC39-201ENST00000442201 MED1Q15648 1581 aaPredicted RBP10.5□□□□□ -0.73
CCDC39-201ENST00000442201 LMOD3Q0VAK6 560 aa10.5□□□□□ -0.73
CCDC39-201ENST00000442201 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.5□□□□□ -0.73
CCDC39-201ENST00000442201 MYH16Q9H6N6 1097 aa10.5□□□□□ -0.73
CCDC39-201ENST00000442201 RGPD1P0DJD0 1748 aa10.49□□□□□ -0.73
CCDC39-201ENST00000442201 IL16Q14005 1332 aa10.49□□□□□ -0.73
CCDC39-201ENST00000442201 CALD1Q05682 793 aaKnown RBP10.48□□□□□ -0.73
CCDC39-201ENST00000442201 PHRF1Q9P1Y6 1649 aaKnown RBP10.48□□□□□ -0.73
CCDC39-201ENST00000442201 RNF123Q5XPI4 1314 aa10.48□□□□□ -0.73
CCDC39-201ENST00000442201 HAP1P54257 671 aaPredicted RBP10.48□□□□□ -0.73
CCDC39-201ENST00000442201 ANKRD24Q8TF21 1146 aa10.48□□□□□ -0.73
CCDC39-201ENST00000442201 LTN1O94822 1766 aa10.48□□□□□ -0.73
CCDC39-201ENST00000442201 TOM1O60784 492 aa10.47□□□□□ -0.73
CCDC39-201ENST00000442201 NBPF6Q5VWK0 638 aa10.47□□□□□ -0.73
CCDC39-201ENST00000442201 NBPF4Q96M43 638 aa10.47□□□□□ -0.73
CCDC39-201ENST00000442201 AXIN2Q9Y2T1 843 aa10.47□□□□□ -0.73
CCDC39-201ENST00000442201 CPDO75976 1380 aa10.47□□□□□ -0.73
CCDC39-201ENST00000442201 LRRC59Q96AG4 307 aaKnown RBP10.47□□□□□ -0.73
CCDC39-201ENST00000442201 IL27Q8NEV9 243 aa10.46□□□□□ -0.73
CCDC39-201ENST00000442201 GAS2L2Q8NHY3 880 aa10.46□□□□□ -0.73
CCDC39-201ENST00000442201 NHSL1Q5SYE7 1610 aa10.46□□□□□ -0.73
CCDC39-201ENST00000442201 KIAA0232Q92628 1395 aa10.46□□□□□ -0.73
CCDC39-201ENST00000442201 IRX6P78412 446 aaPredicted RBP10.46□□□□□ -0.73
CCDC39-201ENST00000442201 USHBP1Q8N6Y0 703 aa10.46□□□□□ -0.73
CCDC39-201ENST00000442201 ERBB3P21860 1342 aa10.46□□□□□ -0.74
CCDC39-201ENST00000442201 RRP1P56182 461 aaKnown RBP10.45□□□□□ -0.74
CCDC39-201ENST00000442201 CHRNA2Q15822 529 aa10.45□□□□□ -0.74
CCDC39-201ENST00000442201 MTHFSDQ2M296 383 aaKnown RBP10.45□□□□□ -0.74
CCDC39-201ENST00000442201 PRDM11Q9NQV5 511 aa10.45□□□□□ -0.74
CCDC39-201ENST00000442201 THUMPD2Q9BTF0 503 aaKnown RBP10.45□□□□□ -0.74
CCDC39-201ENST00000442201 ROBO1Q9Y6N7 1651 aa10.44□□□□□ -0.74
CCDC39-201ENST00000442201 FAM83GA6ND36 823 aa10.44□□□□□ -0.74
CCDC39-201ENST00000442201 CSB-PGBD3P0DP91 1061 aa10.44□□□□□ -0.74
CCDC39-201ENST00000442201 GNAI1P63096 354 aa10.44□□□□□ -0.74
CCDC39-201ENST00000442201 RTF1Q92541 710 aaKnown RBP10.44□□□□□ -0.74
CCDC39-201ENST00000442201 TSR2Q969E8 191 aaKnown RBP10.44□□□□□ -0.74
CCDC39-201ENST00000442201 ABCC6O95255 1503 aa10.44□□□□□ -0.74
CCDC39-201ENST00000442201 IFT57Q9NWB7 429 aa10.43□□□□□ -0.74
CCDC39-201ENST00000442201 NLRP2Q9NX02 1062 aa10.43□□□□□ -0.74
CCDC39-201ENST00000442201 AHDC1Q5TGY3 1603 aaPredicted RBP10.43□□□□□ -0.74
CCDC39-201ENST00000442201 PIP4K2BP78356 416 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms